RLG00000026116

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0010371
Physical Location & Seq
Reverse (-)
634256 .. 637951
3696 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026116

Sequence Viewer

Length: 1227 bp
ATGGAGGTCAATGGGAAATCTGTGGTAGCAGCACCTGCTAATGTTATTTTTCTGTCGACAATTTTGGGACGGGATGGGTCAATGTCTGTTCATAAGTGTGACTGGAAGTGTCAGAATGAGCATGTCTGTGGGAATATGTATCGCTGCAAGGTGACTGGACTCACTCACATCTGTGACAAGAATTGCAACCAGAGGATTCTGTATGATAACCATAGCTCTCTTTGCCGGGCAAGCGGGAAGGTTTTCCCCCTTACACTAGTAGAGGAACAGGCAGTGAGAGGGGTCCGGAGGAAGCTTGAGTCAGAGGCCCCTGCTGCTGCAGACAATTGTTCCTTTAAGCGCAGACGGGATGCACAGCTCCATCCTTCTCCTTTCGAGAGATCCTTCACTACTGCCACTTACTCCTCCATATTCTCCATCACAAACAACTGTCCATATACCATCTGGCCTGGCACATTATCCGGTTCTGGCACGCCTCCGCTTCCGACGACCGGGTTTCAGCTGTACTCGGGACAGAGTGCAAGAATTGATTCTGTTCCGGGATGGTCAGGGCGTATATGGGCTAGAACTGGGTGCACATTCAATGAGTTGGGGGTCGGAACATGTCAAACAGGTGACTGTGGAGGAAGGCTAGAATGTGATGGCAATGGTGCCACCCCACCTGCTTCACTCTTTGAAATAACCCTTGGCAAGGGCAATGACAAAGATTTCTACGATGTCAGCATTGTTGATGGATACAATCTGCCTCTTGTTGTGACCCCTCGCGGTGTCTATGGTGCGTGTAACGCCACCGGATGTGTCTCGGATATCAACAAAGGTTGTCCGAAAGAGCTTCAGGTGGTGGGAGGAGAAAATGAAGGGAATGTGATTGCATGCAAGAGTGCCTGCGACACATTCGGTTTGGATCAGTATTGCTGCAGTGGACGGTTTGCTAACCCAACAACGTGCCGGCCCTCCTCTTATTCAACCATTTTCAAGCGAGCTTGTCCCAGAGCTTACAGCTATGCTTTTGATGATGGCACAAGCACTTTTACATGCAAGGCTTTTGAATATGCCATTGTTTTCTGCCCCAGCAGCAAAGGGACGAGTGAATCGAATAGCACATTGGCACCTCCAAGATTTGAAGTGCCTGGTACTGGGAAGGTTGTGCGGGTGGCTTCCTCCTCAGACATGCTTTTACCGATTCCGTCGCTAATCTTTCTTCTCATCCTGAACATACTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

409

Amino Acids

43.97

Weight (kDa)

