Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G25890 |
| fragaria_vesca | FvH4_2g35280 |
| malus_domestica | MD08G1111200.v1.1 MD15G1090600.v1.1 |
| prunus_persica | Prupe.1G445000_v2.0.a1 Prupe.1G445000_v2.0.a1 Prupe.1G445000_v2.0.a1 |
| pyrus_communis | pycom08g09230 |
| rosa_chinensis | RchiOBHm_Chr6g0306631 |
| rosa_laevigata | RLG00000010778 |
| rosa_multiflora | Rmu_sc0005201.1_g000009 |
| rosa_roxburghii | Rroxscaffold_7G00161590 |
| rosa_rugosa | Rorug06G0351200 |
| rosa_samantha | Rh6AG463500 Rh6BG437400 Rh6CG477800 Rh6DG464500 |
| rosa_wichuraiana | Rw6G040390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 303 |
| AccI | GTMKAC | 1 cut(s) | 390 |
| AciI | CCGC | 1 cut(s) | 158 |
| AclWI | GGATC | 2 cut(s) | 85, 372 |
| AcoI | YGGCCR | 1 cut(s) | 155 |
| AcuI | CTGAAG | 1 cut(s) | 423 |
| AfaI | GTAC | 1 cut(s) | 245 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 126, 149 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 399, 431 |
| AluBI | AGCT | 6 cut(s) | 25, 35, 93, 140, 299, 319 |
| AluI | AGCT | 6 cut(s) | 25, 35, 93, 140, 299, 319 |
| AlwI | GGATC | 2 cut(s) | 85, 372 |
| AoxI | GGCC | 1 cut(s) | 155 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 267 |
| AsuC2I | CCSGG | 1 cut(s) | 175 |
| AsuHPI | GGTGA | 3 cut(s) | 38, 175, 495 |
| AsuNHI | GCTAGC | 1 cut(s) | 31 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 227, 259 |
| BbsI | GAAGAC | 1 cut(s) | 402 |
| BccI | CCATC | 1 cut(s) | 147 |
| BceAI | ACGGC | 2 cut(s) | 204, 314 |
| BcnI | CCSGG | 1 cut(s) | 175 |
| BfaI | CTAG | 2 cut(s) | 32, 507 |
| BisI | GCNGC | 1 cut(s) | 158 |
| BlsI | GCNGC | 1 cut(s) | 159 |
| Bme1390I | CCNGG | 1 cut(s) | 175 |
| BmrFI | CCNGG | 1 cut(s) | 175 |
| BmtI | GCTAGC | 1 cut(s) | 35 |
| BpiI | GAAGAC | 1 cut(s) | 402 |
| BpmI | CTGGAG | 1 cut(s) | 126 |
| Bpu10I | CCTNAGC | 1 cut(s) | 26 |
| BpuMI | CCSGG | 1 cut(s) | 175 |
| BsaJI | CCNNGG | 1 cut(s) | 434 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 399, 429 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 126, 149 |
| Bse118I | RCCGGY | 1 cut(s) | 160 |
| Bse1I | ACTGG | 1 cut(s) | 143 |
| BseDI | CCNNGG | 1 cut(s) | 434 |
| BseGI | GGATG | 3 cut(s) | 158, 170, 433 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 126, 149 |
| BseNI | ACTGG | 1 cut(s) | 143 |
| BseRI | GAGGAG | 2 cut(s) | 27, 218 |
| BshFI | GGCC | 1 cut(s) | 157 |
| BsiSI | CCGG | 2 cut(s) | 161, 175 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 126, 149 |
| BsnI | GGCC | 1 cut(s) | 157 |
| Bsp143I | GATC | 4 cut(s) | 77, 167, 252, 364 |
| BspACI | CCGC | 1 cut(s) | 158 |
