Prupe.1G466900_v2.0.a1

DnaJ homolog subfamily B member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011650
Physical Location & Seq
Forward (+)
38915995 .. 38918586
2592 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G466900.1

Sequence Viewer

Length: 1005 bp
ATGGGGGTGGATTATTATAACGTATTGAAGGTAAACAGAAATGCTACAGAGGATGATCTAAAGAAGGCTTATAGGAGGCTGGCCATGAAATGGCACCCTGATAAGAATCCTAATAACAAGAAAGAAGCAGAAGCCAAATTCAAGCAGATCTCCGAGGCATATGAGGTCTTGAGCGATTCTCAGAAAAGAGCAATTTACGATCAGTATGGCGAAGAAGGACTGAAAGATATGCCGCCTCCAGAAAGATATGCAAATGGAAATGGAGGTGGATCAAAAGGATTTAATCCTAGGAATGCAGAGGATATATTTGCAGAATTCTTTGGAAGTAGTCCTTTCGGATTTGGGTCAACAGGACCTGGGAGGTCTATGAGATTCCAATCTGATGGAGGAGGGGGAATGTTTGGCGGATTTGGAGGAAACGAAAATATTTTCCGATCATATAGTGAGGGTGTTACACCAAAGAAACCAACAGCAGTGGAGAGCAAATTGCCTTGCAGCCTTGAGGAGCTGTATACTGGATCAACAAGGAAAATGAAGATCTCAAGAACTGTGGTTGATGCAAATGGACGTCAAGTGCCAGAACAAGAGATATTGACCATTGATGTGAAGCCAGGATGGAAGAAGGGAACCAAGATTACATTTCCAGATAAAGGTAATGAGCAGCTTGGCCAGCTGCCAGCAGACCTTGTTTTTGTGATTGATGAGAAGCCCCATGACACATACAAGAGAGACGGCAATGACCTCGTTGTGAACCACAAAGTGACATTAGCGGAGGCATTGGGTGGAACCACGGTGCATCTCACTACGCTCGATGGTCGTGATCTATCCATCCCGGTGACTGACATTGTGAGCCCGGGCTACGAACTTCTTGTTGCCAGGGAGGGCATGCCAATACCAAAAGAGCCTCGTAACCGGGGTGATTTGAAGATCAAATTTGAGGTGAGGTTCCCTACAAGATTAACCCCAGAGCAAAGAGCCGGACTTAAACGAACTTTGGCCGGTTGA

Protein Analysis

335

Amino Acids

36.99

Weight (kDa)

8.84

Isoelectric Point (pI)

