Rw1G040650

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0010371
Physical Location & Seq
Reverse (-)
67843918 .. 67844995
1078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G040650.1

Sequence Viewer

Length: 828 bp
ATGTCATCTCAAACTTTCCCATGTTTCGTTTTCCTCCTCTTTTCCGTTTCCTTCTATTCAGCTTACTCCTCCATATTCTCCATCGCAAACAACTGTCCATATACCATCTGGCCTGGCACATTATCCGGTTCTGGCACGCCTCCGCTTCCGACGACCGGGTTTCAGCTGTACTCGGGACAGAGTGCGAGAATTGATTCTGTTCCGGGATGGTCAGGGCGTATATGGGCTAGAACTGGGTGCACATTCAATGAGTTGGGAGTCGGAACATGTCAAACAGGTGACTGTGGAGGAAGGCTAGAATGTGACGGCAATGATTTCTACGATGTCAGCATTGTTGATGGATACAATCTGCCTCTTGTTGCCACCCCTCGCGGCGTCTATGGTGCGTGTAACGCCACCGGATGTGTCTCGGATATCAACAAAGGTTGTCCGAAAGAGCTTCAGTTGGTGGGAGGCGAAAATGAAGGGAATGTGATTGGATGCAAGAGTGCCTGCGACACATTCGGTTTGGACCAGTATTGCTGCAGTGGACAGTTTGCTAACCCAACAACATGCCGGCCCTCCTCCTACTCAACCATTTTCAAGCGAGCTTGTCCCAGAGCTTACAGCTATGCTTTTGATGATGGCACAAGCACTTTTACATGCAAGGCTTTTGAATATGCCATTGTTTTCTGCCCCGACAACAAGGTGAATCGAATAGCACATTGGCACCTCCAAGATTTGAAGTGCCTGGTGCTGGGAACGGTTGTGCGGGTGGCTTCCTCCTCGGACATGCTTTTACCAATTCCGTCTCTAATCTTTCTTCTCATCCTGAACATACTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

275

Amino Acids

29.71

Weight (kDa)

