Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0011650

Physical Location & Seq

Genomic Coordinates Reverse (-)

34603396 .. 34605468

Gene Structure 2073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1290100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGGGTGGATTATTACAGTGTATTGAAGGTGAACAAGAATGCTACAGAAGATGATATAAAGAAGGCGTATAGGAAGCTGGCCATGAAATGGCACCCGGACAAGAACCCTAATGACAAAAAAGAAGCAGAAGCCAGATTCAAGCAGATCTCTGAGGCTTATGAGGTGTTGAGTGATCCTCAGAAAAGACAAGTTTATGATCAGGATGGTGAAGAAGGTTTGAAAGATATCCCACCACCTGGAAGTGGTGGATTCTCATATGGAGGTGGATCCAAGGGATTTAATCCTAGGAACGCGGAGGACATTTTTGCAGAATTCTTCGGAAGTAGTCCTTTCGGATTTGGATCATCAGGACCTGGGAAATCCATGAGGTTTTCATCCGATGGAGGGGGGACGTTCGGGGCATTTGGTGGCGGTGGTGAAAATATTTTTCGATCATATAGTGAAGGTGTCACGCCAAAGAAACCACAAGCAGTTGAGAGCAAATTGCCATGCAGCCTTGAGGAGCTGTATTCTGGATCAACGAGGAAGATGAAGATATCAAGGAGTGTGATTGATGCAAATGGACGCCAAGTGACGGAACAAGAAATATTGACGATTGATGTGAAGCCAGGATGGAAGAAGGGAACCAAGATTACATTCCCAGATAAAGGAAACGAGCAGCTAGGTCACCTGCCGGCAGACCTTGTCTTTGTGATCGATGAGAAACCACACAGCACTTACAAGAGAGATGGCAATGACCTCATTGTGAACAAAAAGGTGACATTGGCCGACGCATTGGGCGGAACCACGGTGAACTTAACCACGCTTGATGGTCGTGATTTATCAATTCCGGTGACTGACATTGTGAACCCGGGCTACGAGCTTGTCGTTGCCAGGGAAGGTATGCCAATAGCAAAGGAGCGTGGGAATAGGGGTGATTTGAAGATCATATTTGAGATCAGGTTCCCTACAAGACTGACCCCAGACCAAAGAGCTGGACTTAAACGAACATTGGCAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

335

Amino Acids

36.52

Weight (kDa)

8.64

Isoelectric Point (pI)