39.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011650)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25530 AT5G25530
fragaria_vesca FvH4_2g30150
malus_domestica MD02G1290100.v1.1 MD07G1036900.v1.1 MD08G1136700.v1.1
prunus_persica Prupe.1G466900_v2.0.a1 Prupe.1G466900_v2.0.a1
pyrus_communis pycom08g11550
rosa_chinensis RchiOBHm_Chr6g0312781
rosa_laevigata RLG00000010300
rosa_multiflora Rmu_co8483235.1_g000001
rosa_roxburghii Rroxscaffold_7G00156500
rosa_rugosa Rorug06G0399600
rosa_samantha Rh6AG516600 Rh6BG527900 Rh6CG532700 Rh6DG518900
rosa_wichuraiana Rw6G044870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 18
AatII GACGTC 1 cut(s) 571
AccB1I GGYRCC 1 cut(s) 93
AccB7I CCANNNNNTGG 1 cut(s) 90
AccI GTMKAC 1 cut(s) 512
AciI CCGC 3 cut(s) 233, 405, 770
AclWI GGATC 2 cut(s) 277, 526
AcoI YGGCCR 3 cut(s) 81, 667, 996
AcsI RAATTY 3 cut(s) 137, 314, 932
AcyI GRCGYC 1 cut(s) 568
AdeI CACNNNGTG 1 cut(s) 760
AfiI CCNNNNNNNGG 2 cut(s) 90, 650
AgsI TTSAA 3 cut(s) 28, 142, 925
AjnI CCWGG 3 cut(s) 355, 610, 875
AluBI AGCT 3 cut(s) 508, 664, 673
AluI AGCT 3 cut(s) 508, 664, 673
Alw26I GTCTC 1 cut(s) 723
AlwI GGATC 2 cut(s) 277, 526
AlwNI CAGNNNCTG 1 cut(s) 356
Ama87I CYCGRG 1 cut(s) 853
AoxI GGCC 3 cut(s) 81, 667, 996
ApeKI GCWGC 3 cut(s) 495, 661, 673
ApoI RAATTY 3 cut(s) 137, 314, 932
ArsI GACNNNNNNTTYG 2 cut(s) 674, 706
AspA2I CCTAGG 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 353
AsuC2I CCSGG 4 cut(s) 833, 854, 855, 914
AsuHPI GGTGA 3 cut(s) 847, 929, 952
AvaI CYCGRG 1 cut(s) 853
AvaII GGWCC 1 cut(s) 353
AvrII CCTAGG 1 cut(s) 287
BalI TGGCCA 2 cut(s) 83, 669
BanI GGYRCC 1 cut(s) 93
BanII GRGCYC 1 cut(s) 854
BbvI GCAGC 3 cut(s) 507, 660, 673
BccI CCATC 4 cut(s) 377, 609, 806, 836
BceAI ACGGC 1 cut(s) 748
BcgI CGANNNNNNTGC 2 cut(s) 724, 758
BciT130I CCWGG 3 cut(s) 357, 612, 877
BcnI CCSGG 4 cut(s) 833, 854, 855, 914
BcoDI GTCTC 1 cut(s) 723
BfaI CTAG 1 cut(s) 288
BfmI CTRYAG 1 cut(s) 45
BglII AGATCT 2 cut(s) 147, 537
BisI GCNGC 4 cut(s) 233, 496, 662, 674
BlnI CCTAGG 1 cut(s) 287
BlsI GCNGC 4 cut(s) 234, 497, 663, 675
Bme1390I CCNGG 7 cut(s) 357, 612, 833, 854, 855, 877, 914
Bme18I GGWCC 1 cut(s) 353
BmeT110I CYCGRG 1 cut(s) 853
BmgT120I GGNCC 1 cut(s) 353
BmiI GGNNCC 4 cut(s) 95, 628, 787, 947
BmrFI CCNGG 7 cut(s) 357, 612, 833, 854, 855, 877, 914
BmsI GCATC 2 cut(s) 547, 805
BplI GAGNNNNNCTC 2 cut(s) 163, 195
BpmI CTGGAG 1 cut(s) 222
BpuEI CTTGAG 3 cut(s) 190, 521, 526
BpuMI CCSGG 4 cut(s) 833, 854, 855, 914
BsaBI GATNNNNATC 2 cut(s) 105, 376