| BspANI | GGCC | 1 cut(s) | 157 |
| BspOI | GCTAGC | 1 cut(s) | 35 |
| BspPI | GGATC | 2 cut(s) | 85, 372 |
| BsrFI | RCCGGY | 1 cut(s) | 160 |
| BsrI | ACTGG | 1 cut(s) | 143 |
| BssAI | RCCGGY | 1 cut(s) | 160 |
| BssECI | CCNNGG | 1 cut(s) | 434 |
| BssMI | GATC | 4 cut(s) | 77, 167, 252, 364 |
| BssT1I | CCWWGG | 1 cut(s) | 434 |
| Bst4CI | ACNGT | 1 cut(s) | 457 |
| Bst6I | CTCTTC | 2 cut(s) | 225, 347 |
| BstC8I | GCNNGC | 1 cut(s) | 33 |
| BstDEI | CTNAG | 2 cut(s) | 26, 348 |
| BstF5I | GGATG | 3 cut(s) | 158, 170, 433 |
| BstKTI | GATC | 4 cut(s) | 80, 170, 255, 367 |
| BstMBI | GATC | 4 cut(s) | 77, 167, 252, 364 |
| BstNSI | RCATGY | 2 cut(s) | 329, 473 |
| BstSCI | CCNGG | 1 cut(s) | 173 |
| BstV2I | GAAGAC | 1 cut(s) | 402 |
| BstX2I | RGATCY | 2 cut(s) | 77, 364 |
| BstYI | RGATCY | 2 cut(s) | 77, 364 |
| BsuRI | GGCC | 1 cut(s) | 157 |
| BtsCI | GGATG | 3 cut(s) | 158, 170, 433 |
| BtsIMutI | CAGTG | 2 cut(s) | 150, 399 |
| Cac8I | GCNNGC | 1 cut(s) | 33 |
| Cfr10I | RCCGGY | 1 cut(s) | 160 |
| Csp6I | GTAC | 1 cut(s) | 244 |
| CviAII | CATG | 4 cut(s) | 259, 326, 470, 515 |
| CviJI | RGCY | 8 cut(s) | 25, 31, 35, 93, 140, 157, 299, 319 |
| CviKI_1 | RGCY | 8 cut(s) | 25, 31, 35, 93, 140, 157, 299, 319 |
| CviQI | GTAC | 1 cut(s) | 244 |
| DdeI | CTNAG | 2 cut(s) | 26, 348 |
| DpnI | GATC | 4 cut(s) | 79, 169, 254, 366 |
| DpnII | GATC | 4 cut(s) | 77, 167, 252, 364 |
| DraI | TTTAAA | 1 cut(s) | 477 |
| EaeI | YGGCCR | 1 cut(s) | 155 |
| Eam1104I | CTCTTC | 2 cut(s) | 225, 347 |
| EarI | CTCTTC | 2 cut(s) | 225, 347 |
| Eco130I | CCWWGG | 1 cut(s) | 434 |
| Eco57I | CTGAAG | 1 cut(s) | 423 |
| EcoT14I | CCWWGG | 1 cut(s) | 434 |
| ErhI | CCWWGG | 1 cut(s) | 434 |
| FaeI | CATG | 4 cut(s) | 262, 329, 473, 518 |
| FaiI | YATR | 5 cut(s) | 260, 303, 327, 471, 516 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 276, 308 |
| FatI | CATG | 4 cut(s) | 258, 325, 469, 514 |
| FblI | GTMKAC | 1 cut(s) | 390 |
| Fnu4HI | GCNGC | 1 cut(s) | 158 |
| FokI | GGATG | 3 cut(s) | 157, 165, 440 |
| Fsp4HI | GCNGC | 1 cut(s) | 158 |
| FspBI | CTAG | 2 cut(s) | 32, 507 |
| GluI | GCNGC | 1 cut(s) | 158 |
| GsuI | CTGGAG | 1 cut(s) | 126 |
| HaeIII | GGCC | 1 cut(s) | 157 |
| HapII | CCGG | 2 cut(s) | 161, 175 |
| Hin1II | CATG | 4 cut(s) | 262, 329, 473, 518 |
| HincII | GTYRAC | 2 cut(s) | 289, 334 |
| HindII | GTYRAC | 2 cut(s) | 289, 334 |
| HinfI | GANTC | 1 cut(s) | 356 |
| HpaII | CCGG | 2 cut(s) | 161, 175 |
| HphI | GGTGA | 3 cut(s) | 38, 175, 495 |
| Hpy166II | GTNNAC | 3 cut(s) | 289, 334, 391 |
| Hpy8I | GTNNAC | 3 cut(s) | 289, 334, 391 |
