Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011650

Physical Location & Seq

Genomic Coordinates Reverse (-)

8889271 .. 8891128

Gene Structure 1858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G25530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGGTTTGGATTATTACGATATATTGAAAGTGAATAGGAACGCAACAGAGGATGATCTAAAGAAATCTTACAGAAAATTGGCTATGAAATGGCATCCTGACAAAAACCCTAACACCAAAACAGAAGCTGAAGCCAAGTTTAAGCAAATCTCTGAGGCTTATGAGGCGAAATATGAGGTAATGTTTCAGGTTTTGAGTGATCCGCAGAAGCGAGCGGTGTATGATCAATACGGGGAAGAAGGATTAAGCGATATGCCACCTCCCGGGAGCACGGGAAACAATGGAAGAGCGGGAGGTTTTAACCCTAGAAATGCGGAAGATATATTTGCAGAGTTCTTTGGAAGTAGTCCATTTGGATTTGGTTCAGCTGGTGGTCCTGGAAGGTCAATGAGGTTTCAATCAGACGGTGGAGGAGGAATGTTTGGCGGGTTTGGTGGTGGAAACAACGGTAGCGAAAACAATATATTCAGAACTTACAGTGAAGGCACTCCTGCGCCTAAGAAACCTCCACCGGTTGAGAGTAAATTGCCTTGTAGCCTTGAAGAGTTGTATTCTGGATCAACTAGGAAAATGAAGATCTCTAGATCCATTGTTGATGCTAATGGGAGACAAGCGCAAGAGACAGAGATTTTGACGATTGTTGTGAAACCAGGATGGAAAAAAGGGACAAAGATAAAGTTTCCAGACAAAGGAAATGAGCAAGTGAATCAGTTACCAGCTGATTTGGTGTTTGTAATAGACGAGAAACCACATGATTTGTTCACGAGAGATGGGAATGATCTCATCACAAGCAGAAGAGTAACGCTTGCAGAAGCTATAGGAGGAACAACTGTGAATATCAACACCCTCGATGGGCGGAATCTACCCGTTGGTGTCGCGGAAATCGTGAGTCCCGGGTATGAGTTTGTGGTTCCTGGAGAAGGGATGCCAATAGCTAAAGAACCAAGAAACAAAGGTGATCTTAAGATTAAGTTCGATGTTCAGTTTCCCGCAAGATTGACAACGGAGCAGAAATCCGCTCTCAAGCGGGTCTTAGCGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

347

Amino Acids

37.94

Weight (kDa)

