Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011650

Physical Location & Seq

Genomic Coordinates Reverse (-)

23325973 .. 23328164

Gene Structure 2192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g30150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGGTGTGGATTACTATAACATATTGAAGGTGAATAGGAATGCTACAGAAGACGATCTCAAAAAATCATATAGAAGGCTGGCCATGAAATGGCACCCTGACAAGAATCCCAATGACAAGAAAGAAGCTGAAGCCAAATTCAAGCAGATTTCTGAGGCCTATGAGGTCTTGAGTGATCCTCAGAAGAGGCAAATATATGATCAGCATGGAGAGGAAGGATTGAAAGACATGCCACCACCTGGAAGTGGTGGATTCCCATTTGGTGGTGGCAGTGGCGGTAGCTCAAAAGGATTCAATCCTAGAAATGCAGAGGATATTTTTGCAGAATTCTTTGGAAGTAGTCCTTTTGGATTTGGATCATCAGGACCCGGCAGATCTTCAAGATTCTCGTCCGATGGTGGAGGGACGTTTGGGGGATTTGGTGGAAGCAACGAAAATGGTTTTCGATCATATAGTGAGAACGTTACACCAAAGAAACCACCAGCAGTTGAGAGCAAGTTGCCATGCAGCCTTGAGGAGCTGTATACTGGTTCAACAAGGAAAATGAAAATCTCTAGAACTGTGGTTGATGCAAATGGGCGTCAAGCGCCGGAAACAGAGATATTAACCATTGAAGTGAAGCCTGGATGGAAGAAAGGTACCAAGATCACATTTCCGGATAAAGGAAACGAACAGCCTGGCCAGTTACCTGCAGACCTTGTTTTTGTGATCGATGAGAAGCCTCATGATGTATACATAAGAGATAGCAATGACCTCCTCATTACAAAAAAGGTGTCATTAGCTGAGGGATTGGGTGGAACTACAGTGCAGCTCAAAACGCTAGATGGGCGTGACCTATCAGTCCCGGTGACTGAAATAGTCAGCCCTGGCTATGAGCTTGTTGTTGCCAGGGAGGGTATGCCGATAGCGAAAGAGCCAGGGAATAGGGGTGATTTGAAGATCAAATTTGAGGTCAGGTTCCCTACAAATTTGACCCCAGAACAACGAGCTGGACTTAAACGCACTTTGGGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

339

Amino Acids

36.85

Weight (kDa)