BsaHI GRCGYC 1 cut(s) 568
BsaJI CCNNGG 7 cut(s) 153, 287, 356, 789, 853, 876, 913
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 650
Bse118I RCCGGY 1 cut(s) 998
Bse1I ACTGG 1 cut(s) 520
Bse3DI GCAATG 1 cut(s) 742
Bse8I GATNNNNATC 2 cut(s) 105, 376
BseBI CCWGG 3 cut(s) 357, 612, 877
BseDI CCNNGG 7 cut(s) 153, 287, 356, 789, 853, 876, 913
BseGI GGATG 3 cut(s) 58, 620, 828
BseJI GATNNNNATC 2 cut(s) 105, 376
BseLI CCNNNNNNNGG 2 cut(s) 90, 650
BseMI GCAATG 1 cut(s) 742
BseMII CTCAG 1 cut(s) 194
BseNI ACTGG 1 cut(s) 520
BseRI GAGGAG 2 cut(s) 402, 518
BseXI GCAGC 3 cut(s) 507, 660, 673
BshFI GGCC 3 cut(s) 83, 669, 998
BshNI GGYRCC 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 853
BsiSI CCGG 5 cut(s) 833, 854, 913, 978, 999
BslI CCNNNNNNNGG 2 cut(s) 90, 650
BsmAI GTCTC 1 cut(s) 723
BsmBI CGTCTC 1 cut(s) 723
BsmI GAATGC 1 cut(s) 298
BsnI GGCC 3 cut(s) 83, 669, 998
BsoBI CYCGRG 1 cut(s) 853
Bsp1286I GDGCHC 1 cut(s) 854
Bsp143I GATC 9 cut(s) 55, 147, 199, 269, 434, 518, 537, 820, 927
BspACI CCGC 3 cut(s) 233, 405, 770
BspANI GGCC 3 cut(s) 83, 669, 998
BspCNI CTCAG 1 cut(s) 193
BspLI GGNNCC 4 cut(s) 95, 628, 787, 947
BspPI GGATC 2 cut(s) 277, 526
BspT107I GGYRCC 1 cut(s) 93
BsrDI GCAATG 1 cut(s) 742
BsrFI RCCGGY 1 cut(s) 998
BsrI ACTGG 1 cut(s) 520
BssAI RCCGGY 1 cut(s) 998
BssECI CCNNGG 7 cut(s) 153, 287, 356, 789, 853, 876, 913
BssMI GATC 9 cut(s) 55, 147, 199, 269, 434, 518, 537, 820, 927
BssNAI GTATAC 1 cut(s) 513
BssNI GRCGYC 1 cut(s) 568
BssT1I CCWWGG 1 cut(s) 287
Bst1107I GTATAC 1 cut(s) 513
Bst2UI CCWGG 3 cut(s) 357, 612, 877
Bst4CI ACNGT 2 cut(s) 550, 793
BstACI GRCGYC 1 cut(s) 568
BstC8I GCNNGC 4 cut(s) 81, 671, 678, 887
BstDEI CTNAG 1 cut(s) 180
BstDSI CCRYGG 1 cut(s) 789
BstF5I GGATG 3 cut(s) 58, 620, 828
BstKTI GATC 9 cut(s) 58, 150, 202, 272, 437, 521, 540, 823, 930
BstMAI GTCTC 1 cut(s) 723
BstMBI GATC 9 cut(s) 55, 147, 199, 269, 434, 518, 537, 820, 927
BstMWI GCNNNNNNNGC 1 cut(s) 670
BstNI CCWGG 3 cut(s) 357, 612, 877
BstNSI RCATGY 1 cut(s) 889
BstSCI CCNGG 7 cut(s) 355, 610, 831, 852, 853, 875, 912
BstSFI CTRYAG 1 cut(s) 45
BstV1I GCAGC 3 cut(s) 507, 660, 673
BstX2I RGATCY 2 cut(s) 147, 537
BstXI CCANNNNNNTGG 1 cut(s) 383
BstYI RGATCY 2 cut(s) 147, 537
BstZ17I GTATAC 1 cut(s) 513
BsuRI GGCC 3 cut(s) 83, 669, 998
BtgI CCRYGG 1 cut(s) 789
BtsCI GGATG 3 cut(s) 58, 620, 828
BtsI GCAGTG 1 cut(s) 480
BtsIMutI CAGTG 1 cut(s) 480
Cac8I GCNNGC 4 cut(s) 81, 671, 678, 887
CaiI CAGNNNCTG 1 cut(s) 356
Cfr10I RCCGGY 1 cut(s) 998
Cfr13I GGNCC 1 cut(s) 353
