MD15G1090600.v1.1

Auxin-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0012822
Physical Location & Seq
Reverse (-)
6282056 .. 6284672
2617 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1090600.v1.1.491

Sequence Viewer

Length: 888 bp
ATGGTTAAGTTGTATAATATGATTTGTGAGAATAATGAAGAAGTGGTTGTGAGAGCAAATAAGAGAGGGTATGTTGCAGCTGAAGACAAAAAGCTGGAGCTGAGGCTGGGTCCTCCTGGAGGAGAAGATCGTCAGTCACTTCTCTCCCTTGGTTGCTGCAACAACAATATTCCTCATGAAGCCAAAAGAGCCTGTCATGAAGAGAAAAAAGAAGAGAGAAAGTGGTTGGCAAACAGTTCATCATCAAATCCTGCAGCTAGTGCTTCTGAACTTACGAATTCAGCTGCAGCTCGTGACTCTGATCAGAAAAGTAAAAGCAGAATTGTACATGCTCCAGTTGTCGGGTGGCCTCCGATCCGTTCATCCAGGAAAAATCTTGCAAACAGATCATCATCATCAAGCTTCGCAAACCCGGCAGCTGATTCGGAGTCACCAAATGAAACTTCGAAGGAGGGAAATGGAAAATCTGATGGTACTACTTATTCCAAGCACCACATGTTTGTAAAGATCAACATGGAAGGAGTTCCCATCGGAAGAAAAATTAACCTCAAAGCCTATGATAGTTATGAGAAACTCTCTTTTGCCATATATGAACTCTTTCAAGGTCTTCTTGCAGCTCAAAGAGTTTGTTGTGGCGTGGAGAAAGAAGACAAGAAGGGAGAGACCAAATCAAAAACTGAATCATTACATGGCAGTGGGGAATATACTCTACTCTATGAGGATAATGAAGGGGACAGGATGCTTGTTGGTGATGTCCCATGGAACATGTTTGTATCCACGGCAAAGAGGCTTCGGGTATTGAAGAGCTCACAGCTTTCCACTCTACAACTTTGTAGCAGTCCGCATGAAAAGACACCACTTGATTCTACAGTGGAAGTTGGAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
AUX_IAA

Protein Analysis

296

Amino Acids

32.51

Weight (kDa)

