Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011650

Physical Location & Seq

Genomic Coordinates Forward (+)

54442212 .. 54446616

Gene Structure 4405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0399600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGCAGAGAGCAAAGGGTTTTGAAGCAGCTTTGAAGAGGTGTGTGAATCAGCATCTCAGAGCCTTTTCTGCTCAGCCAAACTATGCCCAACATCACCACGATGACCCCCAAGACCTGGTCATGGTTGAGGGGAGGACCAAATCAAGAGCAGCCATTCTCAATAGACCATCTGCACTAAATGCCCTCAATACTGCTATGGTATCTCGCCTCAAGAGACTTTATGAATCATGGGAAGATAACCCGGATATTGGTTTTGTCTTGATGAAGGGTAATGGGAGAGCCTTCTGTTCTGGTGCGGATGCTGTTACCCTTTTTCAACTAGTCAATCAAGGGAAAGTTGAGGAATGCAGAAAATTTTTTGAGACATTGTATAAGTTTGTATATATTCAAGGAACATACTTGAAGCCACATGTAGCTATCTTGGATGGTATAACTATGGGAGGTGGGGCTGGGATTTCACTCCCAGGAATGTTTCGTGTGGTGACTGATAAAACTGTTTTTTGCAATCCAGAGGCTCAAATAGGTTTCCATCCTGATGCAGGAGCTTCATATTATCTTTCTCGTCTACCTGGCTACTTAGGAGAATACTTAGCTCTTACAGGGGACAAGCTTAATGGTGTAGAGATGATTGCATGTGGCCTTGCCACTCATTATGTATTAAATGCAAGACTTGCTATGGTTGAAGAACGCGTGGGTAAATTGGTCACAGATGAACCATCTGTTATAAAAGCATCTCTTGCAGAGTATGGTGACCTTGTTAATCTAGACCAGAAGAGTATACTTGCTAAGCTTGAAGGGATTGACAGGTGTTTCAGCCATGACACGGTTGAGGAAATTATTGATGCTTTGGAAAAGGAAGCTGCTGATTCTTATGATGAATGGTGCACCACAGCCCTCAAGAAACTAAAAGAAGCCTCCCCTTTGAGTTTGAAAGTTTCCCTACGATCTATACGTGAAGGCAGATTTGAATCTCTTCATCAATGTCTGGCTCGTGAATACCGGATATCCCTAAATGGAATTTCCAAACGGGTCTCAAGTGACTTCTGTGAGGGTGTTTGGGCGAGATTAGTGGAAAAGGACTTTGCACCCAAGTGGGACCCTCCTAGTTTGAAAGAAGTGTCTAAAGACATGGTTGACTGCTATTTCTCTCCGCTCCCTGAAGTTGAGCCTGAGCTGGAGTTGCCAACCGCGTCGCGAGAGCCATTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

403

Amino Acids

44.97

Weight (kDa)

5.81

Isoelectric Point (pI)