8.36

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 67	2e-28	DnaJ domain
DnaJ_C	PF01556	163 - 321	2.4e-37	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25530 AT5G25530
fragaria_vesca	FvH4_2g30150
malus_domestica	MD02G1290100.v1.1 MD07G1036900.v1.1 MD08G1136700.v1.1
prunus_persica	Prupe.1G466900_v2.0.a1 Prupe.1G466900_v2.0.a1
pyrus_communis	pycom08g11550
rosa_chinensis	RchiOBHm_Chr6g0312781
rosa_laevigata	RLG00000010300
rosa_multiflora	Rmu_co8483235.1_g000001
rosa_roxburghii	Rroxscaffold_7G00156500
rosa_rugosa	Rorug06G0399600
rosa_samantha	Rh6AG516600 Rh6BG527900 Rh6CG532700 Rh6DG518900
rosa_wichuraiana	Rw6G044870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	839
Acc36I	ACCTGC	1 cut(s)	697
Acc65I	GGTACC	1 cut(s)	638
AccB1I	GGYRCC	2 cut(s)	93, 638
AccB7I	CCANNNNNTGG	3 cut(s)	90, 239, 263
AccI	GTMKAC	2 cut(s)	524, 732
AccIII	TCCGGA	1 cut(s)	655
AciI	CCGC	1 cut(s)	276
AclI	AACGTT	1 cut(s)	462
AclWI	GGATC	2 cut(s)	170, 364
AcoI	YGGCCR	2 cut(s)	81, 679
AcsI	RAATTY	4 cut(s)	137, 326, 944, 967
AcuI	CTGAAG	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	580
AfaI	GTAC	1 cut(s)	640
AfiI	CCNNNNNNNGG	5 cut(s)	90, 239, 245, 263, 662
AgsI	TTSAA	8 cut(s)	28, 142, 223, 295, 381, 534, 614, 937
AjnI	CCWGG	6 cut(s)	238, 622, 676, 865, 887, 916
AluBI	AGCT	7 cut(s)	128, 282, 520, 782, 811, 877, 989
AluI	AGCT	7 cut(s)	128, 282, 520, 782, 811, 877, 989
AlwI	GGATC	2 cut(s)	170, 364
Aor13HI	TCCGGA	1 cut(s)	655
AoxI	GGCC	3 cut(s)	81, 156, 679
ApeKI	GCWGC	2 cut(s)	507, 808
ApoI	RAATTY	4 cut(s)	137, 326, 944, 967
ArsI	GACNNNNNNTTYG	6 cut(s)	686, 718, 758, 790, 936, 968
Asp718I	GGTACC	1 cut(s)	638
AspLEI	GCGC	1 cut(s)	589
AspS9I	GGNCC	1 cut(s)	365
AsuC2I	CCSGG	2 cut(s)	369, 845
AsuHPI	GGTGA	3 cut(s)	43, 859, 941
AvaII	GGWCC	1 cut(s)	365
BalI	TGGCCA	2 cut(s)	83, 681
BanI	GGYRCC	2 cut(s)	93, 638
BbsI	GAAGAC	1 cut(s)	57
BbvCI	CCTCAGC	1 cut(s)	783
BbvI	GCAGC	2 cut(s)	519, 820
BccI	CCATC	3 cut(s)	389, 621, 818
BciT130I	CCWGG	6 cut(s)	240, 624, 678, 867, 889, 918
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	2 cut(s)	369, 845
BfaI	CTAG	3 cut(s)	300, 555, 821
BfmI	CTRYAG	3 cut(s)	45, 690, 801
BfoI	RGCGCY	1 cut(s)	590
BfuAI	ACCTGC	1 cut(s)	697
BglII	AGATCT	1 cut(s)	374
BisI	GCNGC	2 cut(s)	508, 809
BlsI	GCNGC	2 cut(s)	509, 810
Bme1390I	CCNGG	8 cut(s)	240, 369, 624, 678, 845, 867, 889, 918
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	4 cut(s)	95, 367, 640, 959
BmrFI	CCNGG	8 cut(s)	240, 369, 624, 678, 845, 867, 889, 918
BmsI	GCATC	1 cut(s)	559
BpiI	GAAGAC	1 cut(s)	57
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
Bpu10I	CCTNAGC	1 cut(s)	783