Cfr9I CCCGGG 1 cut(s) 853
CspCI CAANNNNNGTGG 4 cut(s) 456, 491, 531, 566
CviAII CATG 3 cut(s) 85, 713, 886
DdeI CTNAG 1 cut(s) 180
DpnI GATC 9 cut(s) 57, 149, 201, 271, 436, 520, 539, 822, 929
DpnII GATC 9 cut(s) 55, 147, 199, 269, 434, 518, 537, 820, 927
DraIII CACNNNGTG 1 cut(s) 760
EaeI YGGCCR 3 cut(s) 81, 667, 996
EciI GGCGGA 1 cut(s) 420
Eco130I CCWWGG 1 cut(s) 287
Eco24I GRGCYC 1 cut(s) 854
Eco47I GGWCC 1 cut(s) 353
Eco88I CYCGRG 1 cut(s) 853
EcoO109I RGGNCCY 1 cut(s) 353
EcoRI GAATTC 1 cut(s) 314
EcoRII CCWGG 3 cut(s) 355, 610, 875
EcoT14I CCWWGG 1 cut(s) 287
EcoT38I GRGCYC 1 cut(s) 854
ErhI CCWWGG 1 cut(s) 287
Esp3I CGTCTC 1 cut(s) 723
FaeI CATG 3 cut(s) 88, 716, 889
FalI AAGNNNNNCTT 2 cut(s) 316, 348
FatI CATG 3 cut(s) 84, 712, 885
FauNDI CATATG 1 cut(s) 160
FblI GTMKAC 1 cut(s) 512
Fnu4HI GCNGC 4 cut(s) 233, 496, 662, 674
FokI GGATG 3 cut(s) 65, 627, 815
FriOI GRGCYC 1 cut(s) 854
Fsp4HI GCNGC 4 cut(s) 233, 496, 662, 674
FspBI CTAG 1 cut(s) 288
GluI GCNGC 4 cut(s) 233, 496, 662, 674
GsuI CTGGAG 1 cut(s) 222
HaeIII GGCC 3 cut(s) 83, 669, 998
HapII CCGG 5 cut(s) 833, 854, 913, 978, 999
Hin1I GRCGYC 1 cut(s) 568
Hin1II CATG 3 cut(s) 88, 716, 889
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HinfI GANTC 3 cut(s) 106, 176, 372
HpaII CCGG 5 cut(s) 833, 854, 913, 978, 999
HphI GGTGA 3 cut(s) 847, 929, 952
Hpy166II GTNNAC 4 cut(s) 34, 348, 513, 751
Hpy188I TCNGA 5 cut(s) 154, 183, 338, 382, 434
Hpy188III TCNNGA 5 cut(s) 169, 239, 543, 644, 818
Hpy8I GTNNAC 4 cut(s) 34, 348, 513, 751
HpyAV CCTTC 4 cut(s) 22, 58, 209, 616
HpyCH4III ACNGT 2 cut(s) 550, 793
HpyCH4IV ACGT 2 cut(s) 21, 568
HpyCH4V TGCA 6 cut(s) 251, 296, 311, 495, 560, 796
HpyF10VI GCNNNNNNNGC 1 cut(s) 670
HpyF3I CTNAG 1 cut(s) 180
HpySE526I ACGT 2 cut(s) 21, 568
Hsp92I GRCGYC 1 cut(s) 568
Hsp92II CATG 3 cut(s) 88, 716, 889
Kzo9I GATC 9 cut(s) 55, 147, 199, 269, 434, 518, 537, 820, 927
LmnI GCTCC 1 cut(s) 505
Lsp1109I GCAGC 3 cut(s) 507, 660, 673
LweI GCATC 2 cut(s) 547, 805
MaeI CTAG 1 cut(s) 288
MaeII ACGT 2 cut(s) 21, 568
MaeIII GTNAC 4 cut(s) 451, 760, 835, 908
MalI GATC 9 cut(s) 57, 149, 201, 271, 436, 520, 539, 822, 929
MboI GATC 9 cut(s) 55, 147, 199, 269, 434, 518, 537, 820, 927
MboII GAAGA 4 cut(s) 224, 547, 631, 937
MflI RGATCY 2 cut(s) 147, 537
MhlI GDGCHC 1 cut(s) 854
MlsI TGGCCA 2 cut(s) 83, 669
MluCI AATT 5 cut(s) 137, 192, 314, 485, 932
MluNI TGGCCA 2 cut(s) 83, 669
Mox20I TGGCCA 2 cut(s) 83, 669
MscI TGGCCA 2 cut(s) 83, 669
MseI TTAA 3 cut(s) 282, 959, 984
MslI CAYNNNNRTG 2 cut(s) 602, 833