8.36

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 75	1.6e-23	DnaJ domain
DnaJ_C	PF01556	172 - 330	2.8e-39	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25530 AT5G25530
fragaria_vesca	FvH4_2g30150
malus_domestica	MD02G1290100.v1.1 MD07G1036900.v1.1 MD08G1136700.v1.1
prunus_persica	Prupe.1G466900_v2.0.a1 Prupe.1G466900_v2.0.a1
pyrus_communis	pycom08g11550
rosa_chinensis	RchiOBHm_Chr6g0312781
rosa_laevigata	RLG00000010300
rosa_multiflora	Rmu_co8483235.1_g000001
rosa_roxburghii	Rroxscaffold_7G00156500
rosa_rugosa	Rorug06G0399600
rosa_samantha	Rh6AG516600 Rh6BG527900 Rh6CG532700 Rh6DG518900
rosa_wichuraiana	Rw6G044870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	215, 290, 1019
AccII	CGCG	1 cut(s)	878
AclWI	GGATC	3 cut(s)	194, 565, 579
AcuI	CTGAAG	1 cut(s)	150
AfiI	CCNNNNNNNGG	4 cut(s)	263, 689, 852, 920
AflII	CTTAAG	1 cut(s)	962
AgeI	ACCGGT	1 cut(s)	511
AgsI	TTSAA	3 cut(s)	28, 398, 542
AjnI	CCWGG	3 cut(s)	376, 649, 913
AluBI	AGCT	5 cut(s)	128, 368, 719, 815, 935
AluI	AGCT	5 cut(s)	128, 368, 719, 815, 935
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	2 cut(s)	601, 614
AlwI	GGATC	3 cut(s)	194, 565, 579
AlwNI	CAGNNNCTG	1 cut(s)	128
Ama87I	CYCGRG	2 cut(s)	263, 893
ArsI	GACNNNNNNTTYG	2 cut(s)	613, 645
AsiGI	ACCGGT	1 cut(s)	511
AspLEI	GCGC	2 cut(s)	496, 616
AspS9I	GGNCC	1 cut(s)	374
AsuC2I	CCSGG	4 cut(s)	264, 265, 894, 895
AsuHPI	GGTGA	1 cut(s)	968
AvaI	CYCGRG	2 cut(s)	263, 893
AvaII	GGWCC	1 cut(s)	374
BauI	CACGAG	1 cut(s)	763
Bbv12I	GWGCWC	1 cut(s)	272
BccI	CCATC	3 cut(s)	648, 764, 845
BciT130I	CCWGG	3 cut(s)	378, 651, 915
BclI	TGATCA	1 cut(s)	223
BcnI	CCSGG	4 cut(s)	264, 265, 894, 895
BcoDI	GTCTC	2 cut(s)	601, 614
BfaI	CTAG	3 cut(s)	306, 564, 582
BfmI	CTRYAG	1 cut(s)	816
BfrI	CTTAAG	1 cut(s)	962
BglII	AGATCT	1 cut(s)	576
Bme1390I	CCNGG	7 cut(s)	264, 265, 378, 651, 894, 895, 915
Bme18I	GGWCC	1 cut(s)	374
BmeT110I	CYCGRG	2 cut(s)	263, 893
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	1 cut(s)	912
BmrFI	CCNGG	7 cut(s)	264, 265, 378, 651, 894, 895, 915
BmsI	GCATC	3 cut(s)	103, 586, 915
BpmI	CTGGAG	1 cut(s)	936
BpuEI	CTTGAG	1 cut(s)	1007
BpuMI	CCSGG	4 cut(s)	264, 265, 894, 895
BsaJI	CCNNGG	2 cut(s)	263, 893
BsaWI	WCCGGW	1 cut(s)	511
Bsc4I	CCNNNNNNNGG	4 cut(s)	263, 689, 852, 920
Bse118I	RCCGGY	1 cut(s)	511
BseBI	CCWGG	3 cut(s)	378, 651, 915
BseDI	CCNNGG	2 cut(s)	263, 893
BseGI	GGATG	4 cut(s)	58, 94, 659, 930
BseLI	CCNNNNNNNGG	4 cut(s)	263, 689, 852, 920
BseMII	CTCAG	1 cut(s)	144
BseRI	GAGGAG	1 cut(s)	426
Bsh1236I	CGCG	1 cut(s)	878
BshTI	ACCGGT	1 cut(s)	511
BsiHKAI	GWGCWC	1 cut(s)	272
BsiHKCI	CYCGRG	2 cut(s)	263, 893
BsiSI	CCGG	3 cut(s)	264, 512, 894
BslFI	GGGAC	2 cut(s)	679, 876
BslI	CCNNNNNNNGG	4 cut(s)	263, 689, 852, 920
BsmAI	GTCTC	2 cut(s)	601, 614
BsmFI	GGGAC	2 cut(s)	679, 876
BsoBI	CYCGRG	2 cut(s)	263, 893
