FvH4_2g35280

Auxin-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012822
Physical Location & Seq
Reverse (-)
26043446 .. 26045141
1696 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35280.t1

Sequence Viewer

Length: 927 bp
ATGGGTCAGTTTCATAATCTTGCTGAACTCCATGTGAGTGAAGAAATGTCTGTGAGAGCAAATAAGAGAAGCTGTGGTATGGCATCTGAGGACAAAAAGCTGGAGCTGAGGTTGGGTCCTCCAGGTGATCAAGACCATTCTGGTCACTCCCAACTTGGTTTCATTACTTCTGATCCTGAAGCCAAAAGAGTCTGTCATGAATCACAAGTTAAGGGCAAAAATGAAGAGACAAAGTGGCTGGCAAATACTGCTCAGCATCAGCCAAAGTCATCCTATTTCAAATGCCCAATGATTCCTCATCCAGATAAGAAAGCGTGTTCGGTTCCTGCCACTGCTTCAAAATTTCCCACTTCAGCTGCAGCAAATGGCTCTGATGAGAAAAGTAAAAGCAGAATTTCACAAGCTCCAGTAGTAGGGTGGCCTCCAGTCCGTTCATTCAGAAAGAATCTTGCAAACAAGTCAAGCCTCGCAAAGCCGGCTTCAGATCAGTCACCACATGAGACTTTGAAGGAGGAGAGTAAAGGAAAATCTGTAGACTGTAACACCAAAGAGCATATGTTTGTGAAGATCAACATGGAAGGAGTTCCCATTGGAAGAAAAATTAACCTCAAAGCCTATGATAGTTATGAGAAGCTCTCTTCTGCCATAGATCACCTCTTCCAAGGTCTTCTTGCTGCTCAAAGAGATTATTCTGCTGTTGAAAAAGAGAACAAGGAAGAGACCAAAACGATAAGTGATTCATATACTCTACTCTATGAGGATAATGAAGGAGACAGGATGCTCGTTGGTGATGTCCCATGGAACATGTTTGTTTCCACGGCAAAGAGGCTGCGTGTTCTAAAGAGCTCAGAGCTATCGACTCTACGACTTAGCAGCAGTCGGCATGAAAAGACACCACTCGAGTCTGCAATGGAAATTGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
AUX_IAA

Protein Analysis

309

Amino Acids

34.24

Weight (kDa)