33.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 67	2.4e-29	DnaJ domain
DnaJ_C	PF01556	159 - 317	1.1e-38	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25530 AT5G25530
fragaria_vesca	FvH4_2g30150
malus_domestica	MD02G1290100.v1.1 MD07G1036900.v1.1 MD08G1136700.v1.1
prunus_persica	Prupe.1G466900_v2.0.a1 Prupe.1G466900_v2.0.a1
pyrus_communis	pycom08g11550
rosa_chinensis	RchiOBHm_Chr6g0312781
rosa_laevigata	RLG00000010300
rosa_multiflora	Rmu_co8483235.1_g000001
rosa_roxburghii	Rroxscaffold_7G00156500
rosa_rugosa	Rorug06G0399600
rosa_samantha	Rh6AG516600 Rh6BG527900 Rh6CG532700 Rh6DG518900
rosa_wichuraiana	Rw6G044870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	681
Acc36I	ACCTGC	2 cut(s)	681, 989
AccB1I	GGYRCC	1 cut(s)	93
AccB7I	CCANNNNNTGG	2 cut(s)	90, 239
AccII	CGCG	1 cut(s)	296
AciI	CCGC	3 cut(s)	296, 414, 783
AclWI	GGATC	5 cut(s)	170, 264, 277, 352, 526
AcoI	YGGCCR	2 cut(s)	81, 768
AcsI	RAATTY	1 cut(s)	314
AcyI	GRCGYC	1 cut(s)	568
AfiI	CCNNNNNNNGG	6 cut(s)	90, 239, 245, 387, 577, 650
AgsI	TTSAA	4 cut(s)	28, 142, 223, 925
AjnI	CCWGG	4 cut(s)	238, 355, 610, 875
AjuI	GAANNNNNNNTTGG	2 cut(s)	623, 655
AluBI	AGCT	5 cut(s)	79, 508, 664, 865, 977
AluI	AGCT	5 cut(s)	79, 508, 664, 865, 977
AlwI	GGATC	5 cut(s)	170, 264, 277, 352, 526
AlwNI	CAGNNNCTG	1 cut(s)	356
Ama87I	CYCGRG	1 cut(s)	853
AoxI	GGCC	2 cut(s)	81, 768
ApeKI	GCWGC	2 cut(s)	495, 661
ApoI	RAATTY	1 cut(s)	314
ArsI	GACNNNNNNTTYG	2 cut(s)	674, 706
AspA2I	CCTAGG	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	353
AsuC2I	CCSGG	3 cut(s)	98, 854, 855
AsuHPI	GGTGA	8 cut(s)	43, 221, 431, 662, 772, 805, 847, 929
AvaI	CYCGRG	1 cut(s)	853
AvaII	GGWCC	1 cut(s)	353
AvrII	CCTAGG	1 cut(s)	287
BalI	TGGCCA	1 cut(s)	83
BamHI	GGATCC	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	507, 673
BccI	CCATC	5 cut(s)	200, 377, 609, 725, 806
BciT130I	CCWGG	4 cut(s)	240, 357, 612, 877
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	3 cut(s)	98, 854, 855
BfaI	CTAG	2 cut(s)	288, 665
BfmI	CTRYAG	1 cut(s)	45
BfuAI	ACCTGC	2 cut(s)	681, 989
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	2 cut(s)	496, 662
BlnI	CCTAGG	1 cut(s)	287
BlsI	GCNGC	2 cut(s)	497, 663
Bme1390I	CCNGG	7 cut(s)	98, 240, 357, 612, 854, 855, 877
Bme18I	GGWCC	1 cut(s)	353
BmeT110I	CYCGRG	1 cut(s)	853
BmgT120I	GGNCC	1 cut(s)	353
BmiI	GGNNCC	5 cut(s)	95, 271, 628, 787, 947
BmrFI	CCNGG	7 cut(s)	98, 240, 357, 612, 854, 855, 877