8.36

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 32 - 275 8.2e-62 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012822)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25890
fragaria_vesca FvH4_2g35280
malus_domestica MD08G1111200.v1.1 MD15G1090600.v1.1
prunus_persica Prupe.1G445000_v2.0.a1 Prupe.1G445000_v2.0.a1 Prupe.1G445000_v2.0.a1
pyrus_communis pycom08g09230
rosa_chinensis RchiOBHm_Chr6g0306631
rosa_laevigata RLG00000010778
rosa_multiflora Rmu_sc0005201.1_g000009
rosa_roxburghii Rroxscaffold_7G00161590
rosa_rugosa Rorug06G0351200
rosa_samantha Rh6AG463500 Rh6BG437400 Rh6CG477800 Rh6DG464500
rosa_wichuraiana Rw6G040390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 842
AclWI GGATC 1 cut(s) 349
AcsI RAATTY 1 cut(s) 277
AcuI CTGAAG 1 cut(s) 102
AfaI GTAC 2 cut(s) 327, 475
AfiI CCNNNNNNNGG 2 cut(s) 119, 341
AflIII ACRYGT 2 cut(s) 495, 765
AgsI TTSAA 2 cut(s) 602, 802
AjnI CCWGG 2 cut(s) 115, 365
AjuI GAANNNNNNNTTGG 2 cut(s) 427, 459
Alw21I GWGCWC 1 cut(s) 809
Alw26I GTCTC 1 cut(s) 656
AlwI GGATC 1 cut(s) 349
AoxI GGCC 1 cut(s) 347
ApeKI GCWGC 7 cut(s) 77, 156, 254, 284, 287, 416, 614
ApoI RAATTY 1 cut(s) 277
Asp700I GAANNNNTTC 2 cut(s) 522, 597
AspS9I GGNCC 1 cut(s) 110
AsuC2I CCSGG 1 cut(s) 413
AsuHPI GGTGA 2 cut(s) 423, 761
AsuII TTCGAA 1 cut(s) 446
AvaII GGWCC 1 cut(s) 110
BanII GRGCYC 1 cut(s) 809
BauI CACGAG 1 cut(s) 291
BbsI GAAGAC 3 cut(s) 90, 599, 654
Bbv12I GWGCWC 1 cut(s) 809
BbvCI CCTCAGC 1 cut(s) 101
BbvI GCAGC 7 cut(s) 89, 143, 266, 271, 299, 428, 626
BccI CCATC 2 cut(s) 464, 536
BceAI ACGGC 1 cut(s) 795
BcgI CGANNNNNNTGC 2 cut(s) 405, 439
BciT130I CCWGG 2 cut(s) 117, 367
BciVI GTATCC 1 cut(s) 784
BclI TGATCA 1 cut(s) 301
BcnI CCSGG 1 cut(s) 413
BcoDI GTCTC 1 cut(s) 656
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 3 cut(s) 252, 285, 867
BfuI GTATCC 1 cut(s) 784
BisI GCNGC 7 cut(s) 78, 157, 255, 285, 288, 417, 615
BlsI GCNGC 7 cut(s) 79, 158, 256, 286, 289, 418, 616
Bme1390I CCNGG 3 cut(s) 117, 367, 413
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 111
BmrFI CCNGG 3 cut(s) 117, 367, 413
BmsI GCATC 1 cut(s) 729
BpiI GAAGAC 3 cut(s) 90, 599, 654
BplI GAGNNNNNCTC 2 cut(s) 560, 592
BpmI CTGGAG 3 cut(s) 116, 138, 318
Bpu10I CCTNAGC 1 cut(s) 101
Bpu14I TTCGAA 1 cut(s) 446
BpuMI CCSGG 1 cut(s) 413
BsaBI GATNNNNATC 1 cut(s) 391
BsaI GGTCTC 1 cut(s) 656
BsaJI CCNNGG 3 cut(s) 148, 758, 777
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 341