8.11

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 142 - 357 1.1e-82 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010371)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24620 AT5G24620 AT5G24620 AT5G24620
fragaria_vesca FvH4_7g33310
malus_domestica MD01G1231300.v1.1 MD07G1303300.v1.1
prunus_persica Prupe.2G322000_v2.0.a1
pyrus_communis pycom01g23930 pycom07g27620
rosa_chinensis RchiOBHm_Chr1g0383291
rosa_laevigata RLG00000026116
rosa_multiflora Rmu_sc0007173.1_g000020 Rmu_sc0014196.1_g000004
rosa_roxburghii Rroxscaffold_4G00277430
rosa_rugosa Rorug01G0440400
rosa_samantha Rh1AG465900 Rh1BG423300 Rh1CG436500 Rh1DG456000
rosa_wichuraiana Rw1G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 43, 670
Acc36I ACCTGC 2 cut(s) 43, 670
AccB1I GGYRCC 2 cut(s) 650, 1108
AccI GTMKAC 1 cut(s) 56
AccII CGCG 1 cut(s) 765
AccIII TCCGGA 1 cut(s) 285
AciI CCGC 4 cut(s) 234, 479, 765, 1150
AclWI GGATC 2 cut(s) 375, 912
AcuI CTGAAG 1 cut(s) 818
AfaI GTAC 2 cut(s) 506, 1135
AfiI CCNNNNNNNGG 3 cut(s) 491, 691, 1136
AflIII ACRYGT 1 cut(s) 602
AgsI TTSAA 6 cut(s) 583, 677, 966, 976, 1049, 1124
AhlI ACTAGT 1 cut(s) 256
AjnI CCWGG 2 cut(s) 448, 1129
AjuI GAANNNNNNNTTGG 4 cut(s) 669, 701, 1088, 1120
AleI CACNNNNGTG 1 cut(s) 171
AluBI AGCT 8 cut(s) 216, 295, 358, 502, 832, 983, 995, 1002
AluI AGCT 8 cut(s) 216, 295, 358, 502, 832, 983, 995, 1002
Alw21I GWGCWC 1 cut(s) 578
Alw26I GTCTC 1 cut(s) 805
Alw44I GTGCAC 1 cut(s) 574
AlwI GGATC 2 cut(s) 375, 912
AlwNI CAGNNNCTG 1 cut(s) 35
Ama87I CYCGRG 1 cut(s) 508
Aor13HI TCCGGA 1 cut(s) 285
AoxI GGCC 3 cut(s) 306, 446, 950
ApaLI GTGCAC 1 cut(s) 574
ApeKI GCWGC 6 cut(s) 29, 144, 314, 317, 915, 1074
Asp700I GAANNNNTTC 2 cut(s) 242, 529
AspLEI GCGC 1 cut(s) 342
AspS9I GGNCC 3 cut(s) 283, 307, 951
AsuC2I CCSGG 3 cut(s) 227, 493, 540
AsuHPI GGTGA 2 cut(s) 163, 626
AvaI CYCGRG 1 cut(s) 508
AvaII GGWCC 1 cut(s) 283
BaeGI GKGCMC 1 cut(s) 578
BanI GGYRCC 2 cut(s) 650, 1108
Bbv12I GWGCWC 1 cut(s) 578
BbvI GCAGC 6 cut(s) 41, 131, 301, 304, 902, 1086
BccI CCATC 8 cut(s) 68, 369, 425, 449, 537, 635, 725, 1010
BciT130I CCWGG 2 cut(s) 450, 1131
BciVI GTATCC 1 cut(s) 728
BcnI CCSGG 3 cut(s) 227, 493, 540
BcoDI GTCTC 1 cut(s) 805
BcuI ACTAGT 1 cut(s) 256
BfaI CTAG 3 cut(s) 257, 564, 632
BfmI CTRYAG 2 cut(s) 318, 916
BfuAI ACCTGC 2 cut(s) 43, 670
BfuI GTATCC 1 cut(s) 728
BisI GCNGC 6 cut(s) 30, 145, 315, 318, 916, 1075
BlsI GCNGC 6 cut(s) 31, 146, 316, 319, 917, 1076
Bme1390I CCNGG 5 cut(s) 227, 450, 493, 540, 1131
Bme18I GGWCC 1 cut(s) 283
BmeT110I CYCGRG 1 cut(s) 508
BmgT120I GGNCC 3 cut(s) 283, 307, 951
BmiI GGNNCC 4 cut(s) 284, 309, 652, 1110
BmrFI CCNGG 5 cut(s) 227, 450, 493, 540, 1131
BmrI ACTGGG 2 cut(s) 579, 1146
BmsI GCATC 1 cut(s) 340
BmuI ACTGGG 2 cut(s) 579, 1146
BpuEI CTTGAG 1 cut(s) 317
