Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0011650

Physical Location & Seq

Genomic Coordinates Reverse (-)

343223 .. 344838

Gene Structure 1616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00156500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGTGTGGATTACTATAACATATTGAAGGTGAATAGAAATGCTACAGAAGATGATCTCAAAAAGGCTTATAGAAGGCTGGCCATGAAATGGCACCCTGATAAGAATCCCAATGACAAGAAAGAAGCTGAGGCCAAATTCAAGCAGATCTCTGAGGCCTATGAGGCATGTTATTTTTCCTTCTGTTATAGAATTCATGCTAAGGGGGTATTGGCTAAGCAACAACCAAATGATTGTAATAGGACATCAAATACTTGTATCGATCAGGTCTTGAGTGATCCTCAGAAGAGGCAAATATATGATCAGTATGGAGAGGAAGGATTGAAAGACATGCCACCACCTGGAAGTGAATTCTTTGGAAGTACTCCTTTTGGATTTGGGTCATCAGGCCCTGGTAGTGAGAACGTTACACCAAAGAAACCACCAGCAGTGGAGAGCAAGTTGCCTTGCAGCCTCGAGGAGCTATACACTGGTTCAACAAGGAAAATGAAAATCTCTAGGACTGTGGTTGATGCAAACGGACGTCAAGCGCCGGAAACAGAAATACTAACTATTGATGTGAAGCCAGGATGGAAAAAAGGAACCAAGATCACATTTCCAGATAAAGGCAATGAACAGCCCGGCCAGTTACCTGCAGACCTTGTTTTTGTGATTGATGAGAAGGCCCATGACGTTTACAAGAGAGACAGCAATGACCTCCTCATTACAAAAAAGGTGTCATTAGCTGAGGCATTGGGTGGAACTGCAGTGCATCTCAAAACGCTAGATGGGCGCGACCTATCAATCCCGGTGACTGAAATTGTAAGCCCTGGCTATGAGCTTGTCGTTGCTAGGGAGGGTATGCCAATAGCAAAAGAGCCTGGAAATAGGGGTGATTTGAAGATCAAATTCGAGGTCAGGGTTCCCTACAACATTAACCCCGGAACAACGAGCTGGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

313

Amino Acids

34.85

Weight (kDa)

8.11

Isoelectric Point (pI)