8.79

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 34 - 288 8.4e-60 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012822)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25890
fragaria_vesca FvH4_2g35280
malus_domestica MD08G1111200.v1.1 MD15G1090600.v1.1
prunus_persica Prupe.1G445000_v2.0.a1 Prupe.1G445000_v2.0.a1 Prupe.1G445000_v2.0.a1
pyrus_communis pycom08g09230
rosa_chinensis RchiOBHm_Chr6g0306631
rosa_laevigata RLG00000010778
rosa_multiflora Rmu_sc0005201.1_g000009
rosa_roxburghii Rroxscaffold_7G00161590
rosa_rugosa Rorug06G0351200
rosa_samantha Rh6AG463500 Rh6BG437400 Rh6CG477800 Rh6DG464500
rosa_wichuraiana Rw6G040390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 534
AclWI GGATC 1 cut(s) 167
AcsI RAATTY 2 cut(s) 341, 393
AcuI CTGAAG 3 cut(s) 198, 336, 465
AfiI CCNNNNNNNGG 1 cut(s) 413
AflIII ACRYGT 1 cut(s) 804
AgsI TTSAA 4 cut(s) 280, 339, 508, 701
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 8 cut(s) 72, 100, 106, 356, 404, 634, 846, 853
AluI AGCT 8 cut(s) 72, 100, 106, 356, 404, 634, 846, 853
Alw21I GWGCWC 1 cut(s) 848
Alw26I GTCTC 4 cut(s) 221, 494, 713, 765
AlwI GGATC 1 cut(s) 167
Ama87I CYCGRG 1 cut(s) 899
AoxI GGCC 1 cut(s) 419
ApeKI GCWGC 5 cut(s) 356, 359, 674, 829, 873
ApoI RAATTY 2 cut(s) 341, 393
Asp700I GAANNNNTTC 1 cut(s) 582
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 4 cut(s) 137, 483, 644, 800
AvaI CYCGRG 1 cut(s) 899
AvaII GGWCC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 848
BbsI GAAGAC 1 cut(s) 659
Bbv12I GWGCWC 1 cut(s) 848
BbvCI CCTCAGC 1 cut(s) 107
BbvI GCAGC 5 cut(s) 343, 371, 661, 816, 885
BceAI ACGGC 1 cut(s) 834
BciT130I CCWGG 1 cut(s) 123
BclI TGATCA 1 cut(s) 127
BcoDI GTCTC 4 cut(s) 221, 494, 713, 765
BfmI CTRYAG 2 cut(s) 357, 531
BisI GCNGC 5 cut(s) 357, 360, 675, 830, 874
BlpI GCTNAGC 1 cut(s) 252
BlsI GCNGC 5 cut(s) 358, 361, 676, 831, 875
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 1 cut(s) 116
BmeT110I CYCGRG 1 cut(s) 899
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 2 cut(s) 117, 324
BmrFI CCNGG 1 cut(s) 123
BmsI GCATC 3 cut(s) 92, 265, 768
BpiI GAAGAC 1 cut(s) 659
BplI GAGNNNNNCTC 2 cut(s) 620, 652
BpmI CTGGAG 4 cut(s) 105, 122, 390, 408
Bpu10I CCTNAGC 1 cut(s) 107
Bpu1102I GCTNAGC 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 713
BsaJI CCNNGG 3 cut(s) 661, 797, 816
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 1 cut(s) 413
Bse118I RCCGGY 1 cut(s) 475
Bse1I ACTGG 2 cut(s) 407, 425
Bse3DI GCAATG 1 cut(s) 915
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 3 cut(s) 661, 797, 816
BseGI GGATG 3 cut(s) 269, 298, 783
BseLI CCNNNNNNNGG 1 cut(s) 413
BseMI GCAATG 1 cut(s) 915
BseMII CTCAG 4 cut(s) 78, 98, 266, 861
BseNI ACTGG 2 cut(s) 407, 425
BseRI GAGGAG 1 cut(s) 527
BseXI GCAGC 5 cut(s) 343, 371, 661, 816, 885
BshFI GGCC 1 cut(s) 421
BsiHKAI GWGCWC 1 cut(s) 848
BsiHKCI CYCGRG 1 cut(s) 899
BsiSI CCGG 1 cut(s) 476
BslFI GGGAC 1 cut(s) 779
BslI CCNNNNNNNGG 1 cut(s) 413
BsmAI GTCTC 4 cut(s) 221, 494, 713, 765
BsmFI GGGAC 1 cut(s) 779
BsnI GGCC 1 cut(s) 421
Bso31I GGTCTC 1 cut(s) 713
BsoBI CYCGRG 1 cut(s) 899
Bsp1286I GDGCHC 1 cut(s) 848