BpuEI	CTTGAG	2 cut(s)	190, 533
BpuMI	CCSGG	2 cut(s)	369, 845
Bsa29I	ATCGAT	1 cut(s)	711
BsaBI	GATNNNNATC	1 cut(s)	355
BsaHI	GRCGYC	1 cut(s)	580
BsaJI	CCNNGG	3 cut(s)	865, 888, 917
BsaWI	WCCGGW	1 cut(s)	655
Bsc4I	CCNNNNNNNGG	5 cut(s)	90, 239, 245, 263, 662
Bse1I	ACTGG	2 cut(s)	532, 682
Bse3DI	GCAATG	1 cut(s)	754
Bse8I	GATNNNNATC	1 cut(s)	355
BseAI	TCCGGA	1 cut(s)	655
BseBI	CCWGG	6 cut(s)	240, 624, 678, 867, 889, 918
BseCI	ATCGAT	1 cut(s)	711
BseDI	CCNNGG	3 cut(s)	865, 888, 917
BseGI	GGATG	1 cut(s)	632
BseJI	GATNNNNATC	1 cut(s)	355
BseLI	CCNNNNNNNGG	5 cut(s)	90, 239, 245, 263, 662
BseMI	GCAATG	1 cut(s)	754
BseMII	CTCAG	3 cut(s)	144, 194, 774
BseNI	ACTGG	2 cut(s)	532, 682
BseRI	GAGGAG	2 cut(s)	530, 746
BseXI	GCAGC	2 cut(s)	519, 820
BsgI	GTGCAG	1 cut(s)	827
BshFI	GGCC	3 cut(s)	83, 158, 681
BshNI	GGYRCC	2 cut(s)	93, 638
BshVI	ATCGAT	1 cut(s)	711
BsiSI	CCGG	4 cut(s)	369, 590, 656, 845
BslFI	GGGAC	2 cut(s)	418, 827
BslI	CCNNNNNNNGG	5 cut(s)	90, 239, 245, 263, 662
BsmFI	GGGAC	2 cut(s)	418, 827
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	3 cut(s)	83, 158, 681
Bsp13I	TCCGGA	1 cut(s)	655
Bsp143I	GATC	9 cut(s)	55, 175, 199, 356, 374, 446, 645, 708, 939
BspACI	CCGC	1 cut(s)	276
BspANI	GGCC	3 cut(s)	83, 158, 681
BspCNI	CTCAG	3 cut(s)	145, 193, 775
BspDI	ATCGAT	1 cut(s)	711
BspEI	TCCGGA	1 cut(s)	655
BspHI	TCATGA	1 cut(s)	724
BspLI	GGNNCC	4 cut(s)	95, 367, 640, 959
BspMAI	CTGCAG	1 cut(s)	694
BspMI	ACCTGC	1 cut(s)	697
BspPI	GGATC	2 cut(s)	170, 364
BspT107I	GGYRCC	2 cut(s)	93, 638
BsrDI	GCAATG	1 cut(s)	754
BsrI	ACTGG	2 cut(s)	532, 682
BssECI	CCNNGG	3 cut(s)	865, 888, 917
BssMI	GATC	9 cut(s)	55, 175, 199, 356, 374, 446, 645, 708, 939
BssNAI	GTATAC	2 cut(s)	525, 733
BssNI	GRCGYC	1 cut(s)	580
Bst1107I	GTATAC	2 cut(s)	525, 733
Bst2UI	CCWGG	6 cut(s)	240, 624, 678, 867, 889, 918
Bst4CI	ACNGT	2 cut(s)	562, 805
Bst6I	CTCTTC	1 cut(s)	179
BstACI	GRCGYC	1 cut(s)	580
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	3 cut(s)	153, 180, 783
BstF5I	GGATG	1 cut(s)	632
BstH2I	RGCGCY	1 cut(s)	590
BstHHI	GCGC	1 cut(s)	589
BstKTI	GATC	9 cut(s)	58, 178, 202, 359, 377, 449, 648, 711, 942
BstMBI	GATC	9 cut(s)	55, 175, 199, 356, 374, 446, 645, 708, 939
BstMWI	GCNNNNNNNGC	3 cut(s)	586, 817, 826
BstNI	CCWGG	6 cut(s)	240, 624, 678, 867, 889, 918
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	8 cut(s)	238, 367, 622, 676, 843, 865, 887, 916
BstSFI	CTRYAG	3 cut(s)	45, 690, 801
BstV1I	GCAGC	2 cut(s)	519, 820
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
BstZ17I	GTATAC	2 cut(s)	525, 733
Bsu15I	ATCGAT	1 cut(s)	711
BsuRI	GGCC	3 cut(s)	83, 158, 681
BsuTUI	ATCGAT	1 cut(s)	711
BtsCI	GGATG	1 cut(s)	632
