Rmu_sc0005201.1_g000009

Auxin-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005201.1
OG0012822
Physical Location & Seq
Reverse (-)
35379 .. 41831
6453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005201.1_g000009.1.cds

Sequence Viewer

Length: 1422 bp
atggaaagcgagagtcacgtccatgtgcgcgtgatttccagtcgtagatgcatcagtggctggaaatcattccacacgcccatgagcaaccggcctcagcatttcttgtgttccgaggttttgattagtgcccaggcgtttatttcccatcacttcctgcattacttggatcagcagcaatttgtccagctggaggatttggaagacgatagtaacccaaactttgtggaggaaattgtgacattgttctacaaagactcatctagactcttccaaaagattgatcaagcactgcatagtgtaccgatggattttgccaagctggatgattacatgcaccagttcaagggtagtagctcaagcattggagctataaaggtgaagaatgaatgcacacaattcaaagaattttgtctggcaggaaatgctgaaggatgcttcagggctttccagagagtgaaacatgagcatgaggcattgaagaggcagcttgaaacttatttccagttgtataatcttgatgaactccatgtaactgaagaaatgcctgtgagagcaaataagagaagctgtggtgttgcatctgaagacaaaaagctggagctgaggttgggtcctccaggagatcaagaacagtctgttcactcccagcttggtttcattagttctaatcctgaagccaaaagagtctgtcatgaattacaagttaaggccaaaaatgaagagacaaagtggttggcaaacactgctcagcatcagcaaaagtcttcctatttccagtgcccaatgattcctcatccagataagaaagcgtgttcagatcctgccactgcttcaaaatttcccatttcggctgcagcaaatggctctgatgagaaaagtaaaagcagaattgcacaagctccggtagttgggtggcctccagtccgttcattcagaaaaaatcttgcaaacaagagcctcgcgaaggcggcttcggatcagtcaccacttgagactttgcaggaggagagtaaaggaaaatccgcagagagtagtaccaaagagcatatgtttgtgaagatcaacatggaaggagttcccattggaagaaaagttaacctcaaagcctatgatagttatgagaagctctcctctgccatagatcacctcttccaaggtcttcttgctgctcaaagagatcattctgctgttgaaaaagagaacaaggaagagaccaaagcaattagtgattcatatactctactctatgaggataatgaaggagacaggatgcttgttggtgatgtcccatggaacatgtttgtttccacggcaaagaggctacgtgtgctaaagagctcagagctatccactctacgacttagcagcagtcggcgtgaaaagacaccactcgagtctgccatggaaattggtagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
AUX_IAA

Protein Analysis

473

Amino Acids

53.56

Weight (kDa)

7.03

Isoelectric Point (pI)