BpuMI CCSGG 3 cut(s) 227, 493, 540
BsaJI CCNNGG 1 cut(s) 685
BsaWI WCCGGW 3 cut(s) 285, 461, 791
Bsc4I CCNNNNNNNGG 3 cut(s) 491, 691, 1136
Bse118I RCCGGY 1 cut(s) 948
Bse1I ACTGG 4 cut(s) 107, 160, 574, 1141
Bse3DI GCAATG 2 cut(s) 652, 703
BseAI TCCGGA 1 cut(s) 285
BseBI CCWGG 2 cut(s) 450, 1131
BseDI CCNNGG 1 cut(s) 685
BseGI GGATG 6 cut(s) 79, 355, 361, 548, 800, 1206
BseLI CCNNNNNNNGG 3 cut(s) 491, 691, 1136
BseMI GCAATG 2 cut(s) 652, 703
BseMII CTCAG 1 cut(s) 1179
BseNI ACTGG 4 cut(s) 107, 160, 574, 1141
BseRI GAGGAG 4 cut(s) 394, 861, 946, 1153
BseSI GKGCMC 1 cut(s) 578
BseXI GCAGC 6 cut(s) 41, 131, 301, 304, 902, 1086
BseYI CCCAGC 1 cut(s) 1070
Bsh1236I CGCG 1 cut(s) 765
Bsh1285I CGRYCG 1 cut(s) 492
BshFI GGCC 3 cut(s) 308, 448, 952
BshNI GGYRCC 2 cut(s) 650, 1108
BsiEI CGRYCG 1 cut(s) 492
BsiHKAI GWGCWC 1 cut(s) 578
BsiHKCI CYCGRG 1 cut(s) 508
BsiSI CCGG 7 cut(s) 226, 286, 462, 492, 539, 792, 949
BslFI GGGAC 4 cut(s) 81, 525, 972, 1096
BslI CCNNNNNNNGG 3 cut(s) 491, 691, 1136
BsmAI GTCTC 1 cut(s) 805
BsmFI GGGAC 4 cut(s) 81, 525, 972, 1096
BsnI GGCC 3 cut(s) 308, 448, 952
BsoBI CYCGRG 1 cut(s) 508
Bsp1286I GDGCHC 1 cut(s) 578
Bsp13I TCCGGA 1 cut(s) 285
Bsp143I GATC 2 cut(s) 380, 904
BspACI CCGC 4 cut(s) 234, 479, 765, 1150
BspANI GGCC 3 cut(s) 308, 448, 952
BspCNI CTCAG 1 cut(s) 1178
BspEI TCCGGA 1 cut(s) 285
BspFNI CGCG 1 cut(s) 765
BspLI GGNNCC 4 cut(s) 284, 309, 652, 1110
BspMAI CTGCAG 2 cut(s) 322, 920
BspMI ACCTGC 2 cut(s) 43, 670
BspPI GGATC 2 cut(s) 375, 912
BspT107I GGYRCC 2 cut(s) 650, 1108
BsrDI GCAATG 2 cut(s) 652, 703
BsrFI RCCGGY 1 cut(s) 948
BsrI ACTGG 4 cut(s) 107, 160, 574, 1141
BssAI RCCGGY 1 cut(s) 948
BssECI CCNNGG 1 cut(s) 685
BssMI GATC 2 cut(s) 380, 904
BssT1I CCWWGG 1 cut(s) 685
Bst2UI CCWGG 2 cut(s) 450, 1131
Bst4CI ACNGT 3 cut(s) 431, 620, 927
BstAPI GCANNNNNTGC 1 cut(s) 35
BstC8I GCNNGC 6 cut(s) 232, 473, 874, 886, 950, 981
BstDEI CTNAG 1 cut(s) 1165
BstENI CCTNNNNNAGG 1 cut(s) 689
BstF5I GGATG 6 cut(s) 79, 355, 361, 548, 800, 1206
BstFNI CGCG 1 cut(s) 765
BstHHI GCGC 1 cut(s) 342
BstKTI GATC 2 cut(s) 383, 907
BstMAI GTCTC 1 cut(s) 805
BstMBI GATC 2 cut(s) 380, 904
BstMCI CGRYCG 1 cut(s) 492
BstMWI GCNNNNNNNGC 6 cut(s) 35, 222, 231, 314, 785, 1074
BstNI CCWGG 2 cut(s) 450, 1131
BstNSI RCATGY 5 cut(s) 125, 606, 876, 1038, 1174
BstSCI CCNGG 5 cut(s) 225, 448, 491, 538, 1129
BstSFI CTRYAG 2 cut(s) 318, 916
BstSLI GKGCMC 1 cut(s) 578
BstUI CGCG 1 cut(s) 765
BstV1I GCAGC 6 cut(s) 41, 131, 301, 304, 902, 1086
BstX2I RGATCY 1 cut(s) 380
BstYI RGATCY 1 cut(s) 380
BsuI GTATCC 1 cut(s) 728
BsuRI GGCC 3 cut(s) 308, 448, 952
BtsCI GGATG 6 cut(s) 79, 355, 361, 548, 800, 1206
BtsI GCAGTG 2 cut(s) 279, 925
BtsIMutI CAGTG 2 cut(s) 279, 925
BveI ACCTGC 2 cut(s) 43, 670
Cac8I GCNNGC 6 cut(s) 232, 473, 874, 886, 950, 981
