Rh6CG477800

Auxin-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0012822
Physical Location & Seq
Forward (+)
64587035 .. 64589932
2898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG477800.1

Sequence Viewer

Length: 804 bp
ATGGGTCAGTTGTATAATCTTGATGAACTCCATGTAACTGAAGAAATGCCTGTGAGAGCAAATAAGAGAAGCTGTGGTGTTGCATCTGAAGACAAAAAGCTGGAGCTGAGGTTGGGTCCTCCAGGAGATCAAGAACAGTCTGTTCACTCCCAGCTTGGTTTCATTAGTTCTAATCCTGAAGCCAAAAGAGTCTGTCATGACTTACAAGTTAAGGCCAAAAATGAAGAGACAAAGTGGTTGGCAAACACTGCTCAGCATCAGCCAAAGTCTTCCTATTTCCAGTACCCAATGATTCCTCATCCAGATAAGAAAGCGTGTTCAGATCCTGCCACTGCTTCAAAATTTCCCATTTCGGCTGCAGCAAATGGCTCTGATGAGAAAAGTAAAAGCAGAATTGCACAAGCTCCGGTAGTTGGGTGGCCTCCAGTCCGTTCATTCAGAAAAAATCTTGCAAACAAGAGCCTCGCGAAGGCGGCTTCGGATCAGCCACCACTTGAGACTTTGCAGGAGGAGAGTAAAGGAAAATCCGCAGAGAGTAGTACCAAAGAGCATATGTTTGTGAAGATCAACATGGAAGGGGTTCCCATTGGAAGAAAAGTTAACCTCAAAGCCTATGATAGTTATGAGAAGCTCTCCTCCGCCATAGATCACCTCTTCCAAGGTCTTCTTGCTGCTCAAAGAGATCATTCTGCTGTTGAAAAAGAGAACAAGGAAGAGACCAAAGCAATTAGTGATTCATATACTCTACTCTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGTGATGTCCCATGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
AUX_IAA

Protein Analysis

267

Amino Acids

29.65

Weight (kDa)

6.72

Isoelectric Point (pI)

