Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011650

Physical Location & Seq

Genomic Coordinates Forward (+)

3037627 .. 3039889

Gene Structure 2263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1036900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGGGGTGGATTATTACAGCGTATTGAAGGTGAACAAGAACGCAACAGAAGATGATTTGAAGAAGGCGTATAGGAAGCTGGCCATGAAATGGCACCCTGACAAGAACCCTAATGATAAAAATGAAGCAGAAACCAGATTCAAGCAGATCTCTGAGGCTTATGAGGTCTTGAGTGATCCTCAGAAAAGACAAGTTTATGATCAAGATGGTGAAGAAGGTTTGAAAGATATGCCACCACCTGGAAGTGGTGGATTCTCATATGGAGGTGGATCCAATGGATTTAATCCTAGGAACGCGGAGGACATTTTCGCAGAATTCTTCGGAAGTAGTCCCTTCGGATTTGGGTCATCGGGACCTGGAAAATCCAAGAGGTTCTCATCCGATGGAGGGGGGACGTTCGGAGGATTTGGTGGAGGTGAAAATATTTTTCGGTCATATAGTGAAGGTGTCACACCAAAGAAACCACAAGCAGTTGAGAGCAAATTGCCCTGCAGCCTTGAGGAGCTGTATTCTGGATCAACAAGGAAGATGAAGATCTCAAGGAGTGTGGTTGATGCTAATGGGCGCCAAGTGCCGGAGCAAGAAATATTGACGATTGATGTGAAGCCAGGATGGAAGAAAGGAACCAAGATTACATTCCCAGATAAAGGAAATGAGCAGCTAGGTCACCTGCCAGCTGACCTTGTGTTTGTGATTGATGAGAAACCACACAACACTTACAAGAGAGATGGCAATGACCTCATTGTGAACAAAAAGGTGACACTGGCCGAGGCATTAGGTGGAACCACGGTGCACCTCACCACGCTTGATGGTCGCGATTTATCAATTCCGGTTACTAACATTGTGAACCCGGGCTACGAGCTCGTCGTTGCCAGGGAGGGTATGCCAATAGCTAAAGAGCCTGGCAATAGGGGTGATTTGAAGATCATATTTGAGATCAGGTTTCCTACAAGACTGACCCCAGAGCAAAGAGCTGGACTTAAACGAGCTTTGGCAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

334

Amino Acids

36.48

Weight (kDa)