Bse1I ACTGG 1 cut(s) 335
Bse8I GATNNNNATC 1 cut(s) 391
BseBI CCWGG 2 cut(s) 117, 367
BseDI CCNNGG 3 cut(s) 148, 758, 777
BseGI GGATG 2 cut(s) 362, 744
BseJI GATNNNNATC 1 cut(s) 391
BseLI CCNNNNNNNGG 2 cut(s) 119, 341
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 1 cut(s) 335
BseRI GAGGAG 1 cut(s) 135
BseXI GCAGC 7 cut(s) 89, 143, 266, 271, 299, 428, 626
BseYI CCCAGC 1 cut(s) 106
BshFI GGCC 1 cut(s) 349
BsiHKAI GWGCWC 1 cut(s) 809
BsiSI CCGG 1 cut(s) 413
BslFI GGGAC 2 cut(s) 740, 746
BslI CCNNNNNNNGG 2 cut(s) 119, 341
BsmAI GTCTC 1 cut(s) 656
BsmFI GGGAC 2 cut(s) 740, 746
BsnI GGCC 1 cut(s) 349
Bso31I GGTCTC 1 cut(s) 656
Bsp119I TTCGAA 1 cut(s) 446
Bsp1286I GDGCHC 1 cut(s) 809
Bsp1407I TGTACA 1 cut(s) 325
Bsp143I GATC 5 cut(s) 127, 301, 354, 386, 507
Bsp19I CCATGG 1 cut(s) 758
BspACI CCGC 1 cut(s) 842
BspANI GGCC 1 cut(s) 349
BspCNI CTCAG 1 cut(s) 93
BspHI TCATGA 2 cut(s) 175, 196
BspLI GGNNCC 1 cut(s) 111
BspMAI CTGCAG 2 cut(s) 256, 289
BspPI GGATC 1 cut(s) 349
BspQI GCTCTTC 1 cut(s) 797
BspT104I TTCGAA 1 cut(s) 446
BspTNI GGTCTC 1 cut(s) 656
BsrGI TGTACA 1 cut(s) 325
BsrI ACTGG 1 cut(s) 335
BssECI CCNNGG 3 cut(s) 148, 758, 777
BssMI GATC 5 cut(s) 127, 301, 354, 386, 507
BssSI CACGAG 1 cut(s) 291
BssT1I CCWWGG 2 cut(s) 148, 758
Bst2BI CACGAG 1 cut(s) 291
Bst2UI CCWGG 2 cut(s) 117, 367
Bst4CI ACNGT 2 cut(s) 236, 871
Bst6I CTCTTC 3 cut(s) 195, 207, 797
BstAPI GCANNNNNTGC 1 cut(s) 260
BstAUI TGTACA 1 cut(s) 325
BstBI TTCGAA 1 cut(s) 446
BstDEI CTNAG 1 cut(s) 101
BstDSI CCRYGG 2 cut(s) 758, 777
BstENI CCTNNNNNAGG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 362, 744
BstKTI GATC 5 cut(s) 130, 304, 357, 389, 510
BstMAI GTCTC 1 cut(s) 656
BstMBI GATC 5 cut(s) 127, 301, 354, 386, 507
BstMWI GCNNNNNNNGC 3 cut(s) 188, 260, 413
BstNI CCWGG 2 cut(s) 117, 367
BstNSI RCATGY 3 cut(s) 332, 499, 769
BstSCI CCNGG 3 cut(s) 115, 365, 411
BstSFI CTRYAG 3 cut(s) 252, 285, 867
BstV1I GCAGC 7 cut(s) 89, 143, 266, 271, 299, 428, 626
BstV2I GAAGAC 3 cut(s) 90, 599, 654
BsuI GTATCC 1 cut(s) 784
BsuRI GGCC 1 cut(s) 349
BtgI CCRYGG 2 cut(s) 758, 777
BtsCI GGATG 2 cut(s) 362, 744
BtsI GCAGTG 1 cut(s) 700
BtsIMutI CAGTG 2 cut(s) 700, 876
CciI TCATGA 2 cut(s) 175, 196
Cfr13I GGNCC 1 cut(s) 110
Csp6I GTAC 2 cut(s) 326, 474
CviAII CATG 9 cut(s) 176, 197, 329, 496, 514, 689, 759, 766, 845
CviQI GTAC 2 cut(s) 326, 474
DdeI CTNAG 1 cut(s) 101
DpnI GATC 5 cut(s) 129, 303, 356, 388, 509
DpnII GATC 5 cut(s) 127, 301, 354, 386, 507