53.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012822)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25890
fragaria_vesca FvH4_2g35280
malus_domestica MD08G1111200.v1.1 MD15G1090600.v1.1
prunus_persica Prupe.1G445000_v2.0.a1 Prupe.1G445000_v2.0.a1 Prupe.1G445000_v2.0.a1
pyrus_communis pycom08g09230
rosa_chinensis RchiOBHm_Chr6g0306631
rosa_laevigata RLG00000010778
rosa_multiflora Rmu_sc0005201.1_g000009
rosa_roxburghii Rroxscaffold_7G00161590
rosa_rugosa Rorug06G0351200
rosa_samantha Rh6AG463500 Rh6BG437400 Rh6CG477800 Rh6DG464500
rosa_wichuraiana Rw6G040390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 30, 965
AciI CCGC 2 cut(s) 971, 1026
AclWI GGATC 3 cut(s) 177, 815, 987
AcsI RAATTY 2 cut(s) 407, 839
AcuI CTGAAG 5 cut(s) 424, 450, 558, 606, 696
AfaI GTAC 2 cut(s) 303, 1039
AfiI CCNNNNNNNGG 4 cut(s) 193, 346, 911, 967
AflIII ACRYGT 2 cut(s) 1299, 1327
AgsI TTSAA 6 cut(s) 346, 403, 481, 494, 837, 1196
AjiI CACGTC 1 cut(s) 19
AjnI CCWGG 2 cut(s) 132, 619
Alw21I GWGCWC 1 cut(s) 1343
Alw26I GTCTC 4 cut(s) 719, 989, 1208, 1260
AlwI GGATC 3 cut(s) 177, 815, 987
AlwNI CAGNNNCTG 2 cut(s) 60, 824
Ama87I CYCGRG 1 cut(s) 1394
AoxI GGCC 3 cut(s) 92, 711, 917
ApeKI GCWGC 6 cut(s) 175, 487, 854, 857, 1169, 1368
ApoI RAATTY 2 cut(s) 407, 839
Asp700I GAANNNNTTC 2 cut(s) 68, 1077
AspLEI GCGC 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 614
AsuHPI GGTGA 4 cut(s) 391, 978, 1139, 1295
AvaI CYCGRG 1 cut(s) 1394
AvaII GGWCC 1 cut(s) 614
BaeGI GKGCMC 2 cut(s) 133, 785
BanII GRGCYC 1 cut(s) 1343
BbsI GAAGAC 4 cut(s) 210, 594, 759, 1154
Bbv12I GWGCWC 1 cut(s) 1343
BbvCI CCTCAGC 2 cut(s) 96, 605
BbvI GCAGC 6 cut(s) 187, 499, 841, 869, 1156, 1380
BccI CCATC 2 cut(s) 156, 301
BceAI ACGGC 1 cut(s) 1329
BciT130I CCWGG 2 cut(s) 134, 621
BclI TGATCA 1 cut(s) 283
BcoDI GTCTC 4 cut(s) 719, 989, 1208, 1260
BfaI CTAG 1 cut(s) 264
BfmI CTRYAG 1 cut(s) 855
BisI GCNGC 7 cut(s) 176, 488, 855, 858, 972, 1170, 1369
BlpI GCTNAGC 1 cut(s) 750
BlsI GCNGC 7 cut(s) 177, 489, 856, 859, 973, 1171, 1370
Bme1390I CCNGG 2 cut(s) 134, 621
Bme18I GGWCC 1 cut(s) 614
BmeT110I CYCGRG 1 cut(s) 1394
BmgBI CACGTC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 614
BmiI GGNNCC 1 cut(s) 615
BmrFI CCNGG 2 cut(s) 134, 621
BmsI GCATC 6 cut(s) 38, 60, 425, 590, 763, 1263
BpiI GAAGAC 4 cut(s) 210, 594, 759, 1154