BmsI	GCATC	1 cut(s)	547
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
BpuEI	CTTGAG	1 cut(s)	521
BpuMI	CCSGG	3 cut(s)	98, 854, 855
Bsa29I	ATCGAT	1 cut(s)	699
BsaBI	GATNNNNATC	1 cut(s)	343
BsaHI	GRCGYC	1 cut(s)	568
BsaJI	CCNNGG	6 cut(s)	273, 287, 356, 789, 853, 876
BsaWI	WCCGGW	1 cut(s)	832
Bsc4I	CCNNNNNNNGG	6 cut(s)	90, 239, 245, 387, 577, 650
Bse118I	RCCGGY	1 cut(s)	676
Bse3DI	GCAATG	1 cut(s)	742
Bse8I	GATNNNNATC	1 cut(s)	343
BseBI	CCWGG	4 cut(s)	240, 357, 612, 877
BseCI	ATCGAT	1 cut(s)	699
BseDI	CCNNGG	6 cut(s)	273, 287, 356, 789, 853, 876
BseGI	GGATG	3 cut(s)	211, 377, 620
BseJI	GATNNNNATC	1 cut(s)	343
BseLI	CCNNNNNNNGG	6 cut(s)	90, 239, 245, 387, 577, 650
BseMI	GCAATG	1 cut(s)	742
BseMII	CTCAG	2 cut(s)	144, 194
BseRI	GAGGAG	1 cut(s)	518
BseXI	GCAGC	2 cut(s)	507, 673
Bsh1236I	CGCG	1 cut(s)	296
BshFI	GGCC	2 cut(s)	83, 770
BshNI	GGYRCC	1 cut(s)	93
BshVI	ATCGAT	1 cut(s)	699
BsiHKCI	CYCGRG	1 cut(s)	853
BsiSI	CCGG	4 cut(s)	98, 677, 833, 854
BslFI	GGGAC	1 cut(s)	406
BslI	CCNNNNNNNGG	6 cut(s)	90, 239, 245, 387, 577, 650
BsmFI	GGGAC	1 cut(s)	406
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	2 cut(s)	83, 770
BsoBI	CYCGRG	1 cut(s)	853
BspACI	CCGC	3 cut(s)	296, 414, 783
BspANI	GGCC	2 cut(s)	83, 770
BspCNI	CTCAG	2 cut(s)	145, 193
BspDI	ATCGAT	1 cut(s)	699
BspFNI	CGCG	1 cut(s)	296
BspLI	GGNNCC	5 cut(s)	95, 271, 628, 787, 947
BspMI	ACCTGC	2 cut(s)	681, 989
BspPI	GGATC	5 cut(s)	170, 264, 277, 352, 526
BspT107I	GGYRCC	1 cut(s)	93
BsrDI	GCAATG	1 cut(s)	742
BsrFI	RCCGGY	1 cut(s)	676
BssAI	RCCGGY	1 cut(s)	676
BssECI	CCNNGG	6 cut(s)	273, 287, 356, 789, 853, 876
BssNI	GRCGYC	1 cut(s)	568
BssT1I	CCWWGG	2 cut(s)	273, 287
Bst2UI	CCWGG	4 cut(s)	240, 357, 612, 877
Bst4CI	ACNGT	2 cut(s)	20, 793
BstACI	GRCGYC	1 cut(s)	568
BstC8I	GCNNGC	2 cut(s)	81, 678
BstDEI	CTNAG	2 cut(s)	153, 180
BstDSI	CCRYGG	1 cut(s)	789
BstEII	GGTNACC	1 cut(s)	668
BstF5I	GGATG	3 cut(s)	211, 377, 620
BstFNI	CGCG	1 cut(s)	296
BstNI	CCWGG	4 cut(s)	240, 357, 612, 877
BstPI	GGTNACC	1 cut(s)	668
BstSCI	CCNGG	7 cut(s)	96, 238, 355, 610, 852, 853, 875
BstSFI	CTRYAG	1 cut(s)	45
BstUI	CGCG	1 cut(s)	296
BstV1I	GCAGC	2 cut(s)	507, 673
BstX2I	RGATCY	2 cut(s)	147, 269
BstXI	CCANNNNNNTGG	1 cut(s)	977
BstYI	RGATCY	2 cut(s)	147, 269
Bsu15I	ATCGAT	1 cut(s)	699
BsuRI	GGCC	2 cut(s)	83, 770
BsuTUI	ATCGAT	1 cut(s)	699
BtgI	CCRYGG	1 cut(s)	789
BtsCI	GGATG	3 cut(s)	211, 377, 620