Msp20I TGGCCA 2 cut(s) 83, 669
MspA1I CMGCKG 1 cut(s) 673
MspI CCGG 5 cut(s) 833, 854, 913, 978, 999
MspR9I CCNGG 7 cut(s) 357, 612, 833, 854, 855, 877, 914
Mva1269I GAATGC 1 cut(s) 298
MvaI CCWGG 3 cut(s) 357, 612, 877
MwoI GCNNNNNNNGC 1 cut(s) 670
NciI CCSGG 4 cut(s) 833, 854, 855, 914
NdeI CATATG 1 cut(s) 160
NdeII GATC 9 cut(s) 55, 147, 199, 269, 434, 518, 537, 820, 927
NlaIII CATG 3 cut(s) 88, 716, 889
NlaIV GGNNCC 4 cut(s) 95, 628, 787, 947
NmuCI GTSAC 2 cut(s) 760, 835
NspI RCATGY 1 cut(s) 889
PaeI GCATGC 1 cut(s) 889
PctI GAATGC 1 cut(s) 298
PfeI GAWTC 3 cut(s) 106, 176, 372
PflMI CCANNNNNTGG 1 cut(s) 90
PkrI GCNGC 4 cut(s) 234, 497, 663, 675
PpuMI RGGWCCY 1 cut(s) 353
PsiI TTATAA 1 cut(s) 18
Psp5II RGGWCCY 1 cut(s) 353
Psp6I CCWGG 3 cut(s) 355, 610, 875
PspGI CCWGG 3 cut(s) 355, 610, 875
PspN4I GGNNCC 4 cut(s) 95, 628, 787, 947
PspPI GGNCC 1 cut(s) 353
PspPPI RGGWCCY 1 cut(s) 353
PsrI GAACNNNNNNTAC 2 cut(s) 619, 651
PstNI CAGNNNCTG 1 cut(s) 356
PsuI RGATCY 2 cut(s) 147, 537
PvuII CAGCTG 1 cut(s) 673
RseI CAYNNNNRTG 2 cut(s) 602, 833
SaqAI TTAA 3 cut(s) 282, 959, 984
SatI GCNGC 4 cut(s) 233, 496, 662, 674
Sau3AI GATC 9 cut(s) 55, 147, 199, 269, 434, 518, 537, 820, 927
Sau96I GGNCC 1 cut(s) 353
ScrFI CCNGG 7 cut(s) 357, 612, 833, 854, 855, 877, 914
SduI GDGCHC 1 cut(s) 854
SfaNI GCATC 2 cut(s) 547, 805
SfcI CTRYAG 1 cut(s) 45
SinI GGWCC 1 cut(s) 353
SmaI CCCGGG 1 cut(s) 855
SmiMI CAYNNNNRTG 2 cut(s) 602, 833
SmlI CTYRAG 3 cut(s) 169, 500, 541
SmoI CTYRAG 3 cut(s) 169, 500, 541
SphI GCATGC 1 cut(s) 889
SrfI GCCCGGGC 1 cut(s) 855
Sse9I AATT 5 cut(s) 137, 192, 314, 485, 932
SsiI CCGC 3 cut(s) 233, 405, 770
SspI AATATT 1 cut(s) 427
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 7 cut(s) 355, 610, 831, 852, 853, 875, 912
StyI CCWWGG 1 cut(s) 287
TaaI ACNGT 2 cut(s) 550, 793
TaiI ACGT 2 cut(s) 24, 571
TaqI TCGA 1 cut(s) 810
TasI AATT 5 cut(s) 137, 192, 314, 485, 932
TauI GCSGC 1 cut(s) 235
TfiI GAWTC 3 cut(s) 106, 176, 372
Tru1I TTAA 3 cut(s) 282, 959, 984
Tru9I TTAA 3 cut(s) 282, 959, 984
TscAI CASTG 1 cut(s) 480
TseFI GTSAC 2 cut(s) 760, 835
TseI GCWGC 3 cut(s) 495, 661, 673
Tsp45I GTSAC 2 cut(s) 760, 835
TspDTI ATGAA 2 cut(s) 101, 548
TspMI CCCGGG 1 cut(s) 853
TspRI CASTG 1 cut(s) 480
Van91I CCANNNNNTGG 1 cut(s) 90
VpaK11BI GGWCC 1 cut(s) 353
XapI RAATTY 3 cut(s) 137, 314, 932
XceI RCATGY 1 cut(s) 889
XmaI CCCGGG 1 cut(s) 853
XmaJI CCTAGG 1 cut(s) 287
XmiI GTMKAC 1 cut(s) 512
XspI CTAG 1 cut(s) 288
ZraI GACGTC 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.