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp143I	GATC	8 cut(s)	55, 199, 223, 557, 576, 584, 778, 958
BspCNI	CTCAG	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	878
BspLI	GGNNCC	1 cut(s)	912
BspPI	GGATC	3 cut(s)	194, 565, 579
BspQI	GCTCTTC	1 cut(s)	280
BspTI	CTTAAG	1 cut(s)	962
BsrBI	CCGCTC	3 cut(s)	215, 290, 1019
BsrFI	RCCGGY	1 cut(s)	511
BssAI	RCCGGY	1 cut(s)	511
BssECI	CCNNGG	2 cut(s)	263, 893
BssMI	GATC	8 cut(s)	55, 199, 223, 557, 576, 584, 778, 958
BssSI	CACGAG	1 cut(s)	763
Bst2BI	CACGAG	1 cut(s)	763
Bst2UI	CCWGG	3 cut(s)	378, 651, 915
Bst4CI	ACNGT	4 cut(s)	407, 449, 479, 832
Bst6I	CTCTTC	3 cut(s)	280, 537, 790
BstAFI	CTTAAG	1 cut(s)	962
BstC8I	GCNNGC	2 cut(s)	213, 807
BstDEI	CTNAG	3 cut(s)	153, 498, 1033
BstENI	CCTNNNNNAGG	1 cut(s)	918
BstF5I	GGATG	4 cut(s)	58, 94, 659, 930
BstFNI	CGCG	1 cut(s)	878
BstHHI	GCGC	2 cut(s)	496, 616
BstKTI	GATC	8 cut(s)	58, 202, 226, 560, 579, 587, 781, 961
BstMAI	GTCTC	2 cut(s)	601, 614
BstMBI	GATC	8 cut(s)	55, 199, 223, 557, 576, 584, 778, 958
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	3 cut(s)	378, 651, 915
BstSCI	CCNGG	7 cut(s)	262, 263, 376, 649, 892, 893, 913
BstSFI	CTRYAG	1 cut(s)	816
BstUI	CGCG	1 cut(s)	878
BstX2I	RGATCY	2 cut(s)	576, 584
BstYI	RGATCY	2 cut(s)	576, 584
BtsCI	GGATG	4 cut(s)	58, 94, 659, 930
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	2 cut(s)	213, 807
CaiI	CAGNNNCTG	1 cut(s)	128
CfoI	GCGC	2 cut(s)	496, 616
Cfr10I	RCCGGY	1 cut(s)	511
Cfr13I	GGNCC	1 cut(s)	374
Cfr9I	CCCGGG	2 cut(s)	263, 893
CspAI	ACCGGT	1 cut(s)	511
CspCI	CAANNNNNGTGG	2 cut(s)	738, 773
CviAII	CATG	1 cut(s)	752
CviJI	RGCY	9 cut(s)	83, 128, 134, 158, 368, 537, 719, 815, 935
CviKI_1	RGCY	9 cut(s)	83, 128, 134, 158, 368, 537, 719, 815, 935
DdeI	CTNAG	3 cut(s)	153, 498, 1033
DpnI	GATC	8 cut(s)	57, 201, 225, 559, 578, 586, 780, 960
DpnII	GATC	8 cut(s)	55, 199, 223, 557, 576, 584, 778, 958
Eam1104I	CTCTTC	3 cut(s)	280, 537, 790
EarI	CTCTTC	3 cut(s)	280, 537, 790
EciI	GGCGGA	1 cut(s)	871
Eco47I	GGWCC	1 cut(s)	374
Eco57I	CTGAAG	1 cut(s)	150
Eco88I	CYCGRG	2 cut(s)	263, 893
EcoNI	CCTNNNNNAGG	1 cut(s)	918
EcoRII	CCWGG	3 cut(s)	376, 649, 913
FaeI	CATG	1 cut(s)	755
FalI	AAGNNNNNCTT	3 cut(s)	945, 977, 1016
FaqI	GGGAC	2 cut(s)	679, 876
FatI	CATG	1 cut(s)	751
FauI	CCCGC	5 cut(s)	283, 419, 997, 1020, 1030
FbaI	TGATCA	1 cut(s)	223
FokI	GGATG	4 cut(s)	65, 81, 666, 937
FspBI	CTAG	3 cut(s)	306, 564, 582
GlaI	GCGC	2 cut(s)	495, 615
GsuI	CTGGAG	1 cut(s)	936
HapII	CCGG	3 cut(s)	264, 512, 894
HhaI	GCGC	2 cut(s)	496, 616
Hin1II	CATG	1 cut(s)	755
Hin6I	GCGC	2 cut(s)	494, 614
HinP1I	GCGC	2 cut(s)	494, 614
HinfI	GANTC	3 cut(s)	706, 859, 889
HpaII	CCGG	3 cut(s)	264, 512, 894
HphI	GGTGA	1 cut(s)	968
Hpy166II	GTNNAC	1 cut(s)	762
Hpy188I	TCNGA	3 cut(s)	154, 403, 470
Hpy188III	TCNNGA	6 cut(s)	98, 555, 582, 683, 763, 886
