Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0011650

Physical Location & Seq

Genomic Coordinates Forward (+)

9765898 .. 9767654

Gene Structure 1757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g11550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGGGGTGGATTATTATAACGTGTTGAAGGTAAACAGAAATGCTGGAGAGGATGATCTGAAGAAGGGATATAGGAGGCTGGCAATGAAATGGCACCCTGATAAGAACCCTAATAACAAGAAAGAAGCAGAAGCCAAATTCAAGCAGATCTCCGAGGCTTACGAGGTCTTGAGTGATTCTCAAAAGAGAGCGATTTACGATCAGTATGGCGAAGAAGGATTGAAAGACATGCCACCTCCAGGAAGTGGTGGTTCACCGTTTGGAAATGGCGGCGGAGCTGGATCAAAAGGGTTTAATCCTAGGAATGCAGAGGATATCTTCGCCGAATTCTTCGGAAGTAGTCCTTTCGGATTTGGATCATCAGGAGCTGGGAAGTCTATGAGATTCTCGTCTGATGGAAGCGGAGTGTTTGGGGGATTTGGAGGCAACGAAAATACTTTTCGATCATATAGTGAGGGTGTTACTCGAAAGAAACCGCCGGCAGTGGAGAGCAAATTGCCTTGCAGCCTTGAAGAACTGTATGCTGGGTCAACACGGAAAATGAAGATATCAAGAACTGTGGTTGATGCAAATGGACGCCAAGTGCTGGAGCAAGAAATATTGACAATCGAAGTGAAGCCAGGATGGAAGAAGGGAACCAAGATTACGTTTCCTGATAAGGGTAATGAACAGCTTGGCCAGCTGCCGGCAGACCTTGTCTTTGTGATTGATGAGAAGCCCCATGACACTTACAAGAGAGATGGCAATGACCTAATTGTGAACCAAAAGGTGTCGTTAGCGGAGGCGTTGGGTGGAACCACACTACACCTCACCACGCTAGATGGTCGTGATCTATCAATTTCGGTGACTGACATTGTGAGCCCCGGGTACGAGCTAGTTGTTGCCAGGGAGGGTATGCCGATAGCAAAAGGGCCCGCCAACAGGGGTGACTTGAAGATCAAGTTTGAGGTGAAGTTCCCTACAAGATTGACCCCGGAGCAAAGATCTACACTTAAACGAACTTTGACAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

338

Amino Acids

36.75

Weight (kDa)