27.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	49 - 382	8.4e-117	Enoyl-CoA hydratase/isomerase
ECH_1	PF00378	53 - 246	3.3e-21	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25530 AT5G25530
fragaria_vesca	FvH4_2g30150
malus_domestica	MD02G1290100.v1.1 MD07G1036900.v1.1 MD08G1136700.v1.1
prunus_persica	Prupe.1G466900_v2.0.a1 Prupe.1G466900_v2.0.a1
pyrus_communis	pycom08g11550
rosa_chinensis	RchiOBHm_Chr6g0312781
rosa_laevigata	RLG00000010300
rosa_multiflora	Rmu_co8483235.1_g000001
rosa_roxburghii	Rroxscaffold_7G00156500
rosa_rugosa	Rorug06G0399600
rosa_samantha	Rh6AG516600 Rh6BG527900 Rh6CG532700 Rh6DG518900
rosa_wichuraiana	Rw6G044870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	725
AccB7I	CCANNNNNTGG	1 cut(s)	115
AccBSI	CCGCTC	1 cut(s)	1153
AccI	GTMKAC	2 cut(s)	565, 778
AccII	CGCG	3 cut(s)	690, 1190, 1195
AciI	CCGC	3 cut(s)	296, 1151, 1188
AcsI	RAATTY	2 cut(s)	353, 1017
AcuI	CTGAAG	1 cut(s)	1179
AfiI	CCNNNNNNNGG	5 cut(s)	115, 121, 248, 539, 823
AflIII	ACRYGT	2 cut(s)	409, 688
AhlI	ACTAGT	1 cut(s)	319
AjnI	CCWGG	3 cut(s)	114, 463, 568
AleI	CACNNNNGTG	1 cut(s)	1090
AluBI	AGCT	8 cut(s)	29, 416, 545, 593, 610, 790, 860, 1174
AluI	AGCT	8 cut(s)	29, 416, 545, 593, 610, 790, 860, 1174
Alw21I	GWGCWC	1 cut(s)	887
Alw26I	GTCTC	3 cut(s)	208, 356, 1036
Alw44I	GTGCAC	1 cut(s)	883
AoxI	GGCC	1 cut(s)	637
ApaLI	GTGCAC	1 cut(s)	883
ApeKI	GCWGC	3 cut(s)	26, 149, 860
ApoI	RAATTY	2 cut(s)	353, 1017
Asp700I	GAANNNNTTC	1 cut(s)	972
AspS9I	GGNCC	2 cut(s)	135, 1096
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	3 cut(s)	86, 493, 761
AvaII	GGWCC	2 cut(s)	135, 1096
BaeGI	GKGCMC	1 cut(s)	887
BauI	CACGAG	1 cut(s)	990
Bbv12I	GWGCWC	1 cut(s)	887
BbvI	GCAGC	3 cut(s)	38, 161, 847
BccI	CCATC	4 cut(s)	175, 419, 537, 724
BciT130I	CCWGG	3 cut(s)	116, 465, 570
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	3 cut(s)	208, 356, 1036
BcuI	ACTAGT	1 cut(s)	319
BfaI	CTAG	3 cut(s)	320, 764, 1104
BisI	GCNGC	3 cut(s)	27, 150, 861
BlpI	GCTNAGC	2 cut(s)	72, 786
BlsI	GCNGC	3 cut(s)	28, 151, 862
Bme1390I	CCNGG	4 cut(s)	116, 242, 465, 570
Bme18I	GGWCC	2 cut(s)	135, 1096
BmgT120I	GGNCC	2 cut(s)	135, 1096
BmiI	GGNNCC	2 cut(s)	1097, 1098
BmrFI	CCNGG	4 cut(s)	116, 242, 465, 570
BmsI	GCATC	5 cut(s)	61, 289, 526, 740, 832
BpmI	CTGGAG	1 cut(s)	1196
Bpu10I	CCTNAGC	1 cut(s)	1170
Bpu1102I	GCTNAGC	2 cut(s)	72, 786
BpuEI	CTTGAG	3 cut(s)	194, 881, 1018
BpuMI	CCSGG	1 cut(s)	242
