Rh6BG437400

Auxin-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0012822
Physical Location & Seq
Reverse (-)
65663537 .. 65666400
2864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG437400.1

Sequence Viewer

Length: 678 bp
ATGGGTCAGTTGTATAATCTTGATGAACTCCATGTAACTGAAGAAATGCCTGTGAGAGCAAATAAGAGAAGCTGTGGTGTTGCATCTGAAGACAAAAAGCTGGAGCTGAGGTTGGGTCCTCCAGGAGATCAAGAACAGTCTGTTCACTCCCAGCTTGGTTTCATTAGTTCTAATCCTGAAGCCAAAAGAGTCTGTCATGACTTACAAGTTAAGGCCAAAAATGAAGAGACAAAGTGGTTGGCAAACACTGCTCAGCATCAGCCAAAGTCTTCCTATTTCCAGTACCCAATGATTCCTCATCCAGATAAGAAAGCGTGTTCAGATCCTGCCACTGCTTCAAAATTTCCCATTTCGGCTGCAGCAAATGGCTCTGATGAGAAAAGTAAAAGCAGAATTGCACAAGCTCCGGTAGTTGGGTGGCCTCCAGTCCGTTCATTCAGAAAAAATCTTGCAAACAAGAGCCTCGCGAAGGCGGCTTCGGATCAGCCACCACTTGAGACTTTGCAGGAGGAGAGTAAAGGAAAATCCGCAGAGAGTAGTACCAAAGAGCATATGTTTGTGAAGATCAACATGGAAGGGGTTCCCATTGGAAGAAAAGTTAACCTCAAAGCCTATGATAGTTATGAGAAGCTCTCCTCTGCCATAGATCACCTCTTCCAAGGTCTTCTTGCTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
AUX_IAA

Protein Analysis

225

Amino Acids

24.75

Weight (kDa)

8.84

Isoelectric Point (pI)