8.97

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25530 AT5G25530
fragaria_vesca	FvH4_2g30150
malus_domestica	MD02G1290100.v1.1 MD07G1036900.v1.1 MD08G1136700.v1.1
prunus_persica	Prupe.1G466900_v2.0.a1 Prupe.1G466900_v2.0.a1
pyrus_communis	pycom08g11550
rosa_chinensis	RchiOBHm_Chr6g0312781
rosa_laevigata	RLG00000010300
rosa_multiflora	Rmu_co8483235.1_g000001
rosa_roxburghii	Rroxscaffold_7G00156500
rosa_rugosa	Rorug06G0399600
rosa_samantha	Rh6AG516600 Rh6BG527900 Rh6CG532700 Rh6DG518900
rosa_wichuraiana	Rw6G044870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	18
AccB1I	GGYRCC	1 cut(s)	93
AccB7I	CCANNNNNTGG	2 cut(s)	245, 586
AciI	CCGC	6 cut(s)	270, 273, 402, 476, 779, 915
AclWI	GGATC	2 cut(s)	289, 364
AcoI	YGGCCR	1 cut(s)	676
AcsI	RAATTY	2 cut(s)	137, 326
AcuI	CTGAAG	1 cut(s)	80
AcyI	GRCGYC	1 cut(s)	577
AfaI	GTAC	1 cut(s)	869
AfiI	CCNNNNNNNGG	6 cut(s)	239, 245, 586, 659, 685, 921
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	5 cut(s)	28, 142, 223, 512, 934
AjnI	CCWGG	3 cut(s)	238, 619, 884
AluBI	AGCT	5 cut(s)	278, 368, 673, 682, 874
AluI	AGCT	5 cut(s)	278, 368, 673, 682, 874
AlwI	GGATC	2 cut(s)	289, 364
AlwNI	CAGNNNCTG	1 cut(s)	368
Ama87I	CYCGRG	1 cut(s)	863
AoxI	GGCC	2 cut(s)	676, 911
ApaI	GGGCCC	1 cut(s)	915
ApeKI	GCWGC	2 cut(s)	504, 682
ApoI	RAATTY	2 cut(s)	137, 326
ArsI	GACNNNNNNTTYG	2 cut(s)	683, 715
AspA2I	CCTAGG	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	911, 912
AsuC2I	CCSGG	3 cut(s)	864, 865, 974
AsuHPI	GGTGA	5 cut(s)	246, 802, 856, 938, 961
AvaI	CYCGRG	1 cut(s)	863
AvrII	CCTAGG	1 cut(s)	299
BaeGI	GKGCMC	1 cut(s)	915
BalI	TGGCCA	1 cut(s)	678
BanI	GGYRCC	1 cut(s)	93
BanII	GRGCYC	2 cut(s)	863, 915
BbvI	GCAGC	2 cut(s)	516, 669
BccI	CCATC	4 cut(s)	389, 618, 734, 815
BciT130I	CCWGG	3 cut(s)	240, 621, 886
BcnI	CCSGG	3 cut(s)	864, 865, 974
BfaI	CTAG	3 cut(s)	300, 818, 875
BglII	AGATCT	2 cut(s)	147, 983
BisI	GCNGC	3 cut(s)	271, 505, 683
BlnI	CCTAGG	1 cut(s)	299
BlsI	GCNGC	3 cut(s)	272, 506, 684
Bme1390I	CCNGG	6 cut(s)	240, 621, 864, 865, 886, 974
BmeT110I	CYCGRG	1 cut(s)	863
BmgT120I	GGNCC	2 cut(s)	911, 912
BmiI	GGNNCC	4 cut(s)	95, 637, 796, 913
BmrFI	CCNGG	6 cut(s)	240, 621, 864, 865, 886, 974
BmsI	GCATC	1 cut(s)	556
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
BpmI	CTGGAG	3 cut(s)	66, 222, 608
BpuEI	CTTGAG	1 cut(s)	190
BpuMI	CCSGG	3 cut(s)	864, 865, 974
BsaBI	GATNNNNATC	1 cut(s)	355
BsaHI	GRCGYC	1 cut(s)	577
BsaJI	CCNNGG	6 cut(s)	153, 299, 862, 863, 885, 972