| HpyAV | CCTTC | 5 cut(s) | 211, 229, 257, 398, 502 |
| HpyCH4III | ACNGT | 1 cut(s) | 457 |
| HpyCH4IV | ACGT | 1 cut(s) | 246 |
| HpyCH4V | TGCA | 1 cut(s) | 469 |
| HpyF3I | CTNAG | 2 cut(s) | 26, 348 |
| HpySE526I | ACGT | 1 cut(s) | 246 |
| Hsp92II | CATG | 4 cut(s) | 262, 329, 473, 518 |
| Kzo9I | GATC | 4 cut(s) | 77, 167, 252, 364 |
| LmnI | GCTCC | 3 cut(s) | 22, 40, 145 |
| LpnPI | CCDG | 5 cut(s) | 112, 156, 174, 188, 404 |
| MaeI | CTAG | 2 cut(s) | 32, 507 |
| MaeII | ACGT | 1 cut(s) | 246 |
| MaeIII | GTNAC | 1 cut(s) | 44 |
| MalI | GATC | 4 cut(s) | 79, 169, 254, 366 |
| MboI | GATC | 4 cut(s) | 77, 167, 252, 364 |
| MboII | GAAGA | 8 cut(s) | 17, 20, 223, 226, 242, 291, 334, 407 |
| MflI | RGATCY | 2 cut(s) | 77, 364 |
| MluCI | AATT | 2 cut(s) | 50, 239 |
| MmeI | TCCRAC | 1 cut(s) | 84 |
| MnlI | CCTC | 5 cut(s) | 48, 127, 196, 456, 493 |
| MroXI | GAANNNNTTC | 1 cut(s) | 267 |
| MseI | TTAA | 2 cut(s) | 249, 476 |
| MspI | CCGG | 2 cut(s) | 161, 175 |
| MspR9I | CCNGG | 1 cut(s) | 175 |
| NciI | CCSGG | 1 cut(s) | 175 |
| NdeII | GATC | 4 cut(s) | 77, 167, 252, 364 |
| NheI | GCTAGC | 1 cut(s) | 31 |
| NlaIII | CATG | 4 cut(s) | 262, 329, 473, 518 |
| NmuCI | GTSAC | 1 cut(s) | 44 |
| NspI | RCATGY | 2 cut(s) | 329, 473 |
| PdmI | GAANNNNTTC | 1 cut(s) | 267 |
| PfeI | GAWTC | 1 cut(s) | 356 |
| PfoI | TCCNGGA | 1 cut(s) | 173 |
| PkrI | GCNGC | 1 cut(s) | 159 |
| PsiI | TTATAA | 1 cut(s) | 303 |
| PsuI | RGATCY | 2 cut(s) | 77, 364 |
| RsaI | GTAC | 1 cut(s) | 245 |
| RsaNI | GTAC | 1 cut(s) | 244 |
| SaqAI | TTAA | 2 cut(s) | 249, 476 |
| SatI | GCNGC | 1 cut(s) | 158 |
| Sau3AI | GATC | 4 cut(s) | 77, 167, 252, 364 |
| ScrFI | CCNGG | 1 cut(s) | 175 |
| SgrAI | CRCCGGYG | 1 cut(s) | 160 |
| Sse9I | AATT | 2 cut(s) | 50, 239 |
| SsiI | CCGC | 1 cut(s) | 158 |
| SspMI | CTAG | 2 cut(s) | 32, 507 |
| StyD4I | CCNGG | 1 cut(s) | 173 |
| StyI | CCWWGG | 1 cut(s) | 434 |
| TaaI | ACNGT | 1 cut(s) | 457 |
| TaiI | ACGT | 1 cut(s) | 249 |
| TaqI | TCGA | 1 cut(s) | 95 |
| TasI | AATT | 2 cut(s) | 50, 239 |
| TauI | GCSGC | 1 cut(s) | 160 |
| TfiI | GAWTC | 1 cut(s) | 356 |
| Tru1I | TTAA | 2 cut(s) | 249, 476 |
| Tru9I | TTAA | 2 cut(s) | 249, 476 |
| TscAI | CASTG | 2 cut(s) | 150, 406 |
| TseFI | GTSAC | 1 cut(s) | 44 |
| Tsp45I | GTSAC | 1 cut(s) | 44 |
| TspDTI | ATGAA | 2 cut(s) | 224, 243 |
| TspRI | CASTG | 2 cut(s) | 150, 406 |
| XceI | RCATGY | 2 cut(s) | 329, 473 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 150 |
| XmiI | GTMKAC | 1 cut(s) | 390 |
| XmnI | GAANNNNTTC | 1 cut(s) | 267 |
| XspI | CTAG | 2 cut(s) | 32, 507 |