50.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 34 - 267 4.1e-50 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012822)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25890
fragaria_vesca FvH4_2g35280
malus_domestica MD08G1111200.v1.1 MD15G1090600.v1.1
prunus_persica Prupe.1G445000_v2.0.a1 Prupe.1G445000_v2.0.a1 Prupe.1G445000_v2.0.a1
pyrus_communis pycom08g09230
rosa_chinensis RchiOBHm_Chr6g0306631
rosa_laevigata RLG00000010778
rosa_multiflora Rmu_sc0005201.1_g000009
rosa_roxburghii Rroxscaffold_7G00161590
rosa_rugosa Rorug06G0351200
rosa_samantha Rh6AG463500 Rh6BG437400 Rh6CG477800 Rh6DG464500
rosa_wichuraiana Rw6G040390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 467
AciI CCGC 3 cut(s) 473, 528, 639
AclWI GGATC 2 cut(s) 317, 489
AcsI RAATTY 1 cut(s) 341
AcuI CTGAAG 3 cut(s) 60, 108, 198
AfaI GTAC 2 cut(s) 284, 541
AfiI CCNNNNNNNGG 2 cut(s) 413, 469
AgsI TTSAA 2 cut(s) 339, 698
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 6 cut(s) 72, 100, 106, 154, 404, 631
AluI AGCT 6 cut(s) 72, 100, 106, 154, 404, 631
Alw26I GTCTC 4 cut(s) 221, 491, 710, 762
AlwI GGATC 2 cut(s) 317, 489
AlwNI CAGNNNCTG 1 cut(s) 326
AoxI GGCC 2 cut(s) 213, 419
ApeKI GCWGC 3 cut(s) 356, 359, 671
ApoI RAATTY 1 cut(s) 341
Asp700I GAANNNNTTC 1 cut(s) 579
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 641, 797
AvaII GGWCC 1 cut(s) 116
BbsI GAAGAC 3 cut(s) 96, 261, 656
BbvCI CCTCAGC 1 cut(s) 107
BbvI GCAGC 3 cut(s) 343, 371, 658
BciT130I CCWGG 1 cut(s) 123
BcoDI GTCTC 4 cut(s) 221, 491, 710, 762
BfmI CTRYAG 1 cut(s) 357
BisI GCNGC 4 cut(s) 357, 360, 474, 672
BlpI GCTNAGC 1 cut(s) 252
BlsI GCNGC 4 cut(s) 358, 361, 475, 673
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 2 cut(s) 117, 582
BmrFI CCNGG 1 cut(s) 123
BmsI GCATC 3 cut(s) 92, 265, 765
BpiI GAAGAC 3 cut(s) 96, 261, 656
BplI GAGNNNNNCTC 2 cut(s) 617, 649
BpmI CTGGAG 3 cut(s) 105, 122, 408
Bpu10I CCTNAGC 1 cut(s) 107
Bpu1102I GCTNAGC 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 515
BsaI GGTCTC 1 cut(s) 710
BsaJI CCNNGG 2 cut(s) 658, 794
BsaWI WCCGGW 1 cut(s) 406
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 2 cut(s) 413, 469
Bse1I ACTGG 2 cut(s) 280, 425
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 2 cut(s) 658, 794
BseGI GGATG 2 cut(s) 298, 780
BseLI CCNNNNNNNGG 2 cut(s) 413, 469
BseMII CTCAG 2 cut(s) 98, 266
BseNI ACTGG 2 cut(s) 280, 425
BseRI GAGGAG 2 cut(s) 524, 625
BseXI GCAGC 3 cut(s) 343, 371, 658
BseYI CCCAGC 1 cut(s) 150
Bsh1236I CGCG 1 cut(s) 467
BshFI GGCC 2 cut(s) 215, 421
BsiSI CCGG 1 cut(s) 407
BslFI GGGAC 1 cut(s) 776
BslI CCNNNNNNNGG 2 cut(s) 413, 469
BsmAI GTCTC 4 cut(s) 221, 491, 710, 762
BsmFI GGGAC 1 cut(s) 776
BsnI GGCC 2 cut(s) 215, 421
Bso31I GGTCTC 1 cut(s) 710
Bsp143I GATC 6 cut(s) 127, 322, 481, 564, 646, 682
Bsp1720I GCTNAGC 1 cut(s) 252
Bsp19I CCATGG 1 cut(s) 794
Bsp68I TCGCGA 1 cut(s) 467
BspACI CCGC 3 cut(s) 473, 528, 639
BspANI GGCC 2 cut(s) 215, 421
BspCNI CTCAG 2 cut(s) 99, 265
BspFNI CGCG 1 cut(s) 467
BspHI TCATGA 1 cut(s) 196
BspLI GGNNCC 2 cut(s) 117, 582
BspMAI CTGCAG 1 cut(s) 361
BspPI GGATC 2 cut(s) 317, 489
BspTNI GGTCTC 1 cut(s) 710
BsrI ACTGG 2 cut(s) 280, 425
BssECI CCNNGG 2 cut(s) 658, 794
BssMI GATC 6 cut(s) 127, 322, 481, 564, 646, 682
BssT1I CCWWGG 2 cut(s) 658, 794
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 138
Bst6I CTCTTC 3 cut(s) 219, 659, 708
BstAPI GCANNNNNTGC 1 cut(s) 248
BstDEI CTNAG 2 cut(s) 107, 252
BstDSI CCRYGG 1 cut(s) 794
BstENI CCTNNNNNAGG 1 cut(s) 467
BstF5I GGATG 2 cut(s) 298, 780
BstFNI CGCG 1 cut(s) 467
BstKTI GATC 6 cut(s) 130, 325, 484, 567, 649, 685
BstMAI GTCTC 4 cut(s) 221, 491, 710, 762
BstMBI GATC 6 cut(s) 127, 322, 481, 564, 646, 682
BstMWI GCNNNNNNNGC 2 cut(s) 248, 473
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 357
BstUI CGCG 1 cut(s) 467
BstV1I GCAGC 3 cut(s) 343, 371, 658
BstV2I GAAGAC 3 cut(s) 96, 261, 656
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BsuRI GGCC 2 cut(s) 215, 421
BtgI CCRYGG 1 cut(s) 794
BtsCI GGATG 2 cut(s) 298, 780
BtsI GCAGTG 2 cut(s) 246, 330
BtsIMutI CAGTG 2 cut(s) 246, 330
BtuMI TCGCGA 1 cut(s) 467