BplI GAGNNNNNCTC 2 cut(s) 1115, 1147
BpmI CTGGAG 4 cut(s) 212, 603, 620, 906
Bpu10I CCTNAGC 2 cut(s) 96, 605
Bpu1102I GCTNAGC 1 cut(s) 750
BpuEI CTTGAG 2 cut(s) 343, 1013
BsaAI YACGTR 1 cut(s) 1328
BsaI GGTCTC 1 cut(s) 1208
BsaJI CCNNGG 6 cut(s) 114, 132, 1156, 1292, 1311, 1404
BsaWI WCCGGW 1 cut(s) 904
BsaXI ACNNNNNCTCC 2 cut(s) 593, 623
Bsc4I CCNNNNNNNGG 4 cut(s) 193, 346, 911, 967
Bse118I RCCGGY 1 cut(s) 90
Bse1I ACTGG 5 cut(s) 39, 340, 505, 778, 923
BseBI CCWGG 2 cut(s) 134, 621
BseDI CCNNGG 6 cut(s) 114, 132, 1156, 1292, 1311, 1404
BseGI GGATG 4 cut(s) 331, 440, 796, 1278
BseLI CCNNNNNNNGG 4 cut(s) 193, 346, 911, 967
BseMII CTCAG 4 cut(s) 110, 596, 764, 1356
BseNI ACTGG 5 cut(s) 39, 340, 505, 778, 923
BseRI GAGGAG 2 cut(s) 1022, 1123
BseSI GKGCMC 2 cut(s) 133, 785
BseXI GCAGC 6 cut(s) 187, 499, 841, 869, 1156, 1380
BseYI CCCAGC 1 cut(s) 648
Bsh1236I CGCG 2 cut(s) 30, 965
BshFI GGCC 3 cut(s) 94, 713, 919
BsiHKAI GWGCWC 1 cut(s) 1343
BsiHKCI CYCGRG 1 cut(s) 1394
BsiSI CCGG 2 cut(s) 91, 905
BslFI GGGAC 1 cut(s) 1274
BslI CCNNNNNNNGG 4 cut(s) 193, 346, 911, 967
BsmAI GTCTC 4 cut(s) 719, 989, 1208, 1260
BsmFI GGGAC 1 cut(s) 1274
BsmI GAATGC 1 cut(s) 395
BsnI GGCC 3 cut(s) 94, 713, 919
Bso31I GGTCTC 1 cut(s) 1208
BsoBI CYCGRG 1 cut(s) 1394
Bsp1286I GDGCHC 3 cut(s) 133, 785, 1343
Bsp143I GATC 8 cut(s) 169, 283, 625, 820, 979, 1062, 1144, 1180
Bsp1720I GCTNAGC 1 cut(s) 750
Bsp19I CCATGG 2 cut(s) 1292, 1404
Bsp68I TCGCGA 1 cut(s) 965
BspACI CCGC 2 cut(s) 971, 1026
BspANI GGCC 3 cut(s) 94, 713, 919
BspCNI CTCAG 4 cut(s) 109, 597, 763, 1355
BspFNI CGCG 2 cut(s) 30, 965
BspHI TCATGA 1 cut(s) 694
BspLI GGNNCC 1 cut(s) 615
BspMAI CTGCAG 1 cut(s) 859
BspPI GGATC 3 cut(s) 177, 815, 987
BspTNI GGTCTC 1 cut(s) 1208
BsrFI RCCGGY 1 cut(s) 90
BsrI ACTGG 5 cut(s) 39, 340, 505, 778, 923
BssAI RCCGGY 1 cut(s) 90
BssECI CCNNGG 6 cut(s) 114, 132, 1156, 1292, 1311, 1404
BssMI GATC 8 cut(s) 169, 283, 625, 820, 979, 1062, 1144, 1180
BssT1I CCWWGG 3 cut(s) 1156, 1292, 1404
Bst2UI CCWGG 2 cut(s) 134, 621
Bst4CI ACNGT 1 cut(s) 636
Bst6I CTCTTC 5 cut(s) 275, 476, 717, 1157, 1206
BstAPI GCANNNNNTGC 2 cut(s) 425, 746
BstBAI YACGTR 1 cut(s) 1328
BstDEI CTNAG 5 cut(s) 96, 605, 750, 1342, 1364
BstDSI CCRYGG 3 cut(s) 1292, 1311, 1404
BstENI CCTNNNNNAGG 1 cut(s) 965
BstF5I GGATG 4 cut(s) 331, 440, 796, 1278
