Prupe.2G322000_v2.0.a1

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0010371
Physical Location & Seq
Forward (+)
29902854 .. 29904879
2026 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G322000.1

Sequence Viewer

Length: 897 bp
ATGACACCTCAAACTTTCCCTTGTTTCCTTTTCATCCTCTTTCCCCTTTTCTTCTCTTTATCCTGTTCGTGCACATTCACTATAACAAACAACTGCCCGGATACCATCTGGCCAGGTACTTTAGCTGGTTCGGGCAGGCCCCAACTCCCAACAACTGGATTCCGGTTGGACTCTGGCCAAAGTGCCAGAATTCCTCCTACTCCAGAATGGTCAGGACGTATCTGGGCAAGAACAGGTTGCACATTTGATGAGTTGGGAGCGGGCACATGTCAAACAGGCGACTGTGGAGGAAGACTGGAATGTAATGGCAACGGTGCCACTCCACCTGCCTCACTCTTTGAGATAACCCTTGGCAATGGCAATGATAAAGATTTTTACGATGTCAGCATTGTAGACGGCTACAATCTACCCCTTATCGCTTCTCCACGCGGCGTGTATGGTGCCTGCAATGCTACTGGCTGTGCTTCAGATATCAACATAGGTTGCCCAAAAGAGCTTCAGGTGGTGGGAGGTGTAAACGAAGGGAGTGTGGTTGGGTGCAAGAGTGCCTGCGATGCATTTGGTTTGGACCAATACTGCTGCAGTGGACAGTTTGCTAACCCAACAACATGCCAGCCTTCCTTTTATTCAACCATTTTCAAGCGGGCTTGTCCAAGAGCATACAGTTATGCTTTTGATGATGGCACAAGCACTTTTACATGCAAAGCCTTTGAATATGCCATTGTTTTCTGCCCTAACGGCAACGGGACGACACAACCGGATGATTCGTTAGCTCCTCCAAGATATCAAGTGCCTGGCAGTGAAAAGGTTGTGCGGCAGATGGTTTCTTCTTCAAACATGCTCTTACCGATTCCGTCACTAATCCTTCTTCTCATCTTCTTCTACATACTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

299

Amino Acids

31.86

Weight (kDa)