Bsc4I	CCNNNNNNNGG	6 cut(s)	239, 245, 586, 659, 685, 921
Bse118I	RCCGGY	2 cut(s)	478, 685
Bse3DI	GCAATG	2 cut(s)	90, 751
Bse8I	GATNNNNATC	1 cut(s)	355
BseBI	CCWGG	3 cut(s)	240, 621, 886
BseDI	CCNNGG	6 cut(s)	153, 299, 862, 863, 885, 972
BseGI	GGATG	2 cut(s)	58, 629
BseJI	GATNNNNATC	1 cut(s)	355
BseLI	CCNNNNNNNGG	6 cut(s)	239, 245, 586, 659, 685, 921
BseMI	GCAATG	2 cut(s)	90, 751
BseSI	GKGCMC	1 cut(s)	915
BseXI	GCAGC	2 cut(s)	516, 669
BseYI	CCCAGC	2 cut(s)	368, 524
BshFI	GGCC	2 cut(s)	678, 913
BshNI	GGYRCC	1 cut(s)	93
BsiHKCI	CYCGRG	1 cut(s)	863
BsiSI	CCGG	4 cut(s)	479, 686, 864, 974
BslI	CCNNNNNNNGG	6 cut(s)	239, 245, 586, 659, 685, 921
BsmI	GAATGC	1 cut(s)	310
BsnI	GGCC	2 cut(s)	678, 913
BsoBI	CYCGRG	1 cut(s)	863
Bsp120I	GGGCCC	1 cut(s)	911
Bsp1286I	GDGCHC	2 cut(s)	863, 915
Bsp143I	GATC	9 cut(s)	55, 147, 199, 281, 356, 443, 829, 936, 983
BspACI	CCGC	6 cut(s)	270, 273, 402, 476, 779, 915
BspANI	GGCC	2 cut(s)	678, 913
BspLI	GGNNCC	4 cut(s)	95, 637, 796, 913
BspPI	GGATC	2 cut(s)	289, 364
BspT107I	GGYRCC	1 cut(s)	93
BsrDI	GCAATG	2 cut(s)	90, 751
BsrFI	RCCGGY	2 cut(s)	478, 685
BssAI	RCCGGY	2 cut(s)	478, 685
BssECI	CCNNGG	6 cut(s)	153, 299, 862, 863, 885, 972
BssMI	GATC	9 cut(s)	55, 147, 199, 281, 356, 443, 829, 936, 983
BssNI	GRCGYC	1 cut(s)	577
BssT1I	CCWWGG	1 cut(s)	299
Bst2UI	CCWGG	3 cut(s)	240, 621, 886
Bst4CI	ACNGT	3 cut(s)	258, 519, 559
BstACI	GRCGYC	1 cut(s)	577
BstC8I	GCNNGC	5 cut(s)	81, 480, 680, 687, 915
BstF5I	GGATG	2 cut(s)	58, 629
BstKTI	GATC	9 cut(s)	58, 150, 202, 284, 359, 446, 832, 939, 986
BstMBI	GATC	9 cut(s)	55, 147, 199, 281, 356, 443, 829, 936, 983
BstMWI	GCNNNNNNNGC	1 cut(s)	679
BstNI	CCWGG	3 cut(s)	240, 621, 886
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	6 cut(s)	238, 619, 862, 863, 884, 972
BstSLI	GKGCMC	1 cut(s)	915
BstV1I	GCAGC	2 cut(s)	516, 669
BstX2I	RGATCY	2 cut(s)	147, 983
BstYI	RGATCY	2 cut(s)	147, 983
BsuRI	GGCC	2 cut(s)	678, 913
BtsCI	GGATG	2 cut(s)	58, 629
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	1 cut(s)	489
Cac8I	GCNNGC	5 cut(s)	81, 480, 680, 687, 915
CaiI	CAGNNNCTG	1 cut(s)	368
Cfr10I	RCCGGY	2 cut(s)	478, 685
Cfr13I	GGNCC	2 cut(s)	911, 912
Cfr9I	CCCGGG	1 cut(s)	863
CseI	GACGC	1 cut(s)	585
Csp6I	GTAC	1 cut(s)	868
CspCI	CAANNNNNGTGG	2 cut(s)	540, 575
CviAII	CATG	2 cut(s)	229, 722
CviQI	GTAC	1 cut(s)	868
DpnI	GATC	9 cut(s)	57, 149, 201, 283, 358, 445, 831, 938, 985
DpnII	GATC	9 cut(s)	55, 147, 199, 281, 356, 443, 829, 936, 983