37.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 55	1.5e-21	DnaJ domain
DnaJ_C	PF01556	144 - 302	6.7e-38	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25530 AT5G25530
fragaria_vesca	FvH4_2g30150
malus_domestica	MD02G1290100.v1.1 MD07G1036900.v1.1 MD08G1136700.v1.1
prunus_persica	Prupe.1G466900_v2.0.a1 Prupe.1G466900_v2.0.a1
pyrus_communis	pycom08g11550
rosa_chinensis	RchiOBHm_Chr6g0312781
rosa_laevigata	RLG00000010300
rosa_multiflora	Rmu_co8483235.1_g000001
rosa_roxburghii	Rroxscaffold_7G00156500
rosa_rugosa	Rorug06G0399600
rosa_samantha	Rh6AG516600 Rh6BG527900 Rh6CG532700 Rh6DG518900
rosa_wichuraiana	Rw6G044870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	526
AbsI	CCTCGAGG	1 cut(s)	455
Acc36I	ACCTGC	1 cut(s)	640
AccB1I	GGYRCC	1 cut(s)	93
AccB7I	CCANNNNNTGG	2 cut(s)	90, 341
AccII	CGCG	1 cut(s)	774
AclI	AACGTT	1 cut(s)	405
AclWI	GGATC	1 cut(s)	272
AcoI	YGGCCR	2 cut(s)	81, 622
AcsI	RAATTY	4 cut(s)	137, 192, 350, 887
AcyI	GRCGYC	1 cut(s)	523
AfaI	GTAC	1 cut(s)	364
AfiI	CCNNNNNNNGG	3 cut(s)	90, 341, 605
AgsI	TTSAA	5 cut(s)	28, 142, 325, 477, 880
AjnI	CCWGG	5 cut(s)	340, 391, 565, 808, 859
AluBI	AGCT	5 cut(s)	128, 463, 725, 820, 933
AluI	AGCT	5 cut(s)	128, 463, 725, 820, 933
Alw26I	GTCTC	1 cut(s)	678
AlwI	GGATC	1 cut(s)	272
AlwNI	CAGNNNCTG	1 cut(s)	392
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	6 cut(s)	81, 132, 156, 388, 622, 663
ApeKI	GCWGC	1 cut(s)	450
ApoI	RAATTY	4 cut(s)	137, 192, 350, 887
ArsI	GACNNNNNNTTYG	6 cut(s)	629, 661, 701, 733, 879, 911
AspLEI	GCGC	2 cut(s)	532, 774
AspS9I	GGNCC	2 cut(s)	389, 664
AsuC2I	CCSGG	3 cut(s)	621, 788, 921
AsuHPI	GGTGA	3 cut(s)	43, 802, 884
AvaI	CYCGRG	1 cut(s)	455
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	93
BbvCI	CCTCAGC	2 cut(s)	129, 726
BbvI	GCAGC	1 cut(s)	462
BccI	CCATC	2 cut(s)	564, 761
BciT130I	CCWGG	5 cut(s)	342, 393, 567, 810, 861
BclI	TGATCA	1 cut(s)	301
BcnI	CCSGG	3 cut(s)	621, 788, 921
BcoDI	GTCTC	1 cut(s)	678
BfaI	CTAG	3 cut(s)	498, 764, 831
BfmI	CTRYAG	3 cut(s)	45, 633, 744
BfoI	RGCGCY	1 cut(s)	533
BfuAI	ACCTGC	1 cut(s)	640
BglI	GCCNNNNNGGC	1 cut(s)	164
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	1 cut(s)	451
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	452
BmcAI	AGTACT	1 cut(s)	364
Bme1390I	CCNGG	8 cut(s)	342, 393, 567, 621, 788, 810, 861, 921
BmeT110I	CYCGRG	1 cut(s)	455
BmgT120I	GGNCC	2 cut(s)	389, 664
BmiI	GGNNCC	3 cut(s)	95, 583, 903
BmrFI	CCNGG	8 cut(s)	342, 393, 567, 621, 788, 810, 861, 921
BmsI	GCATC	2 cut(s)	502, 760
BplI	GAGNNNNNCTC	2 cut(s)	265, 297
Bpu10I	CCTNAGC	3 cut(s)	129, 201, 726
Bpu1102I	GCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	292
BpuMI	CCSGG	3 cut(s)	621, 788, 921
Bsa29I	ATCGAT	1 cut(s)	261
BsaBI	GATNNNNATC	1 cut(s)	105
BsaHI	GRCGYC	1 cut(s)	523
BsaJI	CCNNGG	3 cut(s)	391, 808, 919
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 341, 605
Bse1I	ACTGG	2 cut(s)	475, 625
Bse3DI	GCAATG	2 cut(s)	616, 697
Bse8I	GATNNNNATC	1 cut(s)	105
BseBI	CCWGG	5 cut(s)	342, 393, 567, 810, 861
BseCI	ATCGAT	1 cut(s)	261
BseDI	CCNNGG	3 cut(s)	391, 808, 919
BseGI	GGATG	1 cut(s)	575
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	3 cut(s)	90, 341, 605
BseMI	GCAATG	2 cut(s)	616, 697
BseMII	CTCAG	4 cut(s)	120, 144, 296, 717
BseNI	ACTGG	2 cut(s)	475, 625
BseRI	GAGGAG	2 cut(s)	473, 689
BseXI	GCAGC	1 cut(s)	462
Bsh1236I	CGCG	1 cut(s)	774
BshFI	GGCC	6 cut(s)	83, 134, 158, 390, 624, 665