5.34

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 30 - 103 5.2e-24 Thaumatin family
Thaumatin PF00314 104 - 226 8.4e-45 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010371)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24620 AT5G24620 AT5G24620 AT5G24620
fragaria_vesca FvH4_7g33310
malus_domestica MD01G1231300.v1.1 MD07G1303300.v1.1
prunus_persica Prupe.2G322000_v2.0.a1
pyrus_communis pycom01g23930 pycom07g27620
rosa_chinensis RchiOBHm_Chr1g0383291
rosa_laevigata RLG00000026116
rosa_multiflora Rmu_sc0007173.1_g000020 Rmu_sc0014196.1_g000004
rosa_roxburghii Rroxscaffold_4G00277430
rosa_rugosa Rorug01G0440400
rosa_samantha Rh1AG465900 Rh1BG423300 Rh1CG436500 Rh1DG456000
rosa_wichuraiana Rw1G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 708
AccII CGCG 1 cut(s) 372
AciI CCGC 3 cut(s) 143, 372, 751
AcuI CTGAAG 1 cut(s) 425
AcyI GRCGYC 1 cut(s) 375
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 2 cut(s) 155, 736
AflIII ACRYGT 1 cut(s) 266
AgsI TTSAA 4 cut(s) 247, 583, 656, 724
AjnI CCWGG 2 cut(s) 112, 729
AjuI GAANNNNNNNTTGG 2 cut(s) 688, 720
AluBI AGCT 6 cut(s) 62, 166, 439, 590, 602, 609
AluI AGCT 6 cut(s) 62, 166, 439, 590, 602, 609
Alw21I GWGCWC 1 cut(s) 242
Alw26I GTCTC 2 cut(s) 412, 795
Alw44I GTGCAC 1 cut(s) 238
Ama87I CYCGRG 1 cut(s) 172
AoxI GGCC 2 cut(s) 110, 557
ApaLI GTGCAC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 522
Asp700I GAANNNNTTC 1 cut(s) 193
AspS9I GGNCC 2 cut(s) 511, 558
AsuC2I CCSGG 2 cut(s) 157, 204
AsuHPI GGTGA 2 cut(s) 290, 700
AvaI CYCGRG 1 cut(s) 172
AvaII GGWCC 1 cut(s) 511
BaeGI GKGCMC 1 cut(s) 242
BanI GGYRCC 1 cut(s) 708
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 509
BccI CCATC 5 cut(s) 89, 113, 201, 332, 617
BceAI ACGGC 1 cut(s) 322
BciT130I CCWGG 2 cut(s) 114, 731
BciVI GTATCC 1 cut(s) 335
BcnI CCSGG 2 cut(s) 157, 204
BcoDI GTCTC 2 cut(s) 412, 795
BfaI CTAG 2 cut(s) 228, 296
BfmI CTRYAG 1 cut(s) 523
BfuI GTATCC 1 cut(s) 335
BisI GCNGC 2 cut(s) 373, 523
BlsI GCNGC 2 cut(s) 374, 524
Bme1390I CCNGG 4 cut(s) 114, 157, 204, 731
Bme18I GGWCC 1 cut(s) 511
BmeT110I CYCGRG 1 cut(s) 172
BmgT120I GGNCC 2 cut(s) 511, 558
BmiI GGNNCC 1 cut(s) 710
BmrFI CCNGG 4 cut(s) 114, 157, 204, 731
BmrI ACTGGG 1 cut(s) 243
BmsI GCATC 1 cut(s) 470
BmuI ACTGGG 1 cut(s) 243
BpuMI CCSGG 2 cut(s) 157, 204
BsaHI GRCGYC 1 cut(s) 375
BsaJI CCNNGG 1 cut(s) 765
BsaWI WCCGGW 2 cut(s) 125, 398
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 736
Bse118I RCCGGY 1 cut(s) 555
Bse1I ACTGG 2 cut(s) 238, 514
Bse3DI GCAATG 1 cut(s) 316
BseBI CCWGG 2 cut(s) 114, 731
BseDI CCNNGG 1 cut(s) 765
BseGI GGATG 4 cut(s) 212, 407, 485, 807
BseLI CCNNNNNNNGG 2 cut(s) 155, 736