BsaAI	YACGTR	1 cut(s)	953
BsaBI	GATNNNNATC	1 cut(s)	967
BsaI	GGTCTC	1 cut(s)	1036
BsaJI	CCNNGG	1 cut(s)	463
BsaWI	WCCGGW	1 cut(s)	999
Bsc4I	CCNNNNNNNGG	5 cut(s)	115, 121, 248, 539, 823
Bse8I	GATNNNNATC	1 cut(s)	967
BseBI	CCWGG	3 cut(s)	116, 465, 570
BseDI	CCNNGG	1 cut(s)	463
BseGI	GGATG	3 cut(s)	304, 430, 529
BseJI	GATNNNNATC	1 cut(s)	967
BseLI	CCNNNNNNNGG	5 cut(s)	115, 121, 248, 539, 823
BseMII	CTCAG	3 cut(s)	70, 86, 1161
BseSI	GKGCMC	1 cut(s)	887
BseXI	GCAGC	3 cut(s)	38, 161, 847
BseYI	CCCAGC	1 cut(s)	449
BsgI	GTGCAG	1 cut(s)	156
Bsh1236I	CGCG	3 cut(s)	690, 1190, 1195
BshFI	GGCC	1 cut(s)	639
BsiHKAI	GWGCWC	1 cut(s)	887
BsiSI	CCGG	2 cut(s)	242, 1000
BslFI	GGGAC	2 cut(s)	617, 1109
BslI	CCNNNNNNNGG	5 cut(s)	115, 121, 248, 539, 823
BsmAI	GTCTC	3 cut(s)	208, 356, 1036
BsmFI	GGGAC	2 cut(s)	617, 1109
BsmI	GAATGC	1 cut(s)	350
BsnI	GGCC	1 cut(s)	639
Bso31I	GGTCTC	1 cut(s)	1036
Bsp1286I	GDGCHC	1 cut(s)	887
Bsp143I	GATC	1 cut(s)	944
Bsp1720I	GCTNAGC	2 cut(s)	72, 786
Bsp68I	TCGCGA	1 cut(s)	1195
BspACI	CCGC	3 cut(s)	296, 1151, 1188
BspANI	GGCC	1 cut(s)	639
BspCNI	CTCAG	3 cut(s)	69, 85, 1162
BspFNI	CGCG	3 cut(s)	690, 1190, 1195
BspLI	GGNNCC	2 cut(s)	1097, 1098
BspTNI	GGTCTC	1 cut(s)	1036
BsrBI	CCGCTC	1 cut(s)	1153
BssECI	CCNNGG	1 cut(s)	463
BssMI	GATC	1 cut(s)	944
BssNAI	GTATAC	1 cut(s)	779
BssSI	CACGAG	1 cut(s)	990
Bst1107I	GTATAC	1 cut(s)	779
Bst2BI	CACGAG	1 cut(s)	990
Bst2UI	CCWGG	3 cut(s)	116, 465, 570
Bst4CI	ACNGT	2 cut(s)	496, 826
Bst6I	CTCTTC	3 cut(s)	29, 767, 978
BstAPI	GCANNNNNTGC	3 cut(s)	179, 671, 737
BstBAI	YACGTR	1 cut(s)	953
BstDEI	CTNAG	6 cut(s)	56, 72, 577, 589, 786, 1170
BstEII	GGTNACC	1 cut(s)	749
BstENI	CCTNNNNNAGG	1 cut(s)	537
BstF5I	GGATG	3 cut(s)	304, 430, 529
BstFNI	CGCG	3 cut(s)	690, 1190, 1195
BstKTI	GATC	1 cut(s)	947
BstMAI	GTCTC	3 cut(s)	208, 356, 1036
BstMBI	GATC	1 cut(s)	944
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 179, 671, 737, 1180
BstNI	CCWGG	3 cut(s)	116, 465, 570
BstNSI	RCATGY	2 cut(s)	413, 636
BstPI	GGTNACC	1 cut(s)	749
BstSCI	CCNGG	4 cut(s)	114, 240, 463, 568
BstSLI	GKGCMC	1 cut(s)	887
BstUI	CGCG	3 cut(s)	690, 1190, 1195
BstV1I	GCAGC	3 cut(s)	38, 161, 847
BstZ17I	GTATAC	1 cut(s)	779
BsuRI	GGCC	1 cut(s)	639
BtsCI	GGATG	3 cut(s)	304, 430, 529
BtuMI	TCGCGA	1 cut(s)	1195
Cfr13I	GGNCC	2 cut(s)	135, 1096
CseI	GACGC	1 cut(s)	1179
CsiI	ACCWGGT	1 cut(s)	114
CviAII	CATG	6 cut(s)	121, 228, 410, 633, 818, 1129
DdeI	CTNAG	6 cut(s)	56, 72, 577, 589, 786, 1170