CaiI CAGNNNCTG 1 cut(s) 35
CfoI GCGC 1 cut(s) 342
Cfr10I RCCGGY 1 cut(s) 948
Cfr13I GGNCC 3 cut(s) 283, 307, 951
Csp6I GTAC 2 cut(s) 505, 1134
CviAII CATG 5 cut(s) 122, 603, 873, 1035, 1171
CviQI GTAC 2 cut(s) 505, 1134
DdeI CTNAG 1 cut(s) 1165
DpnI GATC 2 cut(s) 382, 906
DpnII GATC 2 cut(s) 380, 904
Eco130I CCWWGG 1 cut(s) 685
Eco32I GATATC 1 cut(s) 808
Eco47I GGWCC 1 cut(s) 283
Eco57I CTGAAG 1 cut(s) 818
Eco88I CYCGRG 1 cut(s) 508
EcoNI CCTNNNNNAGG 1 cut(s) 689
EcoO109I RGGNCCY 1 cut(s) 307
EcoRII CCWGG 2 cut(s) 448, 1129
EcoRV GATATC 1 cut(s) 808
EcoT14I CCWWGG 1 cut(s) 685
ErhI CCWWGG 1 cut(s) 685
FaeI CATG 5 cut(s) 125, 606, 876, 1038, 1174
FaqI GGGAC 4 cut(s) 81, 525, 972, 1096
FatI CATG 5 cut(s) 121, 602, 872, 1034, 1170
FauI CCCGC 2 cut(s) 227, 1143
FblI GTMKAC 1 cut(s) 56
Fnu4HI GCNGC 6 cut(s) 30, 145, 315, 318, 916, 1075
FokI GGATG 6 cut(s) 86, 348, 362, 555, 807, 1193
Fsp4HI GCNGC 6 cut(s) 30, 145, 315, 318, 916, 1075
FspBI CTAG 3 cut(s) 257, 564, 632
GlaI GCGC 1 cut(s) 341
GluI GCNGC 6 cut(s) 30, 145, 315, 318, 916, 1075
GsaI CCCAGC 1 cut(s) 1074
HaeIII GGCC 3 cut(s) 308, 448, 952
HapII CCGG 7 cut(s) 226, 286, 462, 492, 539, 792, 949
HhaI GCGC 1 cut(s) 342
Hin1II CATG 5 cut(s) 125, 606, 876, 1038, 1174
Hin6I GCGC 1 cut(s) 340
HinP1I GCGC 1 cut(s) 340
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 6 cut(s) 159, 196, 299, 530, 1091, 1183
HpaII CCGG 7 cut(s) 226, 286, 462, 492, 539, 792, 949
HphI GGTGA 2 cut(s) 163, 626
Hpy166II GTNNAC 3 cut(s) 57, 576, 923
Hpy188I TCNGA 7 cut(s) 114, 304, 486, 599, 805, 825, 1168
Hpy188III TCNNGA 4 cut(s) 286, 376, 510, 1210
Hpy8I GTNNAC 3 cut(s) 57, 576, 923
Hpy99I CGWCG 2 cut(s) 490, 1192
HpyAV CCTTC 6 cut(s) 232, 375, 394, 621, 851, 1135
HpyCH4III ACNGT 3 cut(s) 431, 620, 927
HpyCH4IV ACGT 1 cut(s) 944
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 222, 231, 314, 785, 1074
HpyF3I CTNAG 1 cut(s) 1165
HpySE526I ACGT 1 cut(s) 944
Hsp92II CATG 5 cut(s) 125, 606, 876, 1038, 1174
HspAI GCGC 1 cut(s) 340
Kpn2I TCCGGA 1 cut(s) 285
KroI GCCGGC 1 cut(s) 948
KroNI GCCGGC 1 cut(s) 950
Kzo9I GATC 2 cut(s) 380, 904
LmnI GCTCC 1 cut(s) 363
Lsp1109I GCAGC 6 cut(s) 41, 131, 301, 304, 902, 1086
LweI GCATC 1 cut(s) 340
MaeI CTAG 3 cut(s) 257, 564, 632
MaeII ACGT 1 cut(s) 944
MaeIII GTNAC 6 cut(s) 98, 151, 173, 614, 754, 782
MalI GATC 2 cut(s) 382, 906
MboI GATC 2 cut(s) 380, 904
MboII GAAGA 1 cut(s) 1193
MfeI CAATTG 1 cut(s) 325
MflI RGATCY 1 cut(s) 380
MhlI GDGCHC 1 cut(s) 578
MluCI AATT 4 cut(s) 60, 181, 325, 525
MlyI GAGTC 2 cut(s) 153, 308
MmeI TCCRAC 2 cut(s) 509, 577
MroI TCCGGA 1 cut(s) 285
MroNI GCCGGC 1 cut(s) 948
MroXI GAANNNNTTC 2 cut(s) 242, 529
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 3 cut(s) 96, 126, 171
MspA1I CMGCKG 1 cut(s) 502