8.35

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 67	1.1e-28	DnaJ domain
DnaJ_C	PF01556	158 - 316	1.5e-38	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25530 AT5G25530
fragaria_vesca	FvH4_2g30150
malus_domestica	MD02G1290100.v1.1 MD07G1036900.v1.1 MD08G1136700.v1.1
prunus_persica	Prupe.1G466900_v2.0.a1 Prupe.1G466900_v2.0.a1
pyrus_communis	pycom08g11550
rosa_chinensis	RchiOBHm_Chr6g0312781
rosa_laevigata	RLG00000010300
rosa_multiflora	Rmu_co8483235.1_g000001
rosa_roxburghii	Rroxscaffold_7G00156500
rosa_rugosa	Rorug06G0399600
rosa_samantha	Rh6AG516600 Rh6BG527900 Rh6CG532700 Rh6DG518900
rosa_wichuraiana	Rw6G044870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	678
Acc36I	ACCTGC	1 cut(s)	678
AccB1I	GGYRCC	2 cut(s)	93, 564
AccB7I	CCANNNNNTGG	2 cut(s)	90, 239
AccII	CGCG	2 cut(s)	296, 816
AciI	CCGC	1 cut(s)	296
AclWI	GGATC	4 cut(s)	170, 264, 277, 523
AcoI	YGGCCR	2 cut(s)	81, 765
AcsI	RAATTY	1 cut(s)	314
AcyI	GRCGYC	1 cut(s)	565
AfiI	CCNNNNNNNGG	6 cut(s)	90, 239, 245, 387, 574, 647
AgsI	TTSAA	5 cut(s)	28, 61, 142, 223, 922
AjnI	CCWGG	5 cut(s)	238, 355, 607, 872, 901
AjuI	GAANNNNNNNTTGG	2 cut(s)	620, 652
AluBI	AGCT	8 cut(s)	79, 505, 661, 677, 862, 893, 974, 989
AluI	AGCT	8 cut(s)	79, 505, 661, 677, 862, 893, 974, 989
Alw21I	GWGCWC	2 cut(s)	795, 864
Alw44I	GTGCAC	1 cut(s)	791
AlwI	GGATC	4 cut(s)	170, 264, 277, 523
Ama87I	CYCGRG	1 cut(s)	850
AoxI	GGCC	2 cut(s)	81, 765
ApaLI	GTGCAC	1 cut(s)	791
ApeKI	GCWGC	2 cut(s)	492, 658
ApoI	RAATTY	1 cut(s)	314
ArsI	GACNNNNNNTTYG	2 cut(s)	671, 703
AspA2I	CCTAGG	1 cut(s)	287
AspLEI	GCGC	1 cut(s)	567
AspS9I	GGNCC	1 cut(s)	353
AsuC2I	CCSGG	2 cut(s)	851, 852
AsuHPI	GGTGA	7 cut(s)	43, 221, 428, 659, 769, 790, 926
AvaI	CYCGRG	1 cut(s)	850
AvaII	GGWCC	1 cut(s)	353
AvrII	CCTAGG	1 cut(s)	287
BaeGI	GKGCMC	1 cut(s)	795
BalI	TGGCCA	1 cut(s)	83
BamHI	GGATCC	1 cut(s)	269
BanI	GGYRCC	2 cut(s)	93, 564
BanII	GRGCYC	1 cut(s)	864
Bbv12I	GWGCWC	2 cut(s)	795, 864
BbvI	GCAGC	2 cut(s)	504, 670
BccI	CCATC	5 cut(s)	200, 377, 606, 722, 803
BciT130I	CCWGG	5 cut(s)	240, 357, 609, 874, 903
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	2 cut(s)	851, 852
BfaI	CTAG	2 cut(s)	288, 662
BfmI	CTRYAG	1 cut(s)	490
BfoI	RGCGCY	1 cut(s)	568
BfuAI	ACCTGC	1 cut(s)	678
BglII	AGATCT	2 cut(s)	147, 534
BisI	GCNGC	2 cut(s)	493, 659
BlnI	CCTAGG	1 cut(s)	287
BlsI	GCNGC	2 cut(s)	494, 660
Bme1390I	CCNGG	7 cut(s)	240, 357, 609, 851, 852, 874, 903
Bme18I	GGWCC	1 cut(s)	353
BmeT110I	CYCGRG	1 cut(s)	850
BmgT120I	GGNCC	1 cut(s)	353
BmiI	GGNNCC	6 cut(s)	95, 271, 354, 566, 625, 784
BmrFI	CCNGG	7 cut(s)	240, 357, 609, 851, 852, 874, 903
BmsI	GCATC	1 cut(s)	544
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
BpuEI	CTTGAG	3 cut(s)	190, 518, 523