BstFNI CGCG 2 cut(s) 30, 965
BstHHI GCGC 1 cut(s) 30
BstKTI GATC 8 cut(s) 172, 286, 628, 823, 982, 1065, 1147, 1183
BstMAI GTCTC 4 cut(s) 719, 989, 1208, 1260
BstMBI GATC 8 cut(s) 169, 283, 625, 820, 979, 1062, 1144, 1180
BstMWI GCNNNNNNNGC 5 cut(s) 57, 425, 746, 971, 1330
BstNI CCWGG 2 cut(s) 134, 621
BstNSI RCATGY 2 cut(s) 337, 1303
BstSCI CCNGG 2 cut(s) 132, 619
BstSFI CTRYAG 1 cut(s) 855
BstSLI GKGCMC 2 cut(s) 133, 785
BstUI CGCG 2 cut(s) 30, 965
BstV1I GCAGC 6 cut(s) 187, 499, 841, 869, 1156, 1380
BstV2I GAAGAC 4 cut(s) 210, 594, 759, 1154
BstX2I RGATCY 1 cut(s) 820
BstYI RGATCY 1 cut(s) 820
BsuRI GGCC 3 cut(s) 94, 713, 919
BtgI CCRYGG 3 cut(s) 1292, 1311, 1404
BtrI CACGTC 1 cut(s) 19
BtsCI GGATG 4 cut(s) 331, 440, 796, 1278
BtsI GCAGTG 3 cut(s) 290, 744, 828
BtsIMutI CAGTG 5 cut(s) 61, 290, 744, 785, 828
BtuMI TCGCGA 1 cut(s) 965
CaiI CAGNNNCTG 2 cut(s) 60, 824
CciI TCATGA 1 cut(s) 694
CfoI GCGC 1 cut(s) 30
Cfr10I RCCGGY 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 614
Csp6I GTAC 2 cut(s) 302, 1038
CspCI CAANNNNNGTGG 2 cut(s) 207, 242
CviQI GTAC 2 cut(s) 302, 1038
DdeI CTNAG 5 cut(s) 96, 605, 750, 1342, 1364
DpnI GATC 8 cut(s) 171, 285, 627, 822, 981, 1064, 1146, 1182
DpnII GATC 8 cut(s) 169, 283, 625, 820, 979, 1062, 1144, 1180
Eam1104I CTCTTC 5 cut(s) 275, 476, 717, 1157, 1206
EarI CTCTTC 5 cut(s) 275, 476, 717, 1157, 1206
Ecl136II GAGCTC 1 cut(s) 1341
Eco130I CCWWGG 3 cut(s) 1156, 1292, 1404
Eco24I GRGCYC 1 cut(s) 1343
Eco31I GGTCTC 1 cut(s) 1208
Eco47I GGWCC 1 cut(s) 614
Eco53kI GAGCTC 1 cut(s) 1341
Eco57I CTGAAG 5 cut(s) 424, 450, 558, 606, 696
Eco88I CYCGRG 1 cut(s) 1394
EcoICRI GAGCTC 1 cut(s) 1341
EcoNI CCTNNNNNAGG 1 cut(s) 965
EcoO109I RGGNCCY 1 cut(s) 614
EcoRII CCWGG 2 cut(s) 132, 619
EcoT14I CCWWGG 3 cut(s) 1156, 1292, 1404
EcoT22I ATGCAT 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 1343
ErhI CCWWGG 3 cut(s) 1156, 1292, 1404
FalI AAGNNNNNCTT 2 cut(s) 1149, 1181
FaqI GGGAC 1 cut(s) 1274
FauNDI CATATG 1 cut(s) 1050
FbaI TGATCA 1 cut(s) 283
Fnu4HI GCNGC 7 cut(s) 176, 488, 855, 858, 972, 1170, 1369
FokI GGATG 4 cut(s) 338, 447, 783, 1285
FriOI GRGCYC 1 cut(s) 1343
Fsp4HI GCNGC 7 cut(s) 176, 488, 855, 858, 972, 1170, 1369
FspBI CTAG 1 cut(s) 264
GlaI GCGC 1 cut(s) 29
GluI GCNGC 7 cut(s) 176, 488, 855, 858, 972, 1170, 1369
GsaI CCCAGC 1 cut(s) 652