4.67

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010371)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24620 AT5G24620 AT5G24620 AT5G24620
fragaria_vesca FvH4_7g33310
malus_domestica MD01G1231300.v1.1 MD07G1303300.v1.1
prunus_persica Prupe.2G322000_v2.0.a1
pyrus_communis pycom01g23930 pycom07g27620
rosa_chinensis RchiOBHm_Chr1g0383291
rosa_laevigata RLG00000026116
rosa_multiflora Rmu_sc0007173.1_g000020 Rmu_sc0014196.1_g000004
rosa_roxburghii Rroxscaffold_4G00277430
rosa_rugosa Rorug01G0440400
rosa_samantha Rh1AG465900 Rh1BG423300 Rh1CG436500 Rh1DG456000
rosa_wichuraiana Rw1G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 334
Acc36I ACCTGC 1 cut(s) 334
AccB1I GGYRCC 2 cut(s) 314, 440
AccB7I CCANNNNNTGG 1 cut(s) 155
AccBSI CCGCTC 1 cut(s) 260
AccI GTMKAC 1 cut(s) 393
AccII CGCG 1 cut(s) 429
AciI CCGC 4 cut(s) 260, 429, 643, 814
AcoI YGGCCR 2 cut(s) 110, 175
AcsI RAATTY 1 cut(s) 189
AcuI CTGAAG 2 cut(s) 450, 482
AfaI GTAC 1 cut(s) 118
AfiI CCNNNNNNNGG 1 cut(s) 155
AflIII ACRYGT 1 cut(s) 266
AgsI TTSAA 4 cut(s) 630, 640, 713, 834
AjnI CCWGG 2 cut(s) 112, 793
AluBI AGCT 3 cut(s) 125, 496, 773
AluI AGCT 3 cut(s) 125, 496, 773
Alw21I GWGCWC 1 cut(s) 74
Alw44I GTGCAC 1 cut(s) 70
AoxI GGCC 3 cut(s) 110, 137, 175
ApaLI GTGCAC 1 cut(s) 70
ApeKI GCWGC 1 cut(s) 579
ApoI RAATTY 1 cut(s) 189
AspS9I GGNCC 2 cut(s) 138, 568
AsuC2I CCSGG 1 cut(s) 98
AvaII GGWCC 1 cut(s) 568
BaeGI GKGCMC 2 cut(s) 74, 266
BalI TGGCCA 2 cut(s) 112, 177
BanI GGYRCC 2 cut(s) 314, 440
BbsI GAAGAC 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 566
BccI CCATC 3 cut(s) 113, 674, 814
BceAI ACGGC 2 cut(s) 412, 754
BciT130I CCWGG 2 cut(s) 114, 795
BciVI GTATCC 1 cut(s) 94
BcnI CCSGG 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 580
BfuAI ACCTGC 1 cut(s) 334
BfuI GTATCC 1 cut(s) 94
BglI GCCNNNNNGGC 1 cut(s) 738
BisI GCNGC 3 cut(s) 430, 580, 815
BlsI GCNGC 3 cut(s) 431, 581, 816
Bme1390I CCNGG 3 cut(s) 98, 114, 795
Bme18I GGWCC 1 cut(s) 568
BmgT120I GGNCC 2 cut(s) 138, 568
BmiI GGNNCC 3 cut(s) 140, 316, 442
BmrFI CCNGG 3 cut(s) 98, 114, 795
BmsI GCATC 1 cut(s) 544
BpiI GAAGAC 1 cut(s) 298
BpmI CTGGAG 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 349
BsaWI WCCGGW 2 cut(s) 162, 757
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse1I ACTGG 3 cut(s) 160, 300, 460
Bse3DI GCAATG 3 cut(s) 361, 367, 454
BseBI CCWGG 2 cut(s) 114, 795
BseDI CCNNGG 1 cut(s) 349
BseGI GGATG 2 cut(s) 33, 766
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMI GCAATG 3 cut(s) 361, 367, 454
BseNI ACTGG 3 cut(s) 160, 300, 460
BseRI GAGGAG 1 cut(s) 765
BseSI GKGCMC 2 cut(s) 74, 266
BseXI GCAGC 1 cut(s) 566
Bsh1236I CGCG 1 cut(s) 429
BshFI GGCC 3 cut(s) 112, 139, 177
BshNI GGYRCC 2 cut(s) 314, 440
BsiHKAI GWGCWC 1 cut(s) 74
BsiSI CCGG 3 cut(s) 98, 163, 758
BslFI GGGAC 1 cut(s) 760
BslI CCNNNNNNNGG 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 760
BsnI GGCC 3 cut(s) 112, 139, 177
Bsp1286I GDGCHC 2 cut(s) 74, 266
BspACI CCGC 4 cut(s) 260, 429, 643, 814
BspANI GGCC 3 cut(s) 112, 139, 177
BspFNI CGCG 1 cut(s) 429
BspLI GGNNCC 3 cut(s) 140, 316, 442
BspMAI CTGCAG 1 cut(s) 584
BspMI ACCTGC 1 cut(s) 334
BspT107I GGYRCC 2 cut(s) 314, 440
BsrBI CCGCTC 1 cut(s) 260
BsrDI GCAATG 3 cut(s) 361, 367, 454
BsrI ACTGG 3 cut(s) 160, 300, 460
BssECI CCNNGG 1 cut(s) 349
BssT1I CCWWGG 1 cut(s) 349
Bst2UI CCWGG 2 cut(s) 114, 795
Bst4CI ACNGT 4 cut(s) 284, 314, 591, 665
BstC8I GCNNGC 6 cut(s) 137, 262, 445, 550, 614, 645
BstF5I GGATG 2 cut(s) 33, 766
BstFNI CGCG 1 cut(s) 429
BstMWI GCNNNNNNNGC 3 cut(s) 449, 554, 738
BstNI CCWGG 2 cut(s) 114, 795
BstNSI RCATGY 4 cut(s) 270, 612, 702, 841
BstSCI CCNGG 3 cut(s) 96, 112, 793
BstSFI CTRYAG 1 cut(s) 580
BstSLI GKGCMC 2 cut(s) 74, 266
BstUI CGCG 1 cut(s) 429
BstV1I GCAGC 1 cut(s) 566
BstV2I GAAGAC 1 cut(s) 298
BsuI GTATCC 1 cut(s) 94
BsuRI GGCC 3 cut(s) 112, 139, 177
BtgZI GCGATG 1 cut(s) 567