CaiI CAGNNNCTG 1 cut(s) 326
CciI TCATGA 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 116
Csp6I GTAC 2 cut(s) 283, 540
CviAII CATG 4 cut(s) 32, 197, 571, 795
CviQI GTAC 2 cut(s) 283, 540
DdeI CTNAG 2 cut(s) 107, 252
DpnI GATC 6 cut(s) 129, 324, 483, 566, 648, 684
DpnII GATC 6 cut(s) 127, 322, 481, 564, 646, 682
Eam1104I CTCTTC 3 cut(s) 219, 659, 708
EarI CTCTTC 3 cut(s) 219, 659, 708
EciI GGCGGA 1 cut(s) 628
Eco130I CCWWGG 2 cut(s) 658, 794
Eco31I GGTCTC 1 cut(s) 710
Eco47I GGWCC 1 cut(s) 116
Eco57I CTGAAG 3 cut(s) 60, 108, 198
EcoNI CCTNNNNNAGG 1 cut(s) 467
EcoO109I RGGNCCY 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 2 cut(s) 658, 794
ErhI CCWWGG 2 cut(s) 658, 794
FaeI CATG 4 cut(s) 35, 200, 574, 798
FalI AAGNNNNNCTT 2 cut(s) 651, 683
FaqI GGGAC 1 cut(s) 776
FatI CATG 4 cut(s) 31, 196, 570, 794
FauNDI CATATG 1 cut(s) 552
Fnu4HI GCNGC 4 cut(s) 357, 360, 474, 672
FokI GGATG 2 cut(s) 285, 787
Fsp4HI GCNGC 4 cut(s) 357, 360, 474, 672
GluI GCNGC 4 cut(s) 357, 360, 474, 672
GsaI CCCAGC 1 cut(s) 154
GsuI CTGGAG 3 cut(s) 105, 122, 408
HaeIII GGCC 2 cut(s) 215, 421
HapII CCGG 1 cut(s) 407
Hin1II CATG 4 cut(s) 35, 200, 574, 798
HincII GTYRAC 1 cut(s) 601
HindII GTYRAC 1 cut(s) 601
HinfI GANTC 3 cut(s) 189, 292, 734
HpaI GTTAAC 1 cut(s) 601
HpaII CCGG 1 cut(s) 407
HphI GGTGA 2 cut(s) 641, 797
Hpy166II GTNNAC 2 cut(s) 145, 601
Hpy188I TCNGA 5 cut(s) 88, 322, 373, 440, 481
Hpy188III TCNNGA 6 cut(s) 20, 131, 176, 197, 302, 466
Hpy8I GTNNAC 2 cut(s) 145, 601
HpyAV CCTTC 3 cut(s) 463, 569, 758
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4V TGCA 5 cut(s) 83, 359, 398, 452, 505
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 473
HpyF3I CTNAG 2 cut(s) 107, 252
Hsp92II CATG 4 cut(s) 35, 200, 574, 798
KspAI GTTAAC 1 cut(s) 601
Kzo9I GATC 6 cut(s) 127, 322, 481, 564, 646, 682
LmnI GCTCC 2 cut(s) 103, 409
Lsp1109I GCAGC 3 cut(s) 343, 371, 658
LweI GCATC 3 cut(s) 92, 265, 765
MaeIII GTNAC 1 cut(s) 34
MalI GATC 6 cut(s) 129, 324, 483, 566, 648, 684
MboI GATC 6 cut(s) 127, 322, 481, 564, 646, 682
MboII GAAGA 9 cut(s) 53, 101, 236, 261, 574, 603, 646, 656, 725
MflI RGATCY 1 cut(s) 322
MluCI AATT 3 cut(s) 341, 393, 726
MlyI GAGTC 1 cut(s) 198
MroXI GAANNNNTTC 1 cut(s) 579
MseI TTAA 2 cut(s) 210, 600
MspI CCGG 1 cut(s) 407
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
MvnI CGCG 1 cut(s) 467
MwoI GCNNNNNNNGC 2 cut(s) 248, 473
NcoI CCATGG 1 cut(s) 794
NdeI CATATG 1 cut(s) 552
NdeII GATC 6 cut(s) 127, 322, 481, 564, 646, 682
NlaIII CATG 4 cut(s) 35, 200, 574, 798
NlaIV GGNNCC 2 cut(s) 117, 582
NruI TCGCGA 1 cut(s) 467
PagI TCATGA 1 cut(s) 196
PdmI GAANNNNTTC 1 cut(s) 579
PfeI GAWTC 2 cut(s) 292, 734
PfoI TCCNGGA 1 cut(s) 121
PkrI GCNGC 4 cut(s) 358, 361, 475, 673
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PpuMI RGGWCCY 1 cut(s) 116
Psp5II RGGWCCY 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 150
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 2 cut(s) 117, 582
PspPI GGNCC 1 cut(s) 116
PspPPI RGGWCCY 1 cut(s) 116
PstI CTGCAG 1 cut(s) 361
PstNI CAGNNNCTG 1 cut(s) 326
PsuI RGATCY 1 cut(s) 322
RruI TCGCGA 1 cut(s) 467
RsaI GTAC 2 cut(s) 284, 541
RsaNI GTAC 2 cut(s) 283, 540
SaqAI TTAA 2 cut(s) 210, 600
SatI GCNGC 4 cut(s) 357, 360, 474, 672
Sau3AI GATC 6 cut(s) 127, 322, 481, 564, 646, 682
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 1 cut(s) 198
ScrFI CCNGG 1 cut(s) 123
SfaNI GCATC 3 cut(s) 92, 265, 765
SfcI CTRYAG 1 cut(s) 357
SinI GGWCC 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 3 cut(s) 341, 393, 726
SsiI CCGC 3 cut(s) 473, 528, 639
StyD4I CCNGG 1 cut(s) 121
StyI CCWWGG 2 cut(s) 658, 794
TaaI ACNGT 1 cut(s) 138
TasI AATT 3 cut(s) 341, 393, 726
TauI GCSGC 1 cut(s) 476
TfiI GAWTC 2 cut(s) 292, 734
Tru1I TTAA 2 cut(s) 210, 600
Tru9I TTAA 2 cut(s) 210, 600
TscAI CASTG 2 cut(s) 253, 337
TseI GCWGC 3 cut(s) 356, 359, 671
TspDTI ATGAA 6 cut(s) 39, 151, 237, 423, 726, 777
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 2 cut(s) 253, 337
VpaK11BI GGWCC 1 cut(s) 116
XagI CCTNNNNNAGG 1 cut(s) 467
XapI RAATTY 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.