BpuMI	CCSGG	2 cut(s)	851, 852
BsaBI	GATNNNNATC	1 cut(s)	533
BsaHI	GRCGYC	1 cut(s)	565
BsaJI	CCNNGG	5 cut(s)	287, 768, 786, 850, 873
BsaWI	WCCGGW	1 cut(s)	829
Bsc4I	CCNNNNNNNGG	6 cut(s)	90, 239, 245, 387, 574, 647
Bse1I	ACTGG	1 cut(s)	768
Bse3DI	GCAATG	1 cut(s)	739
Bse8I	GATNNNNATC	1 cut(s)	533
BseBI	CCWGG	5 cut(s)	240, 357, 609, 874, 903
BseDI	CCNNGG	5 cut(s)	287, 768, 786, 850, 873
BseGI	GGATG	2 cut(s)	377, 617
BseJI	GATNNNNATC	1 cut(s)	533
BseLI	CCNNNNNNNGG	6 cut(s)	90, 239, 245, 387, 574, 647
BseMI	GCAATG	1 cut(s)	739
BseMII	CTCAG	2 cut(s)	144, 194
BseNI	ACTGG	1 cut(s)	768
BseRI	GAGGAG	1 cut(s)	515
BseSI	GKGCMC	1 cut(s)	795
BseXI	GCAGC	2 cut(s)	504, 670
Bsh1236I	CGCG	2 cut(s)	296, 816
BshFI	GGCC	2 cut(s)	83, 767
BshNI	GGYRCC	2 cut(s)	93, 564
BsiHKAI	GWGCWC	2 cut(s)	795, 864
BsiHKCI	CYCGRG	1 cut(s)	850
BsiSI	CCGG	3 cut(s)	575, 830, 851
BslFI	GGGAC	3 cut(s)	315, 366, 406
BslI	CCNNNNNNNGG	6 cut(s)	90, 239, 245, 387, 574, 647
BsmFI	GGGAC	3 cut(s)	315, 366, 406
BsnI	GGCC	2 cut(s)	83, 767
BsoBI	CYCGRG	1 cut(s)	850
Bsp1286I	GDGCHC	2 cut(s)	795, 864
Bsp143I	GATC	8 cut(s)	147, 175, 199, 269, 515, 534, 924, 936
Bsp68I	TCGCGA	1 cut(s)	816
BspACI	CCGC	1 cut(s)	296
BspANI	GGCC	2 cut(s)	83, 767
BspCNI	CTCAG	2 cut(s)	145, 193
BspFNI	CGCG	2 cut(s)	296, 816
BspLI	GGNNCC	6 cut(s)	95, 271, 354, 566, 625, 784
BspMAI	CTGCAG	1 cut(s)	494
BspMI	ACCTGC	1 cut(s)	678
BspPI	GGATC	4 cut(s)	170, 264, 277, 523
BspT107I	GGYRCC	2 cut(s)	93, 564
BsrDI	GCAATG	1 cut(s)	739
BsrI	ACTGG	1 cut(s)	768
BssECI	CCNNGG	5 cut(s)	287, 768, 786, 850, 873
BssMI	GATC	8 cut(s)	147, 175, 199, 269, 515, 534, 924, 936
BssNI	GRCGYC	1 cut(s)	565
BssT1I	CCWWGG	1 cut(s)	287
Bst2UI	CCWGG	5 cut(s)	240, 357, 609, 874, 903
Bst4CI	ACNGT	1 cut(s)	790
BstACI	GRCGYC	1 cut(s)	565
BstC8I	GCNNGC	2 cut(s)	81, 675
BstDEI	CTNAG	2 cut(s)	153, 180
BstDSI	CCRYGG	1 cut(s)	786
BstEII	GGTNACC	1 cut(s)	665
BstF5I	GGATG	2 cut(s)	377, 617
BstFNI	CGCG	2 cut(s)	296, 816
BstH2I	RGCGCY	1 cut(s)	568
BstHHI	GCGC	1 cut(s)	567
BstKTI	GATC	8 cut(s)	150, 178, 202, 272, 518, 537, 927, 939
BstMBI	GATC	8 cut(s)	147, 175, 199, 269, 515, 534, 924, 936
BstMWI	GCNNNNNNNGC	1 cut(s)	571
BstNI	CCWGG	5 cut(s)	240, 357, 609, 874, 903
BstPI	GGTNACC	1 cut(s)	665
BstSCI	CCNGG	7 cut(s)	238, 355, 607, 849, 850, 872, 901
BstSFI	CTRYAG	1 cut(s)	490
BstSLI	GKGCMC	1 cut(s)	795
BstUI	CGCG	2 cut(s)	296, 816
BstV1I	GCAGC	2 cut(s)	504, 670
BstX2I	RGATCY	3 cut(s)	147, 269, 534
BstYI	RGATCY	3 cut(s)	147, 269, 534
BsuRI	GGCC	2 cut(s)	83, 767
BtgI	CCRYGG	1 cut(s)	786
BtsCI	GGATG	2 cut(s)	377, 617
BtsIMutI	CAGTG	1 cut(s)	761
BtuMI	TCGCGA	1 cut(s)	816
BveI	ACCTGC	1 cut(s)	678
Cac8I	GCNNGC	2 cut(s)	81, 675
CfoI	GCGC	1 cut(s)	567