BseMI GCAATG 1 cut(s) 316
BseNI ACTGG 2 cut(s) 238, 514
BseRI GAGGAG 4 cut(s) 26, 58, 553, 754
BseSI GKGCMC 1 cut(s) 242
BseXI GCAGC 1 cut(s) 509
BseYI CCCAGC 1 cut(s) 736
Bsh1236I CGCG 1 cut(s) 372
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 2 cut(s) 112, 559
BshNI GGYRCC 1 cut(s) 708
BsiEI CGRYCG 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 172
BsiSI CCGG 5 cut(s) 126, 156, 203, 399, 556
BslFI GGGAC 2 cut(s) 189, 579
BslI CCNNNNNNNGG 2 cut(s) 155, 736
BsmAI GTCTC 2 cut(s) 412, 795
BsmBI CGTCTC 1 cut(s) 795
BsmFI GGGAC 2 cut(s) 189, 579
BsnI GGCC 2 cut(s) 112, 559
BsoBI CYCGRG 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 242
BspACI CCGC 3 cut(s) 143, 372, 751
BspANI GGCC 2 cut(s) 112, 559
BspFNI CGCG 1 cut(s) 372
BspLI GGNNCC 1 cut(s) 710
BspMAI CTGCAG 1 cut(s) 527
BspT107I GGYRCC 1 cut(s) 708
BsrDI GCAATG 1 cut(s) 316
BsrFI RCCGGY 1 cut(s) 555
BsrI ACTGG 2 cut(s) 238, 514
BssAI RCCGGY 1 cut(s) 555
BssECI CCNNGG 1 cut(s) 765
BssNI GRCGYC 1 cut(s) 375
Bst2UI CCWGG 2 cut(s) 114, 731
Bst4CI ACNGT 4 cut(s) 95, 284, 534, 745
BstACI GRCGYC 1 cut(s) 375
BstC8I GCNNGC 4 cut(s) 137, 493, 557, 588
BstF5I GGATG 4 cut(s) 212, 407, 485, 807
BstFNI CGCG 1 cut(s) 372
BstMAI GTCTC 2 cut(s) 412, 795
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 1 cut(s) 392
BstNI CCWGG 2 cut(s) 114, 731
BstNSI RCATGY 4 cut(s) 270, 555, 645, 775
BstSCI CCNGG 4 cut(s) 112, 155, 202, 729
BstSFI CTRYAG 1 cut(s) 523
BstSLI GKGCMC 1 cut(s) 242
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 509
BsuI GTATCC 1 cut(s) 335
BsuRI GGCC 2 cut(s) 112, 559
BtgZI GCGATG 1 cut(s) 67
BtsCI GGATG 4 cut(s) 212, 407, 485, 807
BtsI GCAGTG 1 cut(s) 532
BtsIMutI CAGTG 1 cut(s) 532
Cac8I GCNNGC 4 cut(s) 137, 493, 557, 588
Cfr10I RCCGGY 1 cut(s) 555
Cfr13I GGNCC 2 cut(s) 511, 558
CseI GACGC 1 cut(s) 364
Csp6I GTAC 1 cut(s) 169
CviAII CATG 5 cut(s) 21, 267, 552, 642, 772
CviQI GTAC 1 cut(s) 169
Eco32I GATATC 1 cut(s) 415
Eco47I GGWCC 1 cut(s) 511
Eco57I CTGAAG 1 cut(s) 425
Eco88I CYCGRG 1 cut(s) 172
EcoRII CCWGG 2 cut(s) 112, 729
EcoRV GATATC 1 cut(s) 415
Esp3I CGTCTC 1 cut(s) 795
FaeI CATG 5 cut(s) 24, 270, 555, 645, 775
FaqI GGGAC 2 cut(s) 189, 579
FatI CATG 5 cut(s) 20, 266, 551, 641, 771
FauI CCCGC 1 cut(s) 744
Fnu4HI GCNGC 2 cut(s) 373, 523
FokI GGATG 4 cut(s) 219, 414, 492, 794
Fsp4HI GCNGC 2 cut(s) 373, 523
FspBI CTAG 2 cut(s) 228, 296
GluI GCNGC 2 cut(s) 373, 523
GsaI CCCAGC 1 cut(s) 740
HaeIII GGCC 2 cut(s) 112, 559
HapII CCGG 5 cut(s) 126, 156, 203, 399, 556
HgaI GACGC 1 cut(s) 364
Hin1I GRCGYC 1 cut(s) 375
Hin1II CATG 5 cut(s) 24, 270, 555, 645, 775
HinfI GANTC 3 cut(s) 194, 258, 691
HpaII CCGG 5 cut(s) 126, 156, 203, 399, 556