BtsCI GGATG 2 cut(s) 33, 766
BtsI GCAGTG 2 cut(s) 589, 805
BtsIMutI CAGTG 2 cut(s) 589, 805
BveI ACCTGC 1 cut(s) 334
Cac8I GCNNGC 6 cut(s) 137, 262, 445, 550, 614, 645
Cfr13I GGNCC 2 cut(s) 138, 568
Csp6I GTAC 1 cut(s) 117
CviAII CATG 4 cut(s) 267, 609, 699, 838
CviQI GTAC 1 cut(s) 117
EaeI YGGCCR 2 cut(s) 110, 175
Eco130I CCWWGG 1 cut(s) 349
Eco32I GATATC 2 cut(s) 472, 785
Eco47I GGWCC 1 cut(s) 568
Eco57I CTGAAG 2 cut(s) 450, 482
EcoO109I RGGNCCY 1 cut(s) 138
EcoRI GAATTC 1 cut(s) 189
EcoRII CCWGG 2 cut(s) 112, 793
EcoRV GATATC 2 cut(s) 472, 785
EcoT14I CCWWGG 1 cut(s) 349
EcoT22I ATGCAT 1 cut(s) 559
ErhI CCWWGG 1 cut(s) 349
FaeI CATG 4 cut(s) 270, 612, 702, 841
FaqI GGGAC 1 cut(s) 760
FatI CATG 4 cut(s) 266, 608, 698, 837
FauI CCCGC 2 cut(s) 253, 636
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 3 cut(s) 430, 580, 815
FokI GGATG 2 cut(s) 20, 773
Fsp4HI GCNGC 3 cut(s) 430, 580, 815
GluI GCNGC 3 cut(s) 430, 580, 815
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 3 cut(s) 112, 139, 177
HapII CCGG 3 cut(s) 98, 163, 758
Hin1II CATG 4 cut(s) 270, 612, 702, 841
HinfI GANTC 4 cut(s) 159, 170, 764, 850
HpaII CCGG 3 cut(s) 98, 163, 758
Hpy166II GTNNAC 4 cut(s) 72, 394, 517, 587
Hpy188I TCNGA 1 cut(s) 469
Hpy188III TCNNGA 3 cut(s) 203, 213, 894
Hpy8I GTNNAC 4 cut(s) 72, 394, 517, 587
HpyAV CCTTC 3 cut(s) 515, 627, 875
HpyCH4III ACNGT 4 cut(s) 284, 314, 591, 665
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 7 cut(s) 72, 240, 447, 540, 557, 582, 702
HpyF10VI GCNNNNNNNGC 3 cut(s) 449, 554, 738
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 4 cut(s) 270, 612, 702, 841
LmnI GCTCC 2 cut(s) 257, 778
Lsp1109I GCAGC 1 cut(s) 566
LweI GCATC 1 cut(s) 544
MaeII ACGT 1 cut(s) 217
MaeIII GTNAC 1 cut(s) 855
MbiI CCGCTC 1 cut(s) 260
MboII GAAGA 7 cut(s) 43, 303, 819, 822, 860, 868, 871
MhlI GDGCHC 2 cut(s) 74, 266
MlsI TGGCCA 2 cut(s) 112, 177
MluCI AATT 1 cut(s) 189
MluNI TGGCCA 2 cut(s) 112, 177
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 7 cut(s) 18, 47, 204, 281, 340, 503, 786
Mox20I TGGCCA 2 cut(s) 112, 177
Mph1103I ATGCAT 1 cut(s) 559
MscI TGGCCA 2 cut(s) 112, 177
Msp20I TGGCCA 2 cut(s) 112, 177
MspI CCGG 3 cut(s) 98, 163, 758
MspR9I CCNGG 3 cut(s) 98, 114, 795
MvaI CCWGG 2 cut(s) 114, 795
MvnI CGCG 1 cut(s) 429
MwoI GCNNNNNNNGC 3 cut(s) 449, 554, 738
NciI CCSGG 1 cut(s) 98
NlaIII CATG 4 cut(s) 270, 612, 702, 841
NlaIV GGNNCC 3 cut(s) 140, 316, 442
NmuCI GTSAC 1 cut(s) 855
NsiI ATGCAT 1 cut(s) 559
NspI RCATGY 4 cut(s) 270, 612, 702, 841
PaqCI CACCTGC 1 cut(s) 334
PciI ACATGT 1 cut(s) 266
PfeI GAWTC 3 cut(s) 159, 764, 850
PflMI CCANNNNNTGG 1 cut(s) 155
PkrI GCNGC 3 cut(s) 431, 581, 816
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PscI ACATGT 1 cut(s) 266
Psp6I CCWGG 2 cut(s) 112, 793
PspGI CCWGG 2 cut(s) 112, 793
PspN4I GGNNCC 3 cut(s) 140, 316, 442
PspPI GGNCC 2 cut(s) 138, 568
PstI CTGCAG 1 cut(s) 584
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
SatI GCNGC 3 cut(s) 430, 580, 815
Sau96I GGNCC 2 cut(s) 138, 568
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 3 cut(s) 98, 114, 795
SduI GDGCHC 2 cut(s) 74, 266
SfaNI GCATC 1 cut(s) 544
SfcI CTRYAG 1 cut(s) 580
SinI GGWCC 1 cut(s) 568
Sse9I AATT 1 cut(s) 189
SsiI CCGC 4 cut(s) 260, 429, 643, 814
StyD4I CCNGG 3 cut(s) 96, 112, 793
StyI CCWWGG 1 cut(s) 349
TaaI ACNGT 4 cut(s) 284, 314, 591, 665
TaiI ACGT 1 cut(s) 220
TasI AATT 1 cut(s) 189
TauI GCSGC 2 cut(s) 432, 817
TfiI GAWTC 3 cut(s) 159, 764, 850
TscAI CASTG 2 cut(s) 589, 805
TseFI GTSAC 1 cut(s) 855
TseI GCWGC 1 cut(s) 579
Tsp45I GTSAC 1 cut(s) 855
TspDTI ATGAA 1 cut(s) 22
TspGWI ACGGA 1 cut(s) 843
TspRI CASTG 2 cut(s) 589, 805
Van91I CCANNNNNTGG 1 cut(s) 155
VneI GTGCAC 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 568
XapI RAATTY 1 cut(s) 189
XceI RCATGY 4 cut(s) 270, 612, 702, 841
XmiI GTMKAC 1 cut(s) 393
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.