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	2 cut(s)	277, 810
BveI	ACCTGC	1 cut(s)	697
Cac8I	GCNNGC	1 cut(s)	81
CciI	TCATGA	1 cut(s)	724
CfoI	GCGC	1 cut(s)	589
Cfr13I	GGNCC	1 cut(s)	365
ClaI	ATCGAT	1 cut(s)	711
CseI	GACGC	1 cut(s)	569
Csp6I	GTAC	1 cut(s)	639
CviAII	CATG	5 cut(s)	85, 206, 229, 504, 725
CviQI	GTAC	1 cut(s)	639
DdeI	CTNAG	3 cut(s)	153, 180, 783
DpnI	GATC	9 cut(s)	57, 177, 201, 358, 376, 448, 647, 710, 941
DpnII	GATC	9 cut(s)	55, 175, 199, 356, 374, 446, 645, 708, 939
DrdI	GACNNNNNNGTC	1 cut(s)	839
DseDI	GACNNNNNNGTC	1 cut(s)	839
EaeI	YGGCCR	2 cut(s)	81, 679
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco147I	AGGCCT	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	365
EcoRI	GAATTC	1 cut(s)	326
EcoRII	CCWGG	6 cut(s)	238, 622, 676, 865, 887, 916
FaeI	CATG	5 cut(s)	88, 209, 232, 507, 728
FalI	AAGNNNNNCTT	2 cut(s)	328, 360
FaqI	GGGAC	2 cut(s)	418, 827
FatI	CATG	5 cut(s)	84, 205, 228, 503, 724
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	2 cut(s)	524, 732
Fnu4HI	GCNGC	2 cut(s)	508, 809
FokI	GGATG	1 cut(s)	639
Fsp4HI	GCNGC	2 cut(s)	508, 809
FspBI	CTAG	3 cut(s)	300, 555, 821
GlaI	GCGC	1 cut(s)	588
GluI	GCNGC	2 cut(s)	508, 809
HaeII	RGCGCY	1 cut(s)	590
HaeIII	GGCC	3 cut(s)	83, 158, 681
HapII	CCGG	4 cut(s)	369, 590, 656, 845
HgaI	GACGC	1 cut(s)	569
HhaI	GCGC	1 cut(s)	589
Hin1I	GRCGYC	1 cut(s)	580
Hin1II	CATG	5 cut(s)	88, 209, 232, 507, 728
Hin6I	GCGC	1 cut(s)	587
HinP1I	GCGC	1 cut(s)	587
HinfI	GANTC	4 cut(s)	106, 252, 291, 384
HpaII	CCGG	4 cut(s)	369, 590, 656, 845
HphI	GGTGA	3 cut(s)	43, 859, 941
Hpy166II	GTNNAC	2 cut(s)	525, 733
Hpy188I	TCNGA	3 cut(s)	154, 183, 394
Hpy188III	TCNNGA	6 cut(s)	169, 363, 381, 555, 656, 725
Hpy8I	GTNNAC	2 cut(s)	525, 733
HpyAV	CCTTC	3 cut(s)	22, 69, 209
HpyCH4III	ACNGT	2 cut(s)	562, 805
HpyCH4IV	ACGT	2 cut(s)	407, 462
HpyCH4V	TGCA	6 cut(s)	308, 323, 507, 572, 692, 808
HpyF10VI	GCNNNNNNNGC	3 cut(s)	586, 817, 826
HpyF3I	CTNAG	3 cut(s)	153, 180, 783
HpySE526I	ACGT	2 cut(s)	407, 462
Hsp92I	GRCGYC	1 cut(s)	580
Hsp92II	CATG	5 cut(s)	88, 209, 232, 507, 728
HspAI	GCGC	1 cut(s)	587
Kpn2I	TCCGGA	1 cut(s)	655
KpnI	GGTACC	1 cut(s)	642
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	9 cut(s)	55, 175, 199, 356, 374, 446, 645, 708, 939
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	2 cut(s)	519, 820
LweI	GCATC	1 cut(s)	559
MaeI	CTAG	3 cut(s)	300, 555, 821
MaeII	ACGT	2 cut(s)	407, 462
MaeIII	GTNAC	4 cut(s)	463, 684, 830, 847
MalI	GATC	9 cut(s)	57, 177, 201, 358, 376, 448, 647, 710, 941
MboI	GATC	9 cut(s)	55, 175, 199, 356, 374, 446, 645, 708, 939
MboII	GAAGA	5 cut(s)	62, 196, 369, 643, 949