EaeI	YGGCCR	1 cut(s)	676
EciI	GGCGGA	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	299
Eco24I	GRGCYC	2 cut(s)	863, 915
Eco32I	GATATC	2 cut(s)	316, 549
Eco57I	CTGAAG	1 cut(s)	80
Eco88I	CYCGRG	1 cut(s)	863
EcoO109I	RGGNCCY	1 cut(s)	911
EcoRI	GAATTC	1 cut(s)	326
EcoRII	CCWGG	3 cut(s)	238, 619, 884
EcoRV	GATATC	2 cut(s)	316, 549
EcoT14I	CCWWGG	1 cut(s)	299
EcoT38I	GRGCYC	2 cut(s)	863, 915
ErhI	CCWWGG	1 cut(s)	299
FaeI	CATG	2 cut(s)	232, 725
FalI	AAGNNNNNCTT	2 cut(s)	328, 360
FatI	CATG	2 cut(s)	228, 721
FauI	CCCGC	1 cut(s)	922
Fnu4HI	GCNGC	3 cut(s)	271, 505, 683
FokI	GGATG	2 cut(s)	65, 636
FriOI	GRGCYC	2 cut(s)	863, 915
Fsp4HI	GCNGC	3 cut(s)	271, 505, 683
FspBI	CTAG	3 cut(s)	300, 818, 875
GluI	GCNGC	3 cut(s)	271, 505, 683
GsaI	CCCAGC	2 cut(s)	372, 528
GsuI	CTGGAG	3 cut(s)	66, 222, 608
HaeIII	GGCC	2 cut(s)	678, 913
HapII	CCGG	4 cut(s)	479, 686, 864, 974
HgaI	GACGC	1 cut(s)	585
Hin1I	GRCGYC	1 cut(s)	577
Hin1II	CATG	2 cut(s)	232, 725
HincII	GTYRAC	1 cut(s)	531
HindII	GTYRAC	1 cut(s)	531
HinfI	GANTC	2 cut(s)	176, 384
HpaII	CCGG	4 cut(s)	479, 686, 864, 974
HphI	GGTGA	5 cut(s)	246, 802, 856, 938, 961
Hpy166II	GTNNAC	4 cut(s)	34, 254, 531, 760
Hpy188I	TCNGA	5 cut(s)	60, 154, 335, 350, 394
Hpy188III	TCNNGA	5 cut(s)	169, 363, 552, 653, 827
Hpy8I	GTNNAC	4 cut(s)	34, 254, 531, 760
HpyAV	CCTTC	4 cut(s)	22, 58, 209, 625
HpyCH4III	ACNGT	3 cut(s)	258, 519, 559
HpyCH4IV	ACGT	2 cut(s)	21, 647
HpyCH4V	TGCA	3 cut(s)	308, 504, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	679
HpySE526I	ACGT	2 cut(s)	21, 647
Hsp92I	GRCGYC	1 cut(s)	577
Hsp92II	CATG	2 cut(s)	232, 725
KroI	GCCGGC	2 cut(s)	478, 685
KroNI	GCCGGC	2 cut(s)	480, 687
Kzo9I	GATC	9 cut(s)	55, 147, 199, 281, 356, 443, 829, 936, 983
LmnI	GCTCC	4 cut(s)	275, 365, 589, 976
Lsp1109I	GCAGC	2 cut(s)	516, 669
LweI	GCATC	1 cut(s)	556
MaeI	CTAG	3 cut(s)	300, 818, 875
MaeII	ACGT	2 cut(s)	21, 647
MaeIII	GTNAC	3 cut(s)	460, 844, 926
MalI	GATC	9 cut(s)	57, 149, 201, 283, 358, 445, 831, 938, 985
MboI	GATC	9 cut(s)	55, 147, 199, 281, 356, 443, 829, 936, 983
MboII	GAAGA	8 cut(s)	73, 224, 310, 322, 524, 556, 640, 946
MflI	RGATCY	2 cut(s)	147, 983
MhlI	GDGCHC	2 cut(s)	863, 915
MlsI	TGGCCA	1 cut(s)	678
MluCI	AATT	5 cut(s)	137, 326, 494, 753, 837
MluNI	TGGCCA	1 cut(s)	678
Mox20I	TGGCCA	1 cut(s)	678
MroNI	GCCGGC	2 cut(s)	478, 685
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	2 cut(s)	294, 993
Msp20I	TGGCCA	1 cut(s)	678