Eam1104I CTCTTC 3 cut(s) 195, 207, 797
EarI CTCTTC 3 cut(s) 195, 207, 797
Ecl136II GAGCTC 1 cut(s) 807
Eco130I CCWWGG 2 cut(s) 148, 758
Eco24I GRGCYC 1 cut(s) 809
Eco31I GGTCTC 1 cut(s) 656
Eco47I GGWCC 1 cut(s) 110
Eco53kI GAGCTC 1 cut(s) 807
Eco57I CTGAAG 1 cut(s) 102
EcoICRI GAGCTC 1 cut(s) 807
EcoNI CCTNNNNNAGG 1 cut(s) 117
EcoO109I RGGNCCY 1 cut(s) 110
EcoRI GAATTC 1 cut(s) 277
EcoRII CCWGG 2 cut(s) 115, 365
EcoT14I CCWWGG 2 cut(s) 148, 758
EcoT38I GRGCYC 1 cut(s) 809
ErhI CCWWGG 2 cut(s) 148, 758
FaeI CATG 9 cut(s) 179, 200, 332, 499, 517, 692, 762, 769, 848
FalI AAGNNNNNCTT 2 cut(s) 594, 626
FaqI GGGAC 2 cut(s) 740, 746
FatI CATG 9 cut(s) 175, 196, 328, 495, 513, 688, 758, 765, 844
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 7 cut(s) 78, 157, 255, 285, 288, 417, 615
FokI GGATG 2 cut(s) 349, 751
FriOI GRGCYC 1 cut(s) 809
Fsp4HI GCNGC 7 cut(s) 78, 157, 255, 285, 288, 417, 615
FspBI CTAG 1 cut(s) 258
GluI GCNGC 7 cut(s) 78, 157, 255, 285, 288, 417, 615
GsaI CCCAGC 1 cut(s) 110
GsuI CTGGAG 3 cut(s) 116, 138, 318
HaeIII GGCC 1 cut(s) 349
HapII CCGG 1 cut(s) 413
Hin1II CATG 9 cut(s) 179, 200, 332, 499, 517, 692, 762, 769, 848
HindIII AAGCTT 1 cut(s) 400
HinfI GANTC 6 cut(s) 296, 422, 428, 680, 863, 882
HpaII CCGG 1 cut(s) 413
HphI GGTGA 2 cut(s) 423, 761
Hpy188I TCNGA 8 cut(s) 268, 301, 306, 354, 427, 469, 533, 887
Hpy188III TCNNGA 3 cut(s) 176, 197, 293
HpyAV CCTTC 4 cut(s) 442, 512, 649, 722
HpyCH4III ACNGT 2 cut(s) 236, 871
HpyCH4V TGCA 6 cut(s) 77, 159, 254, 287, 380, 614
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 260, 413
HpyF3I CTNAG 1 cut(s) 101
Hsp92II CATG 9 cut(s) 179, 200, 332, 499, 517, 692, 762, 769, 848
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 5 cut(s) 127, 301, 354, 386, 507
LguI GCTCTTC 1 cut(s) 797
LmnI GCTCC 2 cut(s) 97, 337
Lsp1109I GCAGC 7 cut(s) 89, 143, 266, 271, 299, 428, 626
LweI GCATC 1 cut(s) 729
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 3 cut(s) 135, 293, 429
MalI GATC 5 cut(s) 129, 303, 356, 388, 509
MboI GATC 5 cut(s) 127, 301, 354, 386, 507
MboII GAAGA 9 cut(s) 50, 95, 137, 212, 224, 546, 599, 659, 814
MhlI GDGCHC 1 cut(s) 809
MluCI AATT 3 cut(s) 277, 321, 540
MlyI GAGTC 2 cut(s) 290, 437
MmeI TCCRAC 1 cut(s) 859
MroXI GAANNNNTTC 2 cut(s) 522, 597
MseI TTAA 2 cut(s) 6, 543
MslI CAYNNNNRTG 1 cut(s) 693
MspA1I CMGCKG 3 cut(s) 80, 284, 419
MspI CCGG 1 cut(s) 413
MspR9I CCNGG 3 cut(s) 117, 367, 413