Bsp143I GATC 5 cut(s) 127, 172, 484, 567, 649
Bsp1720I GCTNAGC 1 cut(s) 252
Bsp19I CCATGG 1 cut(s) 797
BspANI GGCC 1 cut(s) 421
BspCNI CTCAG 4 cut(s) 79, 99, 265, 860
BspHI TCATGA 1 cut(s) 196
BspLI GGNNCC 2 cut(s) 117, 324
BspMAI CTGCAG 1 cut(s) 361
BspPI GGATC 1 cut(s) 167
BspTNI GGTCTC 1 cut(s) 713
BsrDI GCAATG 1 cut(s) 915
BsrFI RCCGGY 1 cut(s) 475
BsrI ACTGG 2 cut(s) 407, 425
BssAI RCCGGY 1 cut(s) 475
BssECI CCNNGG 3 cut(s) 661, 797, 816
BssMI GATC 5 cut(s) 127, 172, 484, 567, 649
BssT1I CCWWGG 2 cut(s) 661, 797
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 539
Bst6I CTCTTC 4 cut(s) 219, 643, 662, 711
BstAPI GCANNNNNTGC 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 240, 477
BstDEI CTNAG 5 cut(s) 87, 107, 252, 847, 869
BstDSI CCRYGG 2 cut(s) 797, 816
BstF5I GGATG 3 cut(s) 269, 298, 783
BstKTI GATC 5 cut(s) 130, 175, 487, 570, 652
BstMAI GTCTC 4 cut(s) 221, 494, 713, 765
BstMBI GATC 5 cut(s) 127, 172, 484, 567, 649
BstMWI GCNNNNNNNGC 2 cut(s) 248, 476
BstNI CCWGG 1 cut(s) 123
BstNSI RCATGY 1 cut(s) 808
BstSCI CCNGG 1 cut(s) 121
BstSFI CTRYAG 2 cut(s) 357, 531
BstV1I GCAGC 5 cut(s) 343, 371, 661, 816, 885
BstV2I GAAGAC 1 cut(s) 659
BsuRI GGCC 1 cut(s) 421
BtgI CCRYGG 2 cut(s) 797, 816
BtsCI GGATG 3 cut(s) 269, 298, 783
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 330
Cac8I GCNNGC 2 cut(s) 240, 477
CciI TCATGA 1 cut(s) 196
Cfr10I RCCGGY 1 cut(s) 475
Cfr13I GGNCC 1 cut(s) 116
CviAII CATG 7 cut(s) 32, 197, 497, 574, 798, 805, 884
DdeI CTNAG 5 cut(s) 87, 107, 252, 847, 869
DpnI GATC 5 cut(s) 129, 174, 486, 569, 651
DpnII GATC 5 cut(s) 127, 172, 484, 567, 649
Eam1104I CTCTTC 4 cut(s) 219, 643, 662, 711
EarI CTCTTC 4 cut(s) 219, 643, 662, 711
Ecl136II GAGCTC 1 cut(s) 846
Eco130I CCWWGG 2 cut(s) 661, 797
Eco24I GRGCYC 1 cut(s) 848
Eco31I GGTCTC 1 cut(s) 713
Eco47I GGWCC 1 cut(s) 116
Eco53kI GAGCTC 1 cut(s) 846
Eco57I CTGAAG 3 cut(s) 198, 336, 465
Eco88I CYCGRG 1 cut(s) 899
EcoICRI GAGCTC 1 cut(s) 846
EcoO109I RGGNCCY 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 2 cut(s) 661, 797
EcoT38I GRGCYC 1 cut(s) 848
ErhI CCWWGG 2 cut(s) 661, 797
FaeI CATG 7 cut(s) 35, 200, 500, 577, 801, 808, 887
FalI AAGNNNNNCTT 2 cut(s) 654, 686
FaqI GGGAC 1 cut(s) 779
FatI CATG 7 cut(s) 31, 196, 496, 573, 797, 804, 883
FauNDI CATATG 1 cut(s) 555
FbaI TGATCA 1 cut(s) 127
FblI GTMKAC 1 cut(s) 534
Fnu4HI GCNGC 5 cut(s) 357, 360, 675, 830, 874
FokI GGATG 3 cut(s) 256, 285, 790
FriOI GRGCYC 1 cut(s) 848
Fsp4HI GCNGC 5 cut(s) 357, 360, 675, 830, 874
GluI GCNGC 5 cut(s) 357, 360, 675, 830, 874
GsuI CTGGAG 4 cut(s) 105, 122, 390, 408
HaeIII GGCC 1 cut(s) 421
HapII CCGG 1 cut(s) 476
Hin1II CATG 7 cut(s) 35, 200, 500, 577, 801, 808, 887
HinfI GANTC 7 cut(s) 189, 200, 292, 445, 737, 859, 902
HpaII CCGG 1 cut(s) 476
HphI GGTGA 4 cut(s) 137, 483, 644, 800
Hpy166II GTNNAC 1 cut(s) 535
Hpy188I TCNGA 6 cut(s) 88, 172, 373, 440, 484, 850
Hpy188III TCNNGA 4 cut(s) 131, 176, 197, 302
Hpy8I GTNNAC 1 cut(s) 535
HpyAV CCTTC 3 cut(s) 502, 572, 761
HpyCH4III ACNGT 1 cut(s) 539
HpyCH4V TGCA 3 cut(s) 359, 452, 908
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 476