MspA1I	CMGCKG	1 cut(s)	682
MspI	CCGG	4 cut(s)	479, 686, 864, 974
MspR9I	CCNGG	6 cut(s)	240, 621, 864, 865, 886, 974
Mva1269I	GAATGC	1 cut(s)	310
MvaI	CCWGG	3 cut(s)	240, 621, 886
MwoI	GCNNNNNNNGC	1 cut(s)	679
NaeI	GCCGGC	2 cut(s)	480, 687
NciI	CCSGG	3 cut(s)	864, 865, 974
NdeII	GATC	9 cut(s)	55, 147, 199, 281, 356, 443, 829, 936, 983
NgoMIV	GCCGGC	2 cut(s)	478, 685
NlaIII	CATG	2 cut(s)	232, 725
NlaIV	GGNNCC	4 cut(s)	95, 637, 796, 913
NmuCI	GTSAC	2 cut(s)	844, 926
NspI	RCATGY	1 cut(s)	232
PctI	GAATGC	1 cut(s)	310
PdiI	GCCGGC	2 cut(s)	480, 687
PfeI	GAWTC	2 cut(s)	176, 384
PflFI	GACNNNGTC	1 cut(s)	695
PflMI	CCANNNNNTGG	2 cut(s)	245, 586
PfoI	TCCNGGA	1 cut(s)	238
PkrI	GCNGC	3 cut(s)	272, 506, 684
PsiI	TTATAA	1 cut(s)	18
Psp6I	CCWGG	3 cut(s)	238, 619, 884
PspFI	CCCAGC	2 cut(s)	368, 524
PspGI	CCWGG	3 cut(s)	238, 619, 884
PspN4I	GGNNCC	4 cut(s)	95, 637, 796, 913
PspOMI	GGGCCC	1 cut(s)	911
PspPI	GGNCC	2 cut(s)	911, 912
PsrI	GAACNNNNNNTAC	2 cut(s)	628, 660
PstNI	CAGNNNCTG	1 cut(s)	368
PsuI	RGATCY	2 cut(s)	147, 983
PsyI	GACNNNGTC	1 cut(s)	695
PvuII	CAGCTG	1 cut(s)	682
RsaI	GTAC	1 cut(s)	869
RsaNI	GTAC	1 cut(s)	868
SaqAI	TTAA	2 cut(s)	294, 993
SatI	GCNGC	3 cut(s)	271, 505, 683
Sau3AI	GATC	9 cut(s)	55, 147, 199, 281, 356, 443, 829, 936, 983
Sau96I	GGNCC	2 cut(s)	911, 912
ScrFI	CCNGG	6 cut(s)	240, 621, 864, 865, 886, 974
SduI	GDGCHC	2 cut(s)	863, 915
SfaNI	GCATC	1 cut(s)	556
SmaI	CCCGGG	1 cut(s)	865
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	5 cut(s)	137, 326, 494, 753, 837
SsiI	CCGC	6 cut(s)	270, 273, 402, 476, 779, 915
SspI	AATATT	1 cut(s)	600
SspMI	CTAG	3 cut(s)	300, 818, 875
StyD4I	CCNGG	6 cut(s)	238, 619, 862, 863, 884, 972
StyI	CCWWGG	1 cut(s)	299
TaaI	ACNGT	3 cut(s)	258, 519, 559
TaiI	ACGT	2 cut(s)	24, 650
TaqI	TCGA	3 cut(s)	442, 466, 609
TasI	AATT	5 cut(s)	137, 326, 494, 753, 837
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	2 cut(s)	176, 384
Tru1I	TTAA	2 cut(s)	294, 993
Tru9I	TTAA	2 cut(s)	294, 993
TscAI	CASTG	1 cut(s)	489
TseFI	GTSAC	2 cut(s)	844, 926
TseI	GCWGC	2 cut(s)	504, 682
Tsp45I	GTSAC	2 cut(s)	844, 926
TspDTI	ATGAA	3 cut(s)	101, 557, 681
TspGWI	ACGGA	1 cut(s)	550
TspMI	CCCGGG	1 cut(s)	863
TspRI	CASTG	1 cut(s)	489
Tth111I	GACNNNGTC	1 cut(s)	695
Van91I	CCANNNNNTGG	2 cut(s)	245, 586
XapI	RAATTY	2 cut(s)	137, 326
XceI	RCATGY	1 cut(s)	232
XmaI	CCCGGG	1 cut(s)	863
XmaJI	CCTAGG	1 cut(s)	299
XspI	CTAG	3 cut(s)	300, 818, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.