Cfr13I	GGNCC	1 cut(s)	353
Cfr9I	CCCGGG	1 cut(s)	850
CspCI	CAANNNNNGTGG	2 cut(s)	528, 563
CviAII	CATG	1 cut(s)	85
DdeI	CTNAG	2 cut(s)	153, 180
DinI	GGCGCC	1 cut(s)	566
DpnI	GATC	8 cut(s)	149, 177, 201, 271, 517, 536, 926, 938
DpnII	GATC	8 cut(s)	147, 175, 199, 269, 515, 534, 924, 936
EaeI	YGGCCR	2 cut(s)	81, 765
Ecl136II	GAGCTC	1 cut(s)	862
Eco130I	CCWWGG	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	864
Eco47I	GGWCC	1 cut(s)	353
Eco53kI	GAGCTC	1 cut(s)	862
Eco88I	CYCGRG	1 cut(s)	850
Eco91I	GGTNACC	1 cut(s)	665
EcoICRI	GAGCTC	1 cut(s)	862
EcoO109I	RGGNCCY	1 cut(s)	353
EcoO65I	GGTNACC	1 cut(s)	665
EcoRI	GAATTC	1 cut(s)	314
EcoRII	CCWGG	5 cut(s)	238, 355, 607, 872, 901
EcoT14I	CCWWGG	1 cut(s)	287
EcoT38I	GRGCYC	1 cut(s)	864
EgeI	GGCGCC	1 cut(s)	566
EheI	GGCGCC	1 cut(s)	566
ErhI	CCWWGG	1 cut(s)	287
FaeI	CATG	1 cut(s)	88
FaqI	GGGAC	3 cut(s)	315, 366, 406
FatI	CATG	1 cut(s)	84
FauNDI	CATATG	1 cut(s)	259
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	2 cut(s)	493, 659
FokI	GGATG	2 cut(s)	364, 624
FriOI	GRGCYC	1 cut(s)	864
Fsp4HI	GCNGC	2 cut(s)	493, 659
FspBI	CTAG	2 cut(s)	288, 662
GlaI	GCGC	1 cut(s)	566
GluI	GCNGC	2 cut(s)	493, 659
HaeII	RGCGCY	1 cut(s)	568
HaeIII	GGCC	2 cut(s)	83, 767
HapII	CCGG	3 cut(s)	575, 830, 851
HhaI	GCGC	1 cut(s)	567
Hin1I	GRCGYC	1 cut(s)	565
Hin1II	CATG	1 cut(s)	88
Hin6I	GCGC	1 cut(s)	565
HinP1I	GCGC	1 cut(s)	565
HinfI	GANTC	2 cut(s)	138, 252
HpaII	CCGG	3 cut(s)	575, 830, 851
HphI	GGTGA	7 cut(s)	43, 221, 428, 659, 769, 790, 926
Hpy166II	GTNNAC	4 cut(s)	34, 748, 793, 847
Hpy188I	TCNGA	7 cut(s)	154, 183, 323, 338, 382, 401, 1001
Hpy188III	TCNNGA	5 cut(s)	169, 203, 351, 513, 815
Hpy8I	GTNNAC	4 cut(s)	34, 748, 793, 847
Hpy99I	CGWCG	1 cut(s)	869
HpyAV	CCTTC	5 cut(s)	22, 58, 209, 343, 437
HpyCH4III	ACNGT	1 cut(s)	790
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	2 cut(s)	492, 793
HpyF10VI	GCNNNNNNNGC	1 cut(s)	571
HpyF3I	CTNAG	2 cut(s)	153, 180
HpySE526I	ACGT	1 cut(s)	395
Hsp92I	GRCGYC	1 cut(s)	565
Hsp92II	CATG	1 cut(s)	88
HspAI	GCGC	1 cut(s)	565
KasI	GGCGCC	1 cut(s)	564
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	8 cut(s)	147, 175, 199, 269, 515, 534, 924, 936
LmnI	GCTCC	2 cut(s)	502, 577
Lsp1109I	GCAGC	2 cut(s)	504, 670
LweI	GCATC	1 cut(s)	544
MaeI	CTAG	2 cut(s)	288, 662
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	4 cut(s)	448, 665, 757, 832
MalI	GATC	8 cut(s)	149, 177, 201, 271, 517, 536, 926, 938
MboI	GATC	8 cut(s)	147, 175, 199, 269, 515, 534, 924, 936
MboII	GAAGA	8 cut(s)	62, 73, 224, 310, 538, 544, 628, 934
MflI	RGATCY	3 cut(s)	147, 269, 534
MhlI	GDGCHC	2 cut(s)	795, 864
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	3 cut(s)	314, 482, 825
MluNI	TGGCCA	1 cut(s)	83