GsuI CTGGAG 4 cut(s) 212, 603, 620, 906
HaeIII GGCC 3 cut(s) 94, 713, 919
HapII CCGG 2 cut(s) 91, 905
HhaI GCGC 1 cut(s) 30
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HincII GTYRAC 1 cut(s) 1099
HindII GTYRAC 1 cut(s) 1099
HinfI GANTC 7 cut(s) 13, 257, 267, 687, 790, 1232, 1397
HpaI GTTAAC 1 cut(s) 1099
HpaII CCGG 2 cut(s) 91, 905
HphI GGTGA 4 cut(s) 391, 978, 1139, 1295
Hpy166II GTNNAC 3 cut(s) 302, 643, 1099
Hpy188I TCNGA 7 cut(s) 115, 586, 820, 871, 938, 979, 1345
Hpy188III TCNNGA 8 cut(s) 264, 451, 518, 629, 674, 695, 800, 964
Hpy8I GTNNAC 3 cut(s) 302, 643, 1099
HpyAV CCTTC 4 cut(s) 425, 961, 1067, 1256
HpyCH4III ACNGT 1 cut(s) 636
HpyCH4IV ACGT 2 cut(s) 18, 1327
HpyF10VI GCNNNNNNNGC 5 cut(s) 57, 425, 746, 971, 1330
HpyF3I CTNAG 5 cut(s) 96, 605, 750, 1342, 1364
HpySE526I ACGT 2 cut(s) 18, 1327
HspAI GCGC 1 cut(s) 28
Ksp22I TGATCA 1 cut(s) 283
KspAI GTTAAC 1 cut(s) 1099
Kzo9I GATC 8 cut(s) 169, 283, 625, 820, 979, 1062, 1144, 1180
LmnI GCTCC 3 cut(s) 368, 601, 907
Lsp1109I GCAGC 6 cut(s) 187, 499, 841, 869, 1156, 1380
LweI GCATC 6 cut(s) 38, 60, 425, 590, 763, 1263
MaeI CTAG 1 cut(s) 264
MaeII ACGT 2 cut(s) 18, 1327
MaeIII GTNAC 5 cut(s) 14, 212, 238, 532, 984
MalI GATC 8 cut(s) 171, 285, 627, 822, 981, 1064, 1146, 1182
MboI GATC 8 cut(s) 169, 283, 625, 820, 979, 1062, 1144, 1180
MflI RGATCY 1 cut(s) 820
MhlI GDGCHC 3 cut(s) 133, 785, 1343
MluCI AATT 9 cut(s) 179, 234, 398, 407, 698, 839, 891, 1224, 1410
MlyI GAGTC 5 cut(s) 22, 251, 261, 696, 1406
Mph1103I ATGCAT 1 cut(s) 53
MroXI GAANNNNTTC 2 cut(s) 68, 1077
MseI TTAA 2 cut(s) 708, 1098
MslI CAYNNNNRTG 3 cut(s) 21, 80, 468
MspA1I CMGCKG 1 cut(s) 190
MspI CCGG 2 cut(s) 91, 905
MspR9I CCNGG 2 cut(s) 134, 621
Mva1269I GAATGC 1 cut(s) 395
MvaI CCWGG 2 cut(s) 134, 621
MvnI CGCG 2 cut(s) 30, 965
MwoI GCNNNNNNNGC 5 cut(s) 57, 425, 746, 971, 1330
NcoI CCATGG 2 cut(s) 1292, 1404
NdeI CATATG 1 cut(s) 1050
NdeII GATC 8 cut(s) 169, 283, 625, 820, 979, 1062, 1144, 1180
NlaIV GGNNCC 1 cut(s) 615
NmuCI GTSAC 3 cut(s) 14, 238, 984
NruI TCGCGA 1 cut(s) 965
NsiI ATGCAT 1 cut(s) 53
NspI RCATGY 2 cut(s) 337, 1303
PaeR7I CTCGAG 1 cut(s) 1394
PagI TCATGA 1 cut(s) 694
PciI ACATGT 1 cut(s) 1299
PctI GAATGC 1 cut(s) 395
PdmI GAANNNNTTC 2 cut(s) 68, 1077
PfeI GAWTC 2 cut(s) 790, 1232
PfoI TCCNGGA 1 cut(s) 619