Hpy8I	GTNNAC	1 cut(s)	762
HpyAV	CCTTC	4 cut(s)	233, 375, 476, 914
HpyCH4III	ACNGT	4 cut(s)	407, 449, 479, 832
HpyCH4V	TGCA	2 cut(s)	329, 809
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	3 cut(s)	153, 498, 1033
Hsp92II	CATG	1 cut(s)	755
HspAI	GCGC	2 cut(s)	494, 614
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	8 cut(s)	55, 199, 223, 557, 576, 584, 778, 958
LguI	GCTCTTC	1 cut(s)	280
LmnI	GCTCC	2 cut(s)	267, 1006
LweI	GCATC	3 cut(s)	103, 586, 915
MaeI	CTAG	3 cut(s)	306, 564, 582
MaeIII	GTNAC	2 cut(s)	711, 799
MalI	GATC	8 cut(s)	57, 201, 225, 559, 578, 586, 780, 960
MbiI	CCGCTC	3 cut(s)	215, 290, 1019
MboI	GATC	8 cut(s)	55, 199, 223, 557, 576, 584, 778, 958
MboII	GAAGA	6 cut(s)	248, 297, 329, 554, 586, 807
MflI	RGATCY	2 cut(s)	576, 584
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	2 cut(s)	77, 524
MlyI	GAGTC	1 cut(s)	898
MseI	TTAA	5 cut(s)	141, 245, 300, 963, 969
MspA1I	CMGCKG	2 cut(s)	368, 719
MspCI	CTTAAG	1 cut(s)	962
MspI	CCGG	3 cut(s)	264, 512, 894
MspR9I	CCNGG	7 cut(s)	264, 265, 378, 651, 894, 895, 915
MvaI	CCWGG	3 cut(s)	378, 651, 915
MvnI	CGCG	1 cut(s)	878
MwoI	GCNNNNNNNGC	1 cut(s)	164
NciI	CCSGG	4 cut(s)	264, 265, 894, 895
NdeII	GATC	8 cut(s)	55, 199, 223, 557, 576, 584, 778, 958
NlaIII	CATG	1 cut(s)	755
NlaIV	GGNNCC	1 cut(s)	912
PciSI	GCTCTTC	1 cut(s)	280
PcsI	WCGNNNNNNNCGW	1 cut(s)	882
PfeI	GAWTC	2 cut(s)	706, 859
PfoI	TCCNGGA	2 cut(s)	376, 913
PinAI	ACCGGT	1 cut(s)	511
PleI	GAGTC	1 cut(s)	897
PpsI	GAGTC	1 cut(s)	897
Psp6I	CCWGG	3 cut(s)	376, 649, 913
PspGI	CCWGG	3 cut(s)	376, 649, 913
PspN4I	GGNNCC	1 cut(s)	912
PspPI	GGNCC	1 cut(s)	374
PstNI	CAGNNNCTG	1 cut(s)	128
PsuI	RGATCY	2 cut(s)	576, 584
PvuII	CAGCTG	2 cut(s)	368, 719
SapI	GCTCTTC	1 cut(s)	280
SaqAI	TTAA	5 cut(s)	141, 245, 300, 963, 969
Sau3AI	GATC	8 cut(s)	55, 199, 223, 557, 576, 584, 778, 958
Sau96I	GGNCC	1 cut(s)	374
SchI	GAGTC	1 cut(s)	898
ScrFI	CCNGG	7 cut(s)	264, 265, 378, 651, 894, 895, 915
SduI	GDGCHC	1 cut(s)	272
SfaNI	GCATC	3 cut(s)	103, 586, 915
SfcI	CTRYAG	1 cut(s)	816
SinI	GGWCC	1 cut(s)	374
SmaI	CCCGGG	2 cut(s)	265, 895
SmlI	CTYRAG	2 cut(s)	962, 1022
SmoI	CTYRAG	2 cut(s)	962, 1022
Sse9I	AATT	2 cut(s)	77, 524
SspMI	CTAG	3 cut(s)	306, 564, 582
StyD4I	CCNGG	7 cut(s)	262, 263, 376, 649, 892, 893, 913
TaaI	ACNGT	4 cut(s)	407, 449, 479, 832
TaqI	TCGA	2 cut(s)	849, 975
TasI	AATT	2 cut(s)	77, 524
TfiI	GAWTC	2 cut(s)	706, 859
Tru1I	TTAA	5 cut(s)	141, 245, 300, 963, 969
Tru9I	TTAA	5 cut(s)	141, 245, 300, 963, 969
TscAI	CASTG	1 cut(s)	484
TspDTI	ATGAA	2 cut(s)	101, 587
TspGWI	ACGGA	1 cut(s)	1019
TspMI	CCCGGG	2 cut(s)	263, 893
TspRI	CASTG	1 cut(s)	484
Vha464I	CTTAAG	1 cut(s)	962
VpaK11BI	GGWCC	1 cut(s)	374
XagI	CCTNNNNNAGG	1 cut(s)	918
XbaI	TCTAGA	1 cut(s)	581
XmaI	CCCGGG	2 cut(s)	263, 893
XspI	CTAG	3 cut(s)	306, 564, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.