BtsIMutI	CAGTG	1 cut(s)	25
BveI	ACCTGC	2 cut(s)	681, 989
Cac8I	GCNNGC	2 cut(s)	81, 678
CaiI	CAGNNNCTG	1 cut(s)	356
Cfr10I	RCCGGY	1 cut(s)	676
Cfr13I	GGNCC	1 cut(s)	353
Cfr9I	CCCGGG	1 cut(s)	853
ClaI	ATCGAT	1 cut(s)	699
CseI	GACGC	2 cut(s)	576, 782
CviAII	CATG	3 cut(s)	85, 367, 492
DdeI	CTNAG	2 cut(s)	153, 180
EaeI	YGGCCR	2 cut(s)	81, 768
EciI	GGCGGA	1 cut(s)	798
Eco130I	CCWWGG	2 cut(s)	273, 287
Eco32I	GATATC	2 cut(s)	229, 540
Eco47I	GGWCC	1 cut(s)	353
Eco88I	CYCGRG	1 cut(s)	853
Eco91I	GGTNACC	1 cut(s)	668
EcoO109I	RGGNCCY	1 cut(s)	353
EcoO65I	GGTNACC	1 cut(s)	668
EcoRI	GAATTC	1 cut(s)	314
EcoRII	CCWGG	4 cut(s)	238, 355, 610, 875
EcoRV	GATATC	2 cut(s)	229, 540
EcoT14I	CCWWGG	2 cut(s)	273, 287
ErhI	CCWWGG	2 cut(s)	273, 287
FaeI	CATG	3 cut(s)	88, 370, 495
FalI	AAGNNNNNCTT	2 cut(s)	316, 348
FaqI	GGGAC	1 cut(s)	406
FatI	CATG	3 cut(s)	84, 366, 491
FauNDI	CATATG	1 cut(s)	259
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	2 cut(s)	496, 662
FokI	GGATG	3 cut(s)	218, 364, 627
Fsp4HI	GCNGC	2 cut(s)	496, 662
FspBI	CTAG	2 cut(s)	288, 665
GluI	GCNGC	2 cut(s)	496, 662
HaeIII	GGCC	2 cut(s)	83, 770
HapII	CCGG	4 cut(s)	98, 677, 833, 854
HgaI	GACGC	2 cut(s)	576, 782
Hin1I	GRCGYC	1 cut(s)	568
Hin1II	CATG	3 cut(s)	88, 370, 495
HinfI	GANTC	2 cut(s)	138, 252
HpaII	CCGG	4 cut(s)	98, 677, 833, 854
HphI	GGTGA	8 cut(s)	43, 221, 431, 662, 772, 805, 847, 929
Hpy166II	GTNNAC	4 cut(s)	34, 751, 796, 850
Hpy188I	TCNGA	5 cut(s)	154, 183, 323, 338, 382
Hpy188III	TCNNGA	4 cut(s)	203, 351, 516, 818
Hpy8I	GTNNAC	4 cut(s)	34, 751, 796, 850
Hpy99I	CGWCG	1 cut(s)	776
HpyAV	CCTTC	6 cut(s)	22, 58, 209, 440, 616, 875
HpyCH4III	ACNGT	2 cut(s)	20, 793
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	3 cut(s)	311, 495, 560
HpyF3I	CTNAG	2 cut(s)	153, 180
HpySE526I	ACGT	1 cut(s)	395
Hsp92I	GRCGYC	1 cut(s)	568
Hsp92II	CATG	3 cut(s)	88, 370, 495
KroI	GCCGGC	1 cut(s)	676
KroNI	GCCGGC	1 cut(s)	678
Ksp22I	TGATCA	1 cut(s)	199
LmnI	GCTCC	2 cut(s)	505, 901
Lsp1109I	GCAGC	2 cut(s)	507, 673
LweI	GCATC	1 cut(s)	547
MaeI	CTAG	2 cut(s)	288, 665
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	5 cut(s)	451, 574, 668, 760, 835
MboII	GAAGA	7 cut(s)	62, 224, 310, 541, 547, 631, 937
MflI	RGATCY	2 cut(s)	147, 269
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	3 cut(s)	314, 485, 828
MluNI	TGGCCA	1 cut(s)	83
Mox20I	TGGCCA	1 cut(s)	83
MroNI	GCCGGC	1 cut(s)	676