PkrI GCNGC 7 cut(s) 177, 489, 856, 859, 973, 1171, 1370
PleI GAGTC 5 cut(s) 21, 251, 261, 695, 1405
PpsI GAGTC 5 cut(s) 21, 251, 261, 695, 1405
Ppu21I YACGTR 1 cut(s) 1328
PpuMI RGGWCCY 1 cut(s) 614
PscI ACATGT 1 cut(s) 1299
Psp124BI GAGCTC 1 cut(s) 1343
Psp5II RGGWCCY 1 cut(s) 614
Psp6I CCWGG 2 cut(s) 132, 619
PspFI CCCAGC 1 cut(s) 648
PspGI CCWGG 2 cut(s) 132, 619
PspN4I GGNNCC 1 cut(s) 615
PspPI GGNCC 1 cut(s) 614
PspPPI RGGWCCY 1 cut(s) 614
PspXI VCTCGAGB 1 cut(s) 1394
PstI CTGCAG 1 cut(s) 859
PstNI CAGNNNCTG 2 cut(s) 60, 824
PsuI RGATCY 1 cut(s) 820
PvuII CAGCTG 1 cut(s) 190
RruI TCGCGA 1 cut(s) 965
RsaI GTAC 2 cut(s) 303, 1039
RsaNI GTAC 2 cut(s) 302, 1038
RseI CAYNNNNRTG 3 cut(s) 21, 80, 468
SacI GAGCTC 1 cut(s) 1343
SaqAI TTAA 2 cut(s) 708, 1098
SatI GCNGC 7 cut(s) 176, 488, 855, 858, 972, 1170, 1369
Sau3AI GATC 8 cut(s) 169, 283, 625, 820, 979, 1062, 1144, 1180
Sau96I GGNCC 1 cut(s) 614
SchI GAGTC 5 cut(s) 22, 251, 261, 696, 1406
ScrFI CCNGG 2 cut(s) 134, 621
SduI GDGCHC 3 cut(s) 133, 785, 1343
SfaNI GCATC 6 cut(s) 38, 60, 425, 590, 763, 1263
SfcI CTRYAG 1 cut(s) 855
Sfr274I CTCGAG 1 cut(s) 1394
SinI GGWCC 1 cut(s) 614
SlaI CTCGAG 1 cut(s) 1394
SmiMI CAYNNNNRTG 3 cut(s) 21, 80, 468
SmlI CTYRAG 3 cut(s) 358, 992, 1394
SmoI CTYRAG 3 cut(s) 358, 992, 1394
Sse9I AATT 9 cut(s) 179, 234, 398, 407, 698, 839, 891, 1224, 1410
SsiI CCGC 2 cut(s) 971, 1026
SspMI CTAG 1 cut(s) 264
SstI GAGCTC 1 cut(s) 1343
StyD4I CCNGG 2 cut(s) 132, 619
StyI CCWWGG 3 cut(s) 1156, 1292, 1404
TaaI ACNGT 1 cut(s) 636
TaiI ACGT 2 cut(s) 21, 1330
TaqI TCGA 1 cut(s) 1395
TasI AATT 9 cut(s) 179, 234, 398, 407, 698, 839, 891, 1224, 1410
TauI GCSGC 1 cut(s) 974
TfiI GAWTC 2 cut(s) 790, 1232
Tru1I TTAA 2 cut(s) 708, 1098
Tru9I TTAA 2 cut(s) 708, 1098
TscAI CASTG 5 cut(s) 61, 297, 751, 785, 835
TseFI GTSAC 3 cut(s) 14, 238, 984
TseI GCWGC 6 cut(s) 175, 487, 854, 857, 1169, 1368
Tsp45I GTSAC 3 cut(s) 14, 238, 984
TspDTI ATGAA 8 cut(s) 402, 537, 649, 711, 735, 921, 1224, 1275
TspGWI ACGGA 1 cut(s) 917
TspRI CASTG 5 cut(s) 61, 297, 751, 785, 835
VpaK11BI GGWCC 1 cut(s) 614
XagI CCTNNNNNAGG 1 cut(s) 965
XapI RAATTY 2 cut(s) 407, 839
XbaI TCTAGA 1 cut(s) 263
XceI RCATGY 2 cut(s) 337, 1303
XhoI CTCGAG 1 cut(s) 1394
XmnI GAANNNNTTC 2 cut(s) 68, 1077
XspI CTAG 1 cut(s) 264
Zsp2I ATGCAT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.