HpyF3I CTNAG 5 cut(s) 87, 107, 252, 847, 869
Hsp92II CATG 7 cut(s) 35, 200, 500, 577, 801, 808, 887
KroI GCCGGC 1 cut(s) 475
KroNI GCCGGC 1 cut(s) 477
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 5 cut(s) 127, 172, 484, 567, 649
LmnI GCTCC 2 cut(s) 103, 409
Lsp1109I GCAGC 5 cut(s) 343, 371, 661, 816, 885
LweI GCATC 3 cut(s) 92, 265, 768
MaeIII GTNAC 3 cut(s) 143, 489, 539
MalI GATC 5 cut(s) 129, 174, 486, 569, 651
MboI GATC 5 cut(s) 127, 172, 484, 567, 649
MboII GAAGA 8 cut(s) 53, 236, 577, 606, 630, 649, 659, 728
MhlI GDGCHC 1 cut(s) 848
MluCI AATT 4 cut(s) 341, 393, 600, 915
MlyI GAGTC 3 cut(s) 198, 853, 911
MroNI GCCGGC 1 cut(s) 475
MroXI GAANNNNTTC 1 cut(s) 582
MseI TTAA 2 cut(s) 210, 603
MslI CAYNNNNRTG 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 356
MspI CCGG 1 cut(s) 476
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
MwoI GCNNNNNNNGC 2 cut(s) 248, 476
NaeI GCCGGC 1 cut(s) 477
NcoI CCATGG 1 cut(s) 797
NdeI CATATG 1 cut(s) 555
NdeII GATC 5 cut(s) 127, 172, 484, 567, 649
NgoMIV GCCGGC 1 cut(s) 475
NlaIII CATG 7 cut(s) 35, 200, 500, 577, 801, 808, 887
NlaIV GGNNCC 2 cut(s) 117, 324
NmuCI GTSAC 2 cut(s) 143, 489
NspI RCATGY 1 cut(s) 808
PaeR7I CTCGAG 1 cut(s) 899
PagI TCATGA 1 cut(s) 196
PciI ACATGT 1 cut(s) 804
PdiI GCCGGC 1 cut(s) 477
PdmI GAANNNNTTC 1 cut(s) 582
PfeI GAWTC 4 cut(s) 200, 292, 445, 737
PkrI GCNGC 5 cut(s) 358, 361, 676, 831, 875
PleI GAGTC 3 cut(s) 197, 853, 910
PpsI GAGTC 3 cut(s) 197, 853, 910
PpuMI RGGWCCY 1 cut(s) 116
PscI ACATGT 1 cut(s) 804
Psp124BI GAGCTC 1 cut(s) 848
Psp5II RGGWCCY 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 2 cut(s) 117, 324
PspPI GGNCC 1 cut(s) 116
PspPPI RGGWCCY 1 cut(s) 116
PspXI VCTCGAGB 1 cut(s) 899
PstI CTGCAG 1 cut(s) 361
PvuII CAGCTG 1 cut(s) 356
RseI CAYNNNNRTG 1 cut(s) 36
SacI GAGCTC 1 cut(s) 848
SaqAI TTAA 2 cut(s) 210, 603
SatI GCNGC 5 cut(s) 357, 360, 675, 830, 874
Sau3AI GATC 5 cut(s) 127, 172, 484, 567, 649
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 3 cut(s) 198, 853, 911
ScrFI CCNGG 1 cut(s) 123
SduI GDGCHC 1 cut(s) 848
SfaNI GCATC 3 cut(s) 92, 265, 768
SfcI CTRYAG 2 cut(s) 357, 531
Sfr274I CTCGAG 1 cut(s) 899
SinI GGWCC 1 cut(s) 116
SlaI CTCGAG 1 cut(s) 899
SmiMI CAYNNNNRTG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 899
SmoI CTYRAG 1 cut(s) 899
Sse9I AATT 4 cut(s) 341, 393, 600, 915
SstI GAGCTC 1 cut(s) 848
StyD4I CCNGG 1 cut(s) 121
StyI CCWWGG 2 cut(s) 661, 797
TaaI ACNGT 1 cut(s) 539
TaqI TCGA 2 cut(s) 857, 900
TasI AATT 4 cut(s) 341, 393, 600, 915
TfiI GAWTC 4 cut(s) 200, 292, 445, 737
Tru1I TTAA 2 cut(s) 210, 603
Tru9I TTAA 2 cut(s) 210, 603
TscAI CASTG 1 cut(s) 337
TseFI GTSAC 2 cut(s) 143, 489
TseI GCWGC 5 cut(s) 356, 359, 674, 829, 873
Tsp45I GTSAC 2 cut(s) 143, 489
TspDTI ATGAA 7 cut(s) 151, 213, 237, 423, 729, 780, 900
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 1 cut(s) 337
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 2 cut(s) 341, 393
XceI RCATGY 1 cut(s) 808
XcmI CCANNNNNNNNNTGG 1 cut(s) 414
XhoI CTCGAG 1 cut(s) 899
XmiI GTMKAC 1 cut(s) 534
XmnI GAANNNNTTC 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.