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	3 cut(s)	282, 800, 984
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	4 cut(s)	98, 677, 833, 854
MspR9I	CCNGG	7 cut(s)	98, 240, 357, 612, 854, 855, 877
Mva1269I	GAATGC	1 cut(s)	46
MvaI	CCWGG	4 cut(s)	240, 357, 612, 877
MvnI	CGCG	1 cut(s)	296
NaeI	GCCGGC	1 cut(s)	678
NciI	CCSGG	3 cut(s)	98, 854, 855
NdeI	CATATG	1 cut(s)	259
NgoMIV	GCCGGC	1 cut(s)	676
NlaIII	CATG	3 cut(s)	88, 370, 495
NlaIV	GGNNCC	5 cut(s)	95, 271, 628, 787, 947
NmuCI	GTSAC	5 cut(s)	451, 574, 668, 760, 835
PaqCI	CACCTGC	1 cut(s)	681
PcsI	WCGNNNNNNNCGW	1 cut(s)	867
PctI	GAATGC	1 cut(s)	46
PdiI	GCCGGC	1 cut(s)	678
PfeI	GAWTC	2 cut(s)	138, 252
PflFI	GACNNNGTC	1 cut(s)	686
PflMI	CCANNNNNTGG	2 cut(s)	90, 239
PkrI	GCNGC	2 cut(s)	497, 663
PpuMI	RGGWCCY	1 cut(s)	353
Psp5II	RGGWCCY	1 cut(s)	353
Psp6I	CCWGG	4 cut(s)	238, 355, 610, 875
PspEI	GGTNACC	1 cut(s)	668
PspGI	CCWGG	4 cut(s)	238, 355, 610, 875
PspN4I	GGNNCC	5 cut(s)	95, 271, 628, 787, 947
PspPI	GGNCC	1 cut(s)	353
PspPPI	RGGWCCY	1 cut(s)	353
PsrI	GAACNNNNNNTAC	4 cut(s)	619, 651, 842, 874
PstNI	CAGNNNCTG	1 cut(s)	356
PsuI	RGATCY	2 cut(s)	147, 269
PsyI	GACNNNGTC	1 cut(s)	686
SaqAI	TTAA	3 cut(s)	282, 800, 984
SatI	GCNGC	2 cut(s)	496, 662
Sau96I	GGNCC	1 cut(s)	353
ScrFI	CCNGG	7 cut(s)	98, 240, 357, 612, 854, 855, 877
SfaNI	GCATC	1 cut(s)	547
SfcI	CTRYAG	1 cut(s)	45
SinI	GGWCC	1 cut(s)	353
SmaI	CCCGGG	1 cut(s)	855
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	3 cut(s)	314, 485, 828
SsiI	CCGC	3 cut(s)	296, 414, 783
SspI	AATATT	2 cut(s)	427, 591
SspMI	CTAG	2 cut(s)	288, 665
StyD4I	CCNGG	7 cut(s)	96, 238, 355, 610, 852, 853, 875
StyI	CCWWGG	2 cut(s)	273, 287
TaaI	ACNGT	2 cut(s)	20, 793
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	2 cut(s)	433, 699
TasI	AATT	3 cut(s)	314, 485, 828
TfiI	GAWTC	2 cut(s)	138, 252
Tru1I	TTAA	3 cut(s)	282, 800, 984
Tru9I	TTAA	3 cut(s)	282, 800, 984
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	5 cut(s)	451, 574, 668, 760, 835
TseI	GCWGC	2 cut(s)	495, 661
Tsp45I	GTSAC	5 cut(s)	451, 574, 668, 760, 835
TspDTI	ATGAA	3 cut(s)	101, 366, 548
TspGWI	ACGGA	1 cut(s)	593
TspMI	CCCGGG	1 cut(s)	853
TspRI	CASTG	1 cut(s)	25
Tth111I	GACNNNGTC	1 cut(s)	686
Van91I	CCANNNNNTGG	2 cut(s)	90, 239
VpaK11BI	GGWCC	1 cut(s)	353
XapI	RAATTY	1 cut(s)	314
XmaI	CCCGGG	1 cut(s)	853
XmaJI	CCTAGG	1 cut(s)	287
XspI	CTAG	2 cut(s)	288, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.