HphI GGTGA 2 cut(s) 290, 700
Hpy166II GTNNAC 2 cut(s) 240, 530
Hpy188I TCNGA 5 cut(s) 150, 263, 412, 432, 769
Hpy188III TCNNGA 2 cut(s) 174, 811
Hpy8I GTNNAC 2 cut(s) 240, 530
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 3 cut(s) 61, 285, 458
HpyCH4III ACNGT 4 cut(s) 95, 284, 534, 745
HpyCH4V TGCA 4 cut(s) 240, 483, 525, 645
HpyF10VI GCNNNNNNNGC 1 cut(s) 392
Hsp92I GRCGYC 1 cut(s) 375
Hsp92II CATG 5 cut(s) 24, 270, 555, 645, 775
KroI GCCGGC 1 cut(s) 555
KroNI GCCGGC 1 cut(s) 557
Lsp1109I GCAGC 1 cut(s) 509
LweI GCATC 1 cut(s) 470
MaeI CTAG 2 cut(s) 228, 296
MaeIII GTNAC 3 cut(s) 278, 302, 389
MboII GAAGA 1 cut(s) 794
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 2 cut(s) 189, 783
MlyI GAGTC 1 cut(s) 267
MmeI TCCRAC 2 cut(s) 173, 241
MroNI GCCGGC 1 cut(s) 555
MroXI GAANNNNTTC 1 cut(s) 193
MspA1I CMGCKG 1 cut(s) 166
MspI CCGG 5 cut(s) 126, 156, 203, 399, 556
MspR9I CCNGG 4 cut(s) 114, 157, 204, 731
MvaI CCWGG 2 cut(s) 114, 731
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 1 cut(s) 392
NaeI GCCGGC 1 cut(s) 557
NciI CCSGG 2 cut(s) 157, 204
NgoMIV GCCGGC 1 cut(s) 555
NlaIII CATG 5 cut(s) 24, 270, 555, 645, 775
NlaIV GGNNCC 1 cut(s) 710
NmuCI GTSAC 2 cut(s) 278, 302
NspI RCATGY 4 cut(s) 270, 555, 645, 775
PciI ACATGT 1 cut(s) 266
PdiI GCCGGC 1 cut(s) 557
PdmI GAANNNNTTC 1 cut(s) 193
PfeI GAWTC 2 cut(s) 194, 691
PfoI TCCNGGA 1 cut(s) 202
PkrI GCNGC 2 cut(s) 374, 524
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
PscI ACATGT 1 cut(s) 266
Psp6I CCWGG 2 cut(s) 112, 729
PspFI CCCAGC 1 cut(s) 736
PspGI CCWGG 2 cut(s) 112, 729
PspN4I GGNNCC 1 cut(s) 710
PspPI GGNCC 2 cut(s) 511, 558
PstI CTGCAG 1 cut(s) 527
PvuII CAGCTG 1 cut(s) 166
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SatI GCNGC 2 cut(s) 373, 523
Sau96I GGNCC 2 cut(s) 511, 558
SchI GAGTC 1 cut(s) 267
ScrFI CCNGG 4 cut(s) 114, 157, 204, 731
SduI GDGCHC 1 cut(s) 242
SfaNI GCATC 1 cut(s) 470
SfcI CTRYAG 1 cut(s) 523
SinI GGWCC 1 cut(s) 511
Sse9I AATT 2 cut(s) 189, 783
SsiI CCGC 3 cut(s) 143, 372, 751
SspMI CTAG 2 cut(s) 228, 296
StyD4I CCNGG 4 cut(s) 112, 155, 202, 729
TaaI ACNGT 4 cut(s) 95, 284, 534, 745
TaqI TCGA 1 cut(s) 694
TasI AATT 2 cut(s) 189, 783
TatI WGTACW 1 cut(s) 168
TauI GCSGC 1 cut(s) 375
TfiI GAWTC 2 cut(s) 194, 691
TscAI CASTG 1 cut(s) 532
TseFI GTSAC 2 cut(s) 278, 302
TseI GCWGC 1 cut(s) 522
Tsp45I GTSAC 2 cut(s) 278, 302
TspDTI ATGAA 1 cut(s) 477
TspGWI ACGGA 2 cut(s) 34, 777
TspRI CASTG 1 cut(s) 532
VneI GTGCAC 1 cut(s) 238
VpaK11BI GGWCC 1 cut(s) 511
XceI RCATGY 4 cut(s) 270, 555, 645, 775
XcmI CCANNNNNNNNNTGG 1 cut(s) 105
XmnI GAANNNNTTC 1 cut(s) 193
XspI CTAG 2 cut(s) 228, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.