DpnI	GATC	1 cut(s)	946
DpnII	GATC	1 cut(s)	944
Eam1104I	CTCTTC	3 cut(s)	29, 767, 978
EarI	CTCTTC	3 cut(s)	29, 767, 978
Eco31I	GGTCTC	1 cut(s)	1036
Eco32I	GATATC	1 cut(s)	1005
Eco47I	GGWCC	2 cut(s)	135, 1096
Eco57I	CTGAAG	1 cut(s)	1179
Eco91I	GGTNACC	1 cut(s)	749
EcoNI	CCTNNNNNAGG	1 cut(s)	537
EcoO109I	RGGNCCY	1 cut(s)	1096
EcoO65I	GGTNACC	1 cut(s)	749
EcoRII	CCWGG	3 cut(s)	114, 463, 568
EcoRV	GATATC	1 cut(s)	1005
FaeI	CATG	6 cut(s)	124, 231, 413, 636, 821, 1132
FalI	AAGNNNNNCTT	2 cut(s)	720, 752
FaqI	GGGAC	2 cut(s)	617, 1109
FatI	CATG	6 cut(s)	120, 227, 409, 632, 817, 1128
FblI	GTMKAC	2 cut(s)	565, 778
Fnu4HI	GCNGC	3 cut(s)	27, 150, 861
FokI	GGATG	3 cut(s)	311, 437, 516
Fsp4HI	GCNGC	3 cut(s)	27, 150, 861
FspBI	CTAG	3 cut(s)	320, 764, 1104
GluI	GCNGC	3 cut(s)	27, 150, 861
GsaI	CCCAGC	1 cut(s)	453
GsuI	CTGGAG	1 cut(s)	1196
HaeIII	GGCC	1 cut(s)	639
HapII	CCGG	2 cut(s)	242, 1000
HgaI	GACGC	1 cut(s)	1179
Hin1II	CATG	6 cut(s)	124, 231, 413, 636, 821, 1132
HincII	GTYRAC	1 cut(s)	1135
HindII	GTYRAC	1 cut(s)	1135
HindIII	AAGCTT	2 cut(s)	608, 788
HinfI	GANTC	4 cut(s)	46, 224, 866, 968
HpaII	CCGG	2 cut(s)	242, 1000
HphI	GGTGA	3 cut(s)	86, 493, 761
Hpy166II	GTNNAC	4 cut(s)	566, 779, 885, 1135
Hpy188I	TCNGA	1 cut(s)	59
Hpy188III	TCNNGA	9 cut(s)	144, 211, 259, 509, 533, 764, 898, 992, 1194
Hpy8I	GTNNAC	4 cut(s)	566, 779, 885, 1135
Hpy99I	CGWCG	1 cut(s)	1195
HpyAV	CCTTC	4 cut(s)	259, 292, 788, 950
HpyCH4III	ACNGT	2 cut(s)	496, 826
HpyCH4IV	ACGT	1 cut(s)	952
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 179, 671, 737, 1180
HpyF3I	CTNAG	6 cut(s)	56, 72, 577, 589, 786, 1170
HpySE526I	ACGT	1 cut(s)	952
Hsp92II	CATG	6 cut(s)	124, 231, 413, 636, 821, 1132
KflI	GGGWCCC	1 cut(s)	1096
Kzo9I	GATC	1 cut(s)	944
LmnI	GCTCC	2 cut(s)	542, 1158
Lsp1109I	GCAGC	3 cut(s)	38, 161, 847
LweI	GCATC	5 cut(s)	61, 289, 526, 740, 832
MabI	ACCWGGT	1 cut(s)	114
MaeI	CTAG	3 cut(s)	320, 764, 1104
MaeII	ACGT	1 cut(s)	952
MaeIII	GTNAC	5 cut(s)	304, 481, 703, 749, 1037
MalI	GATC	1 cut(s)	946
MbiI	CCGCTC	1 cut(s)	1153
MboI	GATC	1 cut(s)	944
MboII	GAAGA	5 cut(s)	46, 245, 695, 784, 965
MhlI	GDGCHC	1 cut(s)	887
MluCI	AATT	4 cut(s)	353, 698, 834, 1017
MluI	ACGCGT	1 cut(s)	688
MroXI	GAANNNNTTC	1 cut(s)	972
MseI	TTAA	3 cut(s)	612, 659, 759
MslI	CAYNNNNRTG	3 cut(s)	99, 534, 1090
MspI	CCGG	2 cut(s)	242, 1000
MspR9I	CCNGG	4 cut(s)	116, 242, 465, 570
Mva1269I	GAATGC	1 cut(s)	350