MvaI CCWGG 2 cut(s) 117, 367
MwoI GCNNNNNNNGC 3 cut(s) 188, 260, 413
NciI CCSGG 1 cut(s) 413
NcoI CCATGG 1 cut(s) 758
NdeII GATC 5 cut(s) 127, 301, 354, 386, 507
NlaIII CATG 9 cut(s) 179, 200, 332, 499, 517, 692, 762, 769, 848
NlaIV GGNNCC 1 cut(s) 111
NmuCI GTSAC 3 cut(s) 135, 293, 429
NspI RCATGY 3 cut(s) 332, 499, 769
NspV TTCGAA 1 cut(s) 446
PagI TCATGA 2 cut(s) 175, 196
PciI ACATGT 2 cut(s) 495, 765
PciSI GCTCTTC 1 cut(s) 797
PdmI GAANNNNTTC 2 cut(s) 522, 597
PfeI GAWTC 4 cut(s) 422, 680, 863, 882
PfoI TCCNGGA 2 cut(s) 115, 365
PkrI GCNGC 7 cut(s) 79, 158, 256, 286, 289, 418, 616
PleI GAGTC 2 cut(s) 290, 436
PpsI GAGTC 2 cut(s) 290, 436
PpuMI RGGWCCY 1 cut(s) 110
PscI ACATGT 2 cut(s) 495, 765
Psp124BI GAGCTC 1 cut(s) 809
Psp5II RGGWCCY 1 cut(s) 110
Psp6I CCWGG 2 cut(s) 115, 365
PspFI CCCAGC 1 cut(s) 106
PspGI CCWGG 2 cut(s) 115, 365
PspN4I GGNNCC 1 cut(s) 111
PspPI GGNCC 1 cut(s) 110
PspPPI RGGWCCY 1 cut(s) 110
PstI CTGCAG 2 cut(s) 256, 289
PvuII CAGCTG 3 cut(s) 80, 284, 419
RsaI GTAC 2 cut(s) 327, 475
RsaNI GTAC 2 cut(s) 326, 474
RseI CAYNNNNRTG 1 cut(s) 693
SacI GAGCTC 1 cut(s) 809
SapI GCTCTTC 1 cut(s) 797
SaqAI TTAA 2 cut(s) 6, 543
SatI GCNGC 7 cut(s) 78, 157, 255, 285, 288, 417, 615
Sau3AI GATC 5 cut(s) 127, 301, 354, 386, 507
Sau96I GGNCC 1 cut(s) 110
SchI GAGTC 2 cut(s) 290, 437
ScrFI CCNGG 3 cut(s) 117, 367, 413
SduI GDGCHC 1 cut(s) 809
SfaNI GCATC 1 cut(s) 729
SfcI CTRYAG 3 cut(s) 252, 285, 867
SfuI TTCGAA 1 cut(s) 446
SinI GGWCC 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 693
Sse9I AATT 3 cut(s) 277, 321, 540
SsiI CCGC 1 cut(s) 842
SspI AATATT 1 cut(s) 169
SspMI CTAG 1 cut(s) 258
SstI GAGCTC 1 cut(s) 809
StyD4I CCNGG 3 cut(s) 115, 365, 411
StyI CCWWGG 2 cut(s) 148, 758
TaaI ACNGT 2 cut(s) 236, 871
TaqI TCGA 1 cut(s) 446
TasI AATT 3 cut(s) 277, 321, 540
TatI WGTACW 1 cut(s) 325
TfiI GAWTC 4 cut(s) 422, 680, 863, 882
Tru1I TTAA 2 cut(s) 6, 543
Tru9I TTAA 2 cut(s) 6, 543
TscAI CASTG 2 cut(s) 700, 876
TseFI GTSAC 3 cut(s) 135, 293, 429
TseI GCWGC 7 cut(s) 77, 156, 254, 284, 287, 416, 614
Tsp45I GTSAC 3 cut(s) 135, 293, 429
TspDTI ATGAA 9 cut(s) 51, 192, 213, 228, 351, 453, 606, 741, 861
TspGWI ACGGA 1 cut(s) 347
TspRI CASTG 2 cut(s) 700, 876
VpaK11BI GGWCC 1 cut(s) 110
XagI CCTNNNNNAGG 1 cut(s) 117
XapI RAATTY 1 cut(s) 277
XceI RCATGY 3 cut(s) 332, 499, 769
XcmI CCANNNNNNNNNTGG 1 cut(s) 342
XmnI GAANNNNTTC 2 cut(s) 522, 597
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.