54.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 34 - 224 3.8e-35 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012822)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25890
fragaria_vesca FvH4_2g35280
malus_domestica MD08G1111200.v1.1 MD15G1090600.v1.1
prunus_persica Prupe.1G445000_v2.0.a1 Prupe.1G445000_v2.0.a1 Prupe.1G445000_v2.0.a1
pyrus_communis pycom08g09230
rosa_chinensis RchiOBHm_Chr6g0306631
rosa_laevigata RLG00000010778
rosa_multiflora Rmu_sc0005201.1_g000009
rosa_roxburghii Rroxscaffold_7G00161590
rosa_rugosa Rorug06G0351200
rosa_samantha Rh6AG463500 Rh6BG437400 Rh6CG477800 Rh6DG464500
rosa_wichuraiana Rw6G040390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 467
AciI CCGC 2 cut(s) 473, 528
AclWI GGATC 2 cut(s) 317, 489
AcsI RAATTY 1 cut(s) 341
AcuI CTGAAG 3 cut(s) 60, 108, 198
AfaI GTAC 2 cut(s) 284, 541
AfiI CCNNNNNNNGG 2 cut(s) 413, 469
AgsI TTSAA 1 cut(s) 339
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 6 cut(s) 72, 100, 106, 154, 404, 631
AluI AGCT 6 cut(s) 72, 100, 106, 154, 404, 631
Alw26I GTCTC 2 cut(s) 221, 491
AlwI GGATC 2 cut(s) 317, 489
AlwNI CAGNNNCTG 1 cut(s) 326
AoxI GGCC 2 cut(s) 213, 419
ApeKI GCWGC 2 cut(s) 356, 359
ApoI RAATTY 1 cut(s) 341
Asp700I GAANNNNTTC 1 cut(s) 579
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 641
AvaII GGWCC 1 cut(s) 116
BbsI GAAGAC 3 cut(s) 96, 261, 656
BbvCI CCTCAGC 1 cut(s) 107
BbvI GCAGC 2 cut(s) 343, 371
BciT130I CCWGG 1 cut(s) 123
BcoDI GTCTC 2 cut(s) 221, 491
BfmI CTRYAG 1 cut(s) 357
BisI GCNGC 3 cut(s) 357, 360, 474
BlpI GCTNAGC 1 cut(s) 252
BlsI GCNGC 3 cut(s) 358, 361, 475
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 2 cut(s) 117, 582
BmrFI CCNGG 1 cut(s) 123
BmsI GCATC 2 cut(s) 92, 265
BpiI GAAGAC 3 cut(s) 96, 261, 656
BplI GAGNNNNNCTC 2 cut(s) 617, 649
BpmI CTGGAG 3 cut(s) 105, 122, 408
Bpu10I CCTNAGC 1 cut(s) 107
Bpu1102I GCTNAGC 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 515
BsaJI CCNNGG 1 cut(s) 658
BsaWI WCCGGW 1 cut(s) 406
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 2 cut(s) 413, 469
Bse1I ACTGG 2 cut(s) 280, 425
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 658
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 2 cut(s) 413, 469
BseMII CTCAG 2 cut(s) 98, 266
BseNI ACTGG 2 cut(s) 280, 425
BseRI GAGGAG 2 cut(s) 524, 625
BseXI GCAGC 2 cut(s) 343, 371
BseYI CCCAGC 1 cut(s) 150
Bsh1236I CGCG 1 cut(s) 467
BshFI GGCC 2 cut(s) 215, 421
BsiSI CCGG 1 cut(s) 407
BslI CCNNNNNNNGG 2 cut(s) 413, 469
BsmAI GTCTC 2 cut(s) 221, 491
BsnI GGCC 2 cut(s) 215, 421
Bsp143I GATC 5 cut(s) 127, 322, 481, 564, 646
Bsp1720I GCTNAGC 1 cut(s) 252
Bsp68I TCGCGA 1 cut(s) 467
BspACI CCGC 2 cut(s) 473, 528
BspANI GGCC 2 cut(s) 215, 421
BspCNI CTCAG 2 cut(s) 99, 265
BspFNI CGCG 1 cut(s) 467
BspHI TCATGA 1 cut(s) 196
BspLI GGNNCC 2 cut(s) 117, 582
BspMAI CTGCAG 1 cut(s) 361
BspPI GGATC 2 cut(s) 317, 489
BsrI ACTGG 2 cut(s) 280, 425
BssECI CCNNGG 1 cut(s) 658
BssMI GATC 5 cut(s) 127, 322, 481, 564, 646
BssT1I CCWWGG 1 cut(s) 658
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 138
Bst6I CTCTTC 2 cut(s) 219, 659
BstAPI GCANNNNNTGC 1 cut(s) 248
BstDEI CTNAG 2 cut(s) 107, 252
BstENI CCTNNNNNAGG 1 cut(s) 467
BstF5I GGATG 1 cut(s) 298
BstFNI CGCG 1 cut(s) 467
BstKTI GATC 5 cut(s) 130, 325, 484, 567, 649
BstMAI GTCTC 2 cut(s) 221, 491
BstMBI GATC 5 cut(s) 127, 322, 481, 564, 646
BstMWI GCNNNNNNNGC 2 cut(s) 248, 473
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 357
BstUI CGCG 1 cut(s) 467
BstV1I GCAGC 2 cut(s) 343, 371
BstV2I GAAGAC 3 cut(s) 96, 261, 656
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BsuRI GGCC 2 cut(s) 215, 421
BtsCI GGATG 1 cut(s) 298
BtsI GCAGTG 2 cut(s) 246, 330
BtsIMutI CAGTG 2 cut(s) 246, 330
BtuMI TCGCGA 1 cut(s) 467
CaiI CAGNNNCTG 1 cut(s) 326
CciI TCATGA 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 116