MspI CCGG 7 cut(s) 226, 286, 462, 492, 539, 792, 949
MspR9I CCNGG 5 cut(s) 227, 450, 493, 540, 1131
MunI CAATTG 1 cut(s) 325
MvaI CCWGG 2 cut(s) 450, 1131
MvnI CGCG 1 cut(s) 765
MwoI GCNNNNNNNGC 6 cut(s) 35, 222, 231, 314, 785, 1074
NaeI GCCGGC 1 cut(s) 950
NciI CCSGG 3 cut(s) 227, 493, 540
NdeII GATC 2 cut(s) 380, 904
NgoMIV GCCGGC 1 cut(s) 948
NlaIII CATG 5 cut(s) 125, 606, 876, 1038, 1174
NlaIV GGNNCC 4 cut(s) 284, 309, 652, 1110
NmuCI GTSAC 5 cut(s) 98, 151, 173, 614, 754
NspI RCATGY 5 cut(s) 125, 606, 876, 1038, 1174
OliI CACNNNNGTG 1 cut(s) 171
PaeI GCATGC 1 cut(s) 876
PaqCI CACCTGC 2 cut(s) 43, 670
PciI ACATGT 1 cut(s) 602
PcsI WCGNNNNNNNCGW 1 cut(s) 1091
PdiI GCCGGC 1 cut(s) 950
PdmI GAANNNNTTC 2 cut(s) 242, 529
PfeI GAWTC 4 cut(s) 196, 530, 1091, 1183
PfoI TCCNGGA 1 cut(s) 538
PkrI GCNGC 6 cut(s) 31, 146, 316, 319, 917, 1076
PleI GAGTC 2 cut(s) 153, 307
PpsI GAGTC 2 cut(s) 153, 307
PscI ACATGT 1 cut(s) 602
Psp6I CCWGG 2 cut(s) 448, 1129
PspFI CCCAGC 1 cut(s) 1070
PspGI CCWGG 2 cut(s) 448, 1129
PspN4I GGNNCC 4 cut(s) 284, 309, 652, 1110
PspPI GGNCC 3 cut(s) 283, 307, 951
PstI CTGCAG 2 cut(s) 322, 920
PstNI CAGNNNCTG 1 cut(s) 35
PsuI RGATCY 1 cut(s) 380
PvuII CAGCTG 1 cut(s) 502
RsaI GTAC 2 cut(s) 506, 1135
RsaNI GTAC 2 cut(s) 505, 1134
RseI CAYNNNNRTG 3 cut(s) 96, 126, 171
SalI GTCGAC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 6 cut(s) 30, 145, 315, 318, 916, 1075
Sau3AI GATC 2 cut(s) 380, 904
Sau96I GGNCC 3 cut(s) 283, 307, 951
SchI GAGTC 2 cut(s) 153, 308
ScrFI CCNGG 5 cut(s) 227, 450, 493, 540, 1131
SduI GDGCHC 1 cut(s) 578
SfaNI GCATC 1 cut(s) 340
SfcI CTRYAG 2 cut(s) 318, 916
SinI GGWCC 1 cut(s) 283
SmiMI CAYNNNNRTG 3 cut(s) 96, 126, 171
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
SpeI ACTAGT 1 cut(s) 256
SphI GCATGC 1 cut(s) 876
Sse9I AATT 4 cut(s) 60, 181, 325, 525
SsiI CCGC 4 cut(s) 234, 479, 765, 1150
SspMI CTAG 3 cut(s) 257, 564, 632
StyD4I CCNGG 5 cut(s) 225, 448, 491, 538, 1129
StyI CCWWGG 1 cut(s) 685
TaaI ACNGT 3 cut(s) 431, 620, 927
TaiI ACGT 1 cut(s) 947
TaqI TCGA 3 cut(s) 56, 375, 1094
TasI AATT 4 cut(s) 60, 181, 325, 525
TatI WGTACW 1 cut(s) 504
TfiI GAWTC 4 cut(s) 196, 530, 1091, 1183
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 2 cut(s) 279, 925
TseFI GTSAC 5 cut(s) 98, 151, 173, 614, 754
TseI GCWGC 6 cut(s) 29, 144, 314, 317, 915, 1074
Tsp45I GTSAC 5 cut(s) 98, 151, 173, 614, 754
TspDTI ATGAA 2 cut(s) 80, 870
TspGWI ACGGA 1 cut(s) 1176
TspRI CASTG 2 cut(s) 279, 925
VneI GTGCAC 1 cut(s) 574
VpaK11BI GGWCC 1 cut(s) 283
XagI CCTNNNNNAGG 1 cut(s) 689
XceI RCATGY 5 cut(s) 125, 606, 876, 1038, 1174
XcmI CCANNNNNNNNNTGG 1 cut(s) 441
XmiI GTMKAC 1 cut(s) 56
XmnI GAANNNNTTC 2 cut(s) 242, 529
XspI CTAG 3 cut(s) 257, 564, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.