BshNI	GGYRCC	1 cut(s)	93
BshVI	ATCGAT	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	455
BsiSI	CCGG	4 cut(s)	533, 621, 788, 921
BslI	CCNNNNNNNGG	3 cut(s)	90, 341, 605
BsmAI	GTCTC	1 cut(s)	678
BsnI	GGCC	6 cut(s)	83, 134, 158, 390, 624, 665
BsoBI	CYCGRG	1 cut(s)	455
Bsp143I	GATC	7 cut(s)	55, 147, 262, 277, 301, 588, 882
Bsp1720I	GCTNAGC	1 cut(s)	216
BspANI	GGCC	6 cut(s)	83, 134, 158, 390, 624, 665
BspCNI	CTCAG	4 cut(s)	121, 145, 295, 718
BspDI	ATCGAT	1 cut(s)	261
BspFNI	CGCG	1 cut(s)	774
BspLI	GGNNCC	3 cut(s)	95, 583, 903
BspMAI	CTGCAG	2 cut(s)	637, 748
BspMI	ACCTGC	1 cut(s)	640
BspPI	GGATC	1 cut(s)	272
BspT107I	GGYRCC	1 cut(s)	93
BsrDI	GCAATG	2 cut(s)	616, 697
BsrI	ACTGG	2 cut(s)	475, 625
BssECI	CCNNGG	3 cut(s)	391, 808, 919
BssMI	GATC	7 cut(s)	55, 147, 262, 277, 301, 588, 882
BssNI	GRCGYC	1 cut(s)	523
Bst2UI	CCWGG	5 cut(s)	342, 393, 567, 810, 861
Bst4CI	ACNGT	1 cut(s)	505
Bst6I	CTCTTC	1 cut(s)	281
BstACI	GRCGYC	1 cut(s)	523
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	6 cut(s)	129, 153, 201, 216, 282, 726
BstF5I	GGATG	1 cut(s)	575
BstFNI	CGCG	1 cut(s)	774
BstH2I	RGCGCY	1 cut(s)	533
BstHHI	GCGC	2 cut(s)	532, 774
BstKTI	GATC	7 cut(s)	58, 150, 265, 280, 304, 591, 885
BstMAI	GTCTC	1 cut(s)	678
BstMBI	GATC	7 cut(s)	55, 147, 262, 277, 301, 588, 882
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 769
BstNI	CCWGG	5 cut(s)	342, 393, 567, 810, 861
BstNSI	RCATGY	2 cut(s)	171, 334
BstSCI	CCNGG	8 cut(s)	340, 391, 565, 619, 786, 808, 859, 919
BstSFI	CTRYAG	3 cut(s)	45, 633, 744
BstUI	CGCG	1 cut(s)	774
BstV1I	GCAGC	1 cut(s)	462
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
Bsu15I	ATCGAT	1 cut(s)	261
BsuRI	GGCC	6 cut(s)	83, 134, 158, 390, 624, 665
BsuTUI	ATCGAT	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	575
BtsI	GCAGTG	2 cut(s)	435, 753
BtsIMutI	CAGTG	3 cut(s)	435, 468, 753
BveI	ACCTGC	1 cut(s)	640
Cac8I	GCNNGC	1 cut(s)	81
CaiI	CAGNNNCTG	1 cut(s)	392
CfoI	GCGC	2 cut(s)	532, 774
Cfr13I	GGNCC	2 cut(s)	389, 664
ClaI	ATCGAT	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	363
CviAII	CATG	5 cut(s)	85, 168, 197, 331, 668
CviQI	GTAC	1 cut(s)	363
DdeI	CTNAG	6 cut(s)	129, 153, 201, 216, 282, 726
DpnI	GATC	7 cut(s)	57, 149, 264, 279, 303, 590, 884
DpnII	GATC	7 cut(s)	55, 147, 262, 277, 301, 588, 882
EaeI	YGGCCR	2 cut(s)	81, 622
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
Eco147I	AGGCCT	1 cut(s)	158
Eco88I	CYCGRG	1 cut(s)	455
EcoO109I	RGGNCCY	1 cut(s)	389
EcoRI	GAATTC	2 cut(s)	192, 350
EcoRII	CCWGG	5 cut(s)	340, 391, 565, 808, 859
FaeI	CATG	5 cut(s)	88, 171, 200, 334, 671
FalI	AAGNNNNNCTT	2 cut(s)	352, 384
FatI	CATG	5 cut(s)	84, 167, 196, 330, 667
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	451
FokI	GGATG	1 cut(s)	582
Fsp4HI	GCNGC	1 cut(s)	451
FspBI	CTAG	3 cut(s)	498, 764, 831
GlaI	GCGC	2 cut(s)	531, 773
GluI	GCNGC	1 cut(s)	451
HaeII	RGCGCY	1 cut(s)	533
HaeIII	GGCC	6 cut(s)	83, 134, 158, 390, 624, 665
HapII	CCGG	4 cut(s)	533, 621, 788, 921
HhaI	GCGC	2 cut(s)	532, 774
Hin1I	GRCGYC	1 cut(s)	523
Hin1II	CATG	5 cut(s)	88, 171, 200, 334, 671
Hin6I	GCGC	2 cut(s)	530, 772
HinP1I	GCGC	2 cut(s)	530, 772
HinfI	GANTC	1 cut(s)	106
HpaII	CCGG	4 cut(s)	533, 621, 788, 921
HphI	GGTGA	3 cut(s)	43, 802, 884
Hpy166II	GTNNAC	1 cut(s)	676
Hpy188I	TCNGA	2 cut(s)	154, 285
Hpy188III	TCNNGA	2 cut(s)	271, 599
Hpy8I	GTNNAC	1 cut(s)	676
HpyAV	CCTTC	5 cut(s)	22, 69, 190, 311, 655