Csp6I GTAC 2 cut(s) 283, 540
CviAII CATG 3 cut(s) 32, 197, 571
CviQI GTAC 2 cut(s) 283, 540
DdeI CTNAG 2 cut(s) 107, 252
DpnI GATC 5 cut(s) 129, 324, 483, 566, 648
DpnII GATC 5 cut(s) 127, 322, 481, 564, 646
Eam1104I CTCTTC 2 cut(s) 219, 659
EarI CTCTTC 2 cut(s) 219, 659
Eco130I CCWWGG 1 cut(s) 658
Eco47I GGWCC 1 cut(s) 116
Eco57I CTGAAG 3 cut(s) 60, 108, 198
EcoNI CCTNNNNNAGG 1 cut(s) 467
EcoO109I RGGNCCY 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 658
ErhI CCWWGG 1 cut(s) 658
FaeI CATG 3 cut(s) 35, 200, 574
FaiI YATR 9 cut(s) 15, 33, 198, 552, 554, 572, 615, 624, 644
FalI AAGNNNNNCTT 1 cut(s) 651
FatI CATG 3 cut(s) 31, 196, 570
FauNDI CATATG 1 cut(s) 552
Fnu4HI GCNGC 3 cut(s) 357, 360, 474
FokI GGATG 1 cut(s) 285
Fsp4HI GCNGC 3 cut(s) 357, 360, 474
GluI GCNGC 3 cut(s) 357, 360, 474
GsaI CCCAGC 1 cut(s) 154
GsuI CTGGAG 3 cut(s) 105, 122, 408
HaeIII GGCC 2 cut(s) 215, 421
HapII CCGG 1 cut(s) 407
Hin1II CATG 3 cut(s) 35, 200, 574
HincII GTYRAC 1 cut(s) 601
HindII GTYRAC 1 cut(s) 601
HinfI GANTC 2 cut(s) 189, 292
HpaI GTTAAC 1 cut(s) 601
HpaII CCGG 1 cut(s) 407
HphI GGTGA 1 cut(s) 641
Hpy166II GTNNAC 2 cut(s) 145, 601
Hpy188I TCNGA 5 cut(s) 88, 322, 373, 440, 481
Hpy188III TCNNGA 6 cut(s) 20, 131, 176, 197, 302, 466
Hpy8I GTNNAC 2 cut(s) 145, 601
HpyAV CCTTC 2 cut(s) 463, 569
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4V TGCA 5 cut(s) 83, 359, 398, 452, 505
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 473
HpyF3I CTNAG 2 cut(s) 107, 252
Hsp92II CATG 3 cut(s) 35, 200, 574
KspAI GTTAAC 1 cut(s) 601
Kzo9I GATC 5 cut(s) 127, 322, 481, 564, 646
LmnI GCTCC 2 cut(s) 103, 409
Lsp1109I GCAGC 2 cut(s) 343, 371
LweI GCATC 2 cut(s) 92, 265
MaeIII GTNAC 1 cut(s) 34
MalI GATC 5 cut(s) 129, 324, 483, 566, 648
MboI GATC 5 cut(s) 127, 322, 481, 564, 646
MboII GAAGA 8 cut(s) 53, 101, 236, 261, 574, 603, 646, 656
MflI RGATCY 1 cut(s) 322
MluCI AATT 2 cut(s) 341, 393
MlyI GAGTC 1 cut(s) 198
MnlI CCTC 9 cut(s) 102, 129, 306, 432, 473, 502, 614, 646, 662
MroXI GAANNNNTTC 1 cut(s) 579
MseI TTAA 2 cut(s) 210, 600
MspI CCGG 1 cut(s) 407
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
MvnI CGCG 1 cut(s) 467
MwoI GCNNNNNNNGC 2 cut(s) 248, 473
NdeI CATATG 1 cut(s) 552
NdeII GATC 5 cut(s) 127, 322, 481, 564, 646
NlaIII CATG 3 cut(s) 35, 200, 574
NlaIV GGNNCC 2 cut(s) 117, 582
NruI TCGCGA 1 cut(s) 467
PagI TCATGA 1 cut(s) 196
PdmI GAANNNNTTC 1 cut(s) 579
PfeI GAWTC 1 cut(s) 292
PfoI TCCNGGA 1 cut(s) 121
PkrI GCNGC 3 cut(s) 358, 361, 475
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PpuMI RGGWCCY 1 cut(s) 116
Psp5II RGGWCCY 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 150
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 2 cut(s) 117, 582
PspPI GGNCC 1 cut(s) 116
PspPPI RGGWCCY 1 cut(s) 116
PstI CTGCAG 1 cut(s) 361
PstNI CAGNNNCTG 1 cut(s) 326
PsuI RGATCY 1 cut(s) 322
RruI TCGCGA 1 cut(s) 467
RsaI GTAC 2 cut(s) 284, 541
RsaNI GTAC 2 cut(s) 283, 540
SaqAI TTAA 2 cut(s) 210, 600
SatI GCNGC 3 cut(s) 357, 360, 474
Sau3AI GATC 5 cut(s) 127, 322, 481, 564, 646
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 1 cut(s) 198
ScrFI CCNGG 1 cut(s) 123
SfaNI GCATC 2 cut(s) 92, 265
SfcI CTRYAG 1 cut(s) 357
SinI GGWCC 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 2 cut(s) 341, 393
SsiI CCGC 2 cut(s) 473, 528
StyD4I CCNGG 1 cut(s) 121
StyI CCWWGG 1 cut(s) 658
TaaI ACNGT 1 cut(s) 138
TasI AATT 2 cut(s) 341, 393
TauI GCSGC 1 cut(s) 476
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 2 cut(s) 210, 600
Tru9I TTAA 2 cut(s) 210, 600
TscAI CASTG 2 cut(s) 253, 337
TseI GCWGC 2 cut(s) 356, 359
TspDTI ATGAA 4 cut(s) 39, 151, 237, 423
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 2 cut(s) 253, 337
VpaK11BI GGWCC 1 cut(s) 116
XagI CCTNNNNNAGG 1 cut(s) 467
XapI RAATTY 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.