MflI	RGATCY	1 cut(s)	374
MlsI	TGGCCA	2 cut(s)	83, 681
MluCI	AATT	4 cut(s)	137, 326, 944, 967
MluNI	TGGCCA	2 cut(s)	83, 681
Mox20I	TGGCCA	2 cut(s)	83, 681
MroI	TCCGGA	1 cut(s)	655
MscI	TGGCCA	2 cut(s)	83, 681
MseI	TTAA	2 cut(s)	605, 996
MslI	CAYNNNNRTG	1 cut(s)	614
Msp20I	TGGCCA	2 cut(s)	83, 681
MspI	CCGG	4 cut(s)	369, 590, 656, 845
MspR9I	CCNGG	8 cut(s)	240, 369, 624, 678, 845, 867, 889, 918
Mva1269I	GAATGC	1 cut(s)	46
MvaI	CCWGG	6 cut(s)	240, 624, 678, 867, 889, 918
MwoI	GCNNNNNNNGC	3 cut(s)	586, 817, 826
NciI	CCSGG	2 cut(s)	369, 845
NdeII	GATC	9 cut(s)	55, 175, 199, 356, 374, 446, 645, 708, 939
NlaIII	CATG	5 cut(s)	88, 209, 232, 507, 728
NlaIV	GGNNCC	4 cut(s)	95, 367, 640, 959
NmuCI	GTSAC	2 cut(s)	830, 847
NspI	RCATGY	1 cut(s)	232
PagI	TCATGA	1 cut(s)	724
PceI	AGGCCT	1 cut(s)	158
PctI	GAATGC	1 cut(s)	46
PfeI	GAWTC	4 cut(s)	106, 252, 291, 384
PflMI	CCANNNNNTGG	3 cut(s)	90, 239, 263
PkrI	GCNGC	2 cut(s)	509, 810
PpuMI	RGGWCCY	1 cut(s)	365
Psp1406I	AACGTT	1 cut(s)	462
Psp5II	RGGWCCY	1 cut(s)	365
Psp6I	CCWGG	6 cut(s)	238, 622, 676, 865, 887, 916
PspGI	CCWGG	6 cut(s)	238, 622, 676, 865, 887, 916
PspN4I	GGNNCC	4 cut(s)	95, 367, 640, 959
PspPI	GGNCC	1 cut(s)	365
PspPPI	RGGWCCY	1 cut(s)	365
PstI	CTGCAG	1 cut(s)	694
PsuI	RGATCY	1 cut(s)	374
RsaI	GTAC	1 cut(s)	640
RsaNI	GTAC	1 cut(s)	639
RseI	CAYNNNNRTG	1 cut(s)	614
SaqAI	TTAA	2 cut(s)	605, 996
SatI	GCNGC	2 cut(s)	508, 809
Sau3AI	GATC	9 cut(s)	55, 175, 199, 356, 374, 446, 645, 708, 939
Sau96I	GGNCC	1 cut(s)	365
ScrFI	CCNGG	8 cut(s)	240, 369, 624, 678, 845, 867, 889, 918
SfaNI	GCATC	1 cut(s)	559
SfcI	CTRYAG	3 cut(s)	45, 690, 801
SinI	GGWCC	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	2 cut(s)	169, 512
SmoI	CTYRAG	2 cut(s)	169, 512
Sse9I	AATT	4 cut(s)	137, 326, 944, 967
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	1 cut(s)	276
SspMI	CTAG	3 cut(s)	300, 555, 821
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	8 cut(s)	238, 367, 622, 676, 843, 865, 887, 916
TaaI	ACNGT	2 cut(s)	562, 805
TaiI	ACGT	2 cut(s)	410, 465
TaqI	TCGA	2 cut(s)	445, 711
TasI	AATT	4 cut(s)	137, 326, 944, 967
TfiI	GAWTC	4 cut(s)	106, 252, 291, 384
Tru1I	TTAA	2 cut(s)	605, 996
Tru9I	TTAA	2 cut(s)	605, 996
TscAI	CASTG	2 cut(s)	277, 810
TseFI	GTSAC	2 cut(s)	830, 847
TseI	GCWGC	2 cut(s)	507, 808
Tsp45I	GTSAC	2 cut(s)	830, 847
TspDTI	ATGAA	2 cut(s)	101, 560
TspRI	CASTG	2 cut(s)	277, 810
Van91I	CCANNNNNTGG	3 cut(s)	90, 239, 263
VpaK11BI	GGWCC	1 cut(s)	365
XapI	RAATTY	4 cut(s)	137, 326, 944, 967
XbaI	TCTAGA	1 cut(s)	554
XceI	RCATGY	1 cut(s)	232
XmiI	GTMKAC	2 cut(s)	524, 732
XspI	CTAG	3 cut(s)	300, 555, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.