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4IV	ACGT	3 cut(s)	405, 523, 672
HpyCH4V	TGCA	5 cut(s)	450, 515, 635, 746, 751
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 769
HpyF3I	CTNAG	6 cut(s)	129, 153, 201, 216, 282, 726
HpySE526I	ACGT	3 cut(s)	405, 523, 672
Hsp92I	GRCGYC	1 cut(s)	523
Hsp92II	CATG	5 cut(s)	88, 171, 200, 334, 671
HspAI	GCGC	2 cut(s)	530, 772
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	7 cut(s)	55, 147, 262, 277, 301, 588, 882
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	1 cut(s)	462
LweI	GCATC	2 cut(s)	502, 760
MaeI	CTAG	3 cut(s)	498, 764, 831
MaeII	ACGT	3 cut(s)	405, 523, 672
MaeIII	GTNAC	3 cut(s)	406, 627, 790
MalI	GATC	7 cut(s)	57, 149, 264, 279, 303, 590, 884
MboI	GATC	7 cut(s)	55, 147, 262, 277, 301, 588, 882
MboII	GAAGA	3 cut(s)	62, 298, 892
MflI	RGATCY	1 cut(s)	147
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	5 cut(s)	137, 192, 350, 798, 887
MluNI	TGGCCA	1 cut(s)	83
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	2 cut(s)	915, 940
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	4 cut(s)	533, 621, 788, 921
MspR9I	CCNGG	8 cut(s)	342, 393, 567, 621, 788, 810, 861, 921
MvaI	CCWGG	5 cut(s)	342, 393, 567, 810, 861
MvnI	CGCG	1 cut(s)	774
MwoI	GCNNNNNNNGC	2 cut(s)	164, 769
NciI	CCSGG	3 cut(s)	621, 788, 921
NdeII	GATC	7 cut(s)	55, 147, 262, 277, 301, 588, 882
NlaIII	CATG	5 cut(s)	88, 171, 200, 334, 671
NlaIV	GGNNCC	3 cut(s)	95, 583, 903
NmuCI	GTSAC	1 cut(s)	790
NspI	RCATGY	2 cut(s)	171, 334
PaeR7I	CTCGAG	1 cut(s)	455
PceI	AGGCCT	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	106
PflMI	CCANNNNNTGG	2 cut(s)	90, 341
PkrI	GCNGC	1 cut(s)	452
Psp1406I	AACGTT	1 cut(s)	405
Psp6I	CCWGG	5 cut(s)	340, 391, 565, 808, 859
PspGI	CCWGG	5 cut(s)	340, 391, 565, 808, 859
PspN4I	GGNNCC	3 cut(s)	95, 583, 903
PspPI	GGNCC	2 cut(s)	389, 664
PspXI	VCTCGAGB	1 cut(s)	455
PstI	CTGCAG	2 cut(s)	637, 748
PstNI	CAGNNNCTG	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	147
RsaI	GTAC	1 cut(s)	364
RsaNI	GTAC	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	915, 940
SatI	GCNGC	1 cut(s)	451
Sau3AI	GATC	7 cut(s)	55, 147, 262, 277, 301, 588, 882
Sau96I	GGNCC	2 cut(s)	389, 664
ScaI	AGTACT	1 cut(s)	364
ScrFI	CCNGG	8 cut(s)	342, 393, 567, 621, 788, 810, 861, 921
SfaNI	GCATC	2 cut(s)	502, 760
SfcI	CTRYAG	3 cut(s)	45, 633, 744
Sfr274I	CTCGAG	1 cut(s)	455
SlaI	CTCGAG	1 cut(s)	455
SmlI	CTYRAG	2 cut(s)	271, 455
SmoI	CTYRAG	2 cut(s)	271, 455
Sse9I	AATT	5 cut(s)	137, 192, 350, 798, 887
SseBI	AGGCCT	1 cut(s)	158
SspMI	CTAG	3 cut(s)	498, 764, 831
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	8 cut(s)	340, 391, 565, 619, 786, 808, 859, 919
TaaI	ACNGT	1 cut(s)	505
TaiI	ACGT	3 cut(s)	408, 526, 675
TaqI	TCGA	3 cut(s)	261, 456, 891
TasI	AATT	5 cut(s)	137, 192, 350, 798, 887
TatI	WGTACW	1 cut(s)	362
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	2 cut(s)	915, 940
Tru9I	TTAA	2 cut(s)	915, 940
TscAI	CASTG	3 cut(s)	435, 475, 753
TseFI	GTSAC	1 cut(s)	790
TseI	GCWGC	1 cut(s)	450
Tsp45I	GTSAC	1 cut(s)	790
TspDTI	ATGAA	4 cut(s)	101, 185, 503, 627
TspGWI	ACGGA	1 cut(s)	534
TspRI	CASTG	3 cut(s)	435, 475, 753
Van91I	CCANNNNNTGG	2 cut(s)	90, 341
XapI	RAATTY	4 cut(s)	137, 192, 350, 887
XceI	RCATGY	2 cut(s)	171, 334
XhoI	CTCGAG	1 cut(s)	455
XspI	CTAG	3 cut(s)	498, 764, 831
ZraI	GACGTC	1 cut(s)	524
ZrmI	AGTACT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.