MvaI	CCWGG	3 cut(s)	116, 465, 570
MvnI	CGCG	3 cut(s)	690, 1190, 1195
MwoI	GCNNNNNNNGC	5 cut(s)	68, 179, 671, 737, 1180
NciI	CCSGG	1 cut(s)	242
NdeII	GATC	1 cut(s)	944
NlaIII	CATG	6 cut(s)	124, 231, 413, 636, 821, 1132
NlaIV	GGNNCC	2 cut(s)	1097, 1098
NmuCI	GTSAC	4 cut(s)	481, 703, 749, 1037
NruI	TCGCGA	1 cut(s)	1195
NspI	RCATGY	2 cut(s)	413, 636
OliI	CACNNNNGTG	1 cut(s)	1090
PciI	ACATGT	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	1 cut(s)	949
PctI	GAATGC	1 cut(s)	350
PdmI	GAANNNNTTC	1 cut(s)	972
PfeI	GAWTC	4 cut(s)	46, 224, 866, 968
PflFI	GACNNNGTC	1 cut(s)	116
PflMI	CCANNNNNTGG	1 cut(s)	115
PkrI	GCNGC	3 cut(s)	28, 151, 862
Ppu21I	YACGTR	1 cut(s)	953
PpuMI	RGGWCCY	1 cut(s)	1096
PscI	ACATGT	1 cut(s)	409
PsiI	TTATAA	1 cut(s)	725
Psp5II	RGGWCCY	1 cut(s)	1096
Psp6I	CCWGG	3 cut(s)	114, 463, 568
PspEI	GGTNACC	1 cut(s)	749
PspFI	CCCAGC	1 cut(s)	449
PspGI	CCWGG	3 cut(s)	114, 463, 568
PspN4I	GGNNCC	2 cut(s)	1097, 1098
PspPI	GGNCC	2 cut(s)	135, 1096
PspPPI	RGGWCCY	1 cut(s)	1096
PsyI	GACNNNGTC	1 cut(s)	116
RruI	TCGCGA	1 cut(s)	1195
RseI	CAYNNNNRTG	3 cut(s)	99, 534, 1090
SaqAI	TTAA	3 cut(s)	612, 659, 759
SatI	GCNGC	3 cut(s)	27, 150, 861
Sau3AI	GATC	1 cut(s)	944
Sau96I	GGNCC	2 cut(s)	135, 1096
ScrFI	CCNGG	4 cut(s)	116, 242, 465, 570
SduI	GDGCHC	1 cut(s)	887
SexAI	ACCWGGT	1 cut(s)	114
SfaNI	GCATC	5 cut(s)	61, 289, 526, 740, 832
SinI	GGWCC	2 cut(s)	135, 1096
SmiMI	CAYNNNNRTG	3 cut(s)	99, 534, 1090
SmlI	CTYRAG	3 cut(s)	209, 896, 1033
SmoI	CTYRAG	3 cut(s)	209, 896, 1033
SpeI	ACTAGT	1 cut(s)	319
Sse9I	AATT	4 cut(s)	353, 698, 834, 1017
SsiI	CCGC	3 cut(s)	296, 1151, 1188
SspMI	CTAG	3 cut(s)	320, 764, 1104
StyD4I	CCNGG	4 cut(s)	114, 240, 463, 568
TaaI	ACNGT	2 cut(s)	496, 826
TaiI	ACGT	1 cut(s)	955
TasI	AATT	4 cut(s)	353, 698, 834, 1017
TfiI	GAWTC	4 cut(s)	46, 224, 866, 968
Tru1I	TTAA	3 cut(s)	612, 659, 759
Tru9I	TTAA	3 cut(s)	612, 659, 759
TseFI	GTSAC	4 cut(s)	481, 703, 749, 1037
TseI	GCWGC	3 cut(s)	26, 149, 860
Tsp45I	GTSAC	4 cut(s)	481, 703, 749, 1037
TspDTI	ATGAA	6 cut(s)	237, 278, 537, 726, 891, 965
Tth111I	GACNNNGTC	1 cut(s)	116
Van91I	CCANNNNNTGG	1 cut(s)	115
VneI	GTGCAC	1 cut(s)	883
VpaK11BI	GGWCC	2 cut(s)	135, 1096
XagI	CCTNNNNNAGG	1 cut(s)	537
XapI	RAATTY	2 cut(s)	353, 1017
XbaI	TCTAGA	1 cut(s)	763
XceI	RCATGY	2 cut(s)	413, 636
XmiI	GTMKAC	2 cut(s)	565, 778
XmnI	GAANNNNTTC	1 cut(s)	972
XspI	CTAG	3 cut(s)	320, 764, 1104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.