Mly113I	GGCGCC	1 cut(s)	565
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	2 cut(s)	282, 981
Msp20I	TGGCCA	1 cut(s)	83
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	3 cut(s)	575, 830, 851
MspR9I	CCNGG	7 cut(s)	240, 357, 609, 851, 852, 874, 903
MvaI	CCWGG	5 cut(s)	240, 357, 609, 874, 903
MvnI	CGCG	2 cut(s)	296, 816
MwoI	GCNNNNNNNGC	1 cut(s)	571
NarI	GGCGCC	1 cut(s)	565
NciI	CCSGG	2 cut(s)	851, 852
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	8 cut(s)	147, 175, 199, 269, 515, 534, 924, 936
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	6 cut(s)	95, 271, 354, 566, 625, 784
NmeAIII	GCCGAG	1 cut(s)	793
NmuCI	GTSAC	3 cut(s)	448, 665, 757
NruI	TCGCGA	1 cut(s)	816
PaqCI	CACCTGC	1 cut(s)	678
PcsI	WCGNNNNNNNCGW	1 cut(s)	864
PfeI	GAWTC	2 cut(s)	138, 252
PflMI	CCANNNNNTGG	2 cut(s)	90, 239
PkrI	GCNGC	2 cut(s)	494, 660
PluTI	GGCGCC	1 cut(s)	568
PpuMI	RGGWCCY	1 cut(s)	353
Psp124BI	GAGCTC	1 cut(s)	864
Psp5II	RGGWCCY	1 cut(s)	353
Psp6I	CCWGG	5 cut(s)	238, 355, 607, 872, 901
PspEI	GGTNACC	1 cut(s)	665
PspGI	CCWGG	5 cut(s)	238, 355, 607, 872, 901
PspN4I	GGNNCC	6 cut(s)	95, 271, 354, 566, 625, 784
PspPI	GGNCC	1 cut(s)	353
PspPPI	RGGWCCY	1 cut(s)	353
PsrI	GAACNNNNNNTAC	4 cut(s)	616, 648, 839, 871
PstI	CTGCAG	1 cut(s)	494
PsuI	RGATCY	3 cut(s)	147, 269, 534
PvuII	CAGCTG	1 cut(s)	677
RruI	TCGCGA	1 cut(s)	816
SacI	GAGCTC	1 cut(s)	864
SaqAI	TTAA	2 cut(s)	282, 981
SatI	GCNGC	2 cut(s)	493, 659
Sau3AI	GATC	8 cut(s)	147, 175, 199, 269, 515, 534, 924, 936
Sau96I	GGNCC	1 cut(s)	353
ScrFI	CCNGG	7 cut(s)	240, 357, 609, 851, 852, 874, 903
SduI	GDGCHC	2 cut(s)	795, 864
SfaNI	GCATC	1 cut(s)	544
SfcI	CTRYAG	1 cut(s)	490
SfoI	GGCGCC	1 cut(s)	566
SinI	GGWCC	1 cut(s)	353
SmaI	CCCGGG	1 cut(s)	852
SmlI	CTYRAG	3 cut(s)	169, 497, 538
SmoI	CTYRAG	3 cut(s)	169, 497, 538
Sse9I	AATT	3 cut(s)	314, 482, 825
SsiI	CCGC	1 cut(s)	296
SspDI	GGCGCC	1 cut(s)	564
SspI	AATATT	2 cut(s)	424, 588
SspMI	CTAG	2 cut(s)	288, 662
SstI	GAGCTC	1 cut(s)	864
StyD4I	CCNGG	7 cut(s)	238, 355, 607, 849, 850, 872, 901
StyI	CCWWGG	1 cut(s)	287
TaaI	ACNGT	1 cut(s)	790
TaiI	ACGT	1 cut(s)	398
TaqII	GACCGA	1 cut(s)	420
TasI	AATT	3 cut(s)	314, 482, 825
TfiI	GAWTC	2 cut(s)	138, 252
Tru1I	TTAA	2 cut(s)	282, 981
Tru9I	TTAA	2 cut(s)	282, 981
TscAI	CASTG	1 cut(s)	768
TseFI	GTSAC	3 cut(s)	448, 665, 757
TseI	GCWGC	2 cut(s)	492, 658
Tsp45I	GTSAC	3 cut(s)	448, 665, 757
TspDTI	ATGAA	3 cut(s)	101, 138, 545
TspMI	CCCGGG	1 cut(s)	850
TspRI	CASTG	1 cut(s)	768
Van91I	CCANNNNNTGG	2 cut(s)	90, 239
VneI	GTGCAC	1 cut(s)	791
VpaK11BI	GGWCC	1 cut(s)	353
XapI	RAATTY	1 cut(s)	314
XmaI	CCCGGG	1 cut(s)	850
XmaJI	CCTAGG	1 cut(s)	287
XspI	CTAG	2 cut(s)	288, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.