Rorug06G0351200

Auxin-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012822
Physical Location & Seq
Forward (+)
50018353 .. 50018769
417 bp
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UTR
Exon/CDS
Intron
Rorug06G0351200.1

Sequence Viewer

Length: 417 bp
ATGGAGGAAGAAAACGCTGCCGAGCTCAAAATCGGGGATGAGTTCTTAAAGGCGAAGTGTCTAATGAACTGCGAAGTTTCTTTGATTCTTGAACACAGGTTGGCGCAGCTTCAACAGATGTCTGATGATCCCAAAAACAACCAAGTTTCTCAAATATTTGACAAGTCGCTGCAGTATGTGAAGCGCTTTAGCCGTTACAAGAATCCTGATGCTGTTAAACAAGTGCGAGAAACCCTTGGTAATTATCAATTGACTGAGTTTGAGCTCTGTGTTCTTGGCAATCTCTGCACTGAAACAGTTGACGAAGCTATTGCTATGGTGCCAACTCTGAAGGCCAAAGGTCGACGGATGCATGATGATGATGATGCAATTCAAAACATGTTAAGAGACCTGGCTTTTATCAAGAAATTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
AUX_IAA

Protein Analysis

138

Amino Acids

15.92

Weight (kDa)

5.25

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNA_pol_Rpb4 PF03874 20 - 131 1.5e-24 RNA polymerase Rpb4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012822)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25890
fragaria_vesca FvH4_2g35280
malus_domestica MD08G1111200.v1.1 MD15G1090600.v1.1
prunus_persica Prupe.1G445000_v2.0.a1 Prupe.1G445000_v2.0.a1 Prupe.1G445000_v2.0.a1
pyrus_communis pycom08g09230
rosa_chinensis RchiOBHm_Chr6g0306631
rosa_laevigata RLG00000010778
rosa_multiflora Rmu_sc0005201.1_g000009
rosa_roxburghii Rroxscaffold_7G00161590
rosa_rugosa Rorug06G0351200
rosa_samantha Rh6AG463500 Rh6BG437400 Rh6CG477800 Rh6DG464500
rosa_wichuraiana Rw6G040390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 319
AccI GTMKAC 1 cut(s) 343
AclWI GGATC 1 cut(s) 122
AcsI RAATTY 1 cut(s) 407
AcuI CTGAAG 1 cut(s) 350
AfeI AGCGCT 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 378
AgsI TTSAA 3 cut(s) 92, 113, 374
AjnI CCWGG 1 cut(s) 390
AluBI AGCT 4 cut(s) 25, 109, 265, 308
AluI AGCT 4 cut(s) 25, 109, 265, 308
Alw21I GWGCWC 2 cut(s) 27, 267
Alw26I GTCTC 1 cut(s) 381
AlwI GGATC 1 cut(s) 122
Aor51HI AGCGCT 1 cut(s) 185
AoxI GGCC 1 cut(s) 333
ApeKI GCWGC 3 cut(s) 17, 106, 169
ApoI RAATTY 1 cut(s) 407
AspLEI GCGC 2 cut(s) 106, 186
BanI GGYRCC 1 cut(s) 319
BanII GRGCYC 2 cut(s) 27, 267
Bbv12I GWGCWC 2 cut(s) 27, 267
BbvI GCAGC 3 cut(s) 4, 118, 156
BceAI ACGGC 1 cut(s) 177
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BciT130I CCWGG 1 cut(s) 392
BcoDI GTCTC 1 cut(s) 381
BfmI CTRYAG 1 cut(s) 170
BfoI RGCGCY 1 cut(s) 187
BisI GCNGC 3 cut(s) 18, 107, 170
BlsI GCNGC 3 cut(s) 19, 108, 171
Bme1390I CCNGG 1 cut(s) 392
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 1 cut(s) 392
BmsI GCATC 3 cut(s) 199, 339, 355
BsaI GGTCTC 1 cut(s) 381
BsaJI CCNNGG 1 cut(s) 235
BseBI CCWGG 1 cut(s) 392
BseDI CCNNGG 1 cut(s) 235
BseGI GGATG 2 cut(s) 43, 354
BseMII CTCAG 1 cut(s) 246
BseXI GCAGC 3 cut(s) 4, 118, 156
BsgI GTGCAG 1 cut(s) 271
BshFI GGCC 1 cut(s) 335
BshNI GGYRCC 1 cut(s) 319
BsiHKAI GWGCWC 2 cut(s) 27, 267
BsmAI GTCTC 1 cut(s) 381
BsnI GGCC 1 cut(s) 335
Bso31I GGTCTC 1 cut(s) 381
Bsp1286I GDGCHC 2 cut(s) 27, 267
Bsp143I GATC 1 cut(s) 127
BspANI GGCC 1 cut(s) 335
BspCNI CTCAG 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 321
BspMAI CTGCAG 1 cut(s) 174
BspPI GGATC 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 319
BspTNI GGTCTC 1 cut(s) 381
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 392
Bst4CI ACNGT 1 cut(s) 298
BstAPI GCANNNNNTGC 1 cut(s) 285
BstDEI CTNAG 1 cut(s) 255
BstF5I GGATG 2 cut(s) 43, 354
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 2 cut(s) 106, 186
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 1 cut(s) 381
BstMBI GATC 1 cut(s) 127
BstMWI GCNNNNNNNGC 1 cut(s) 285
BstNI CCWGG 1 cut(s) 392
BstNSI RCATGY 1 cut(s) 382
BstSCI CCNGG 1 cut(s) 390
BstSFI CTRYAG 1 cut(s) 170
BstV1I GCAGC 3 cut(s) 4, 118, 156
BsuRI GGCC 1 cut(s) 335
BtsCI GGATG 2 cut(s) 43, 354
BtsIMutI CAGTG 1 cut(s) 288
CfoI GCGC 2 cut(s) 106, 186
CviAII CATG 2 cut(s) 353, 379
CviJI RGCY 7 cut(s) 25, 109, 192, 265, 308, 335, 395
CviKI_1 RGCY 7 cut(s) 25, 109, 192, 265, 308, 335, 395
DdeI CTNAG 1 cut(s) 255
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
Ecl136II GAGCTC 2 cut(s) 25, 265
Eco130I CCWWGG 1 cut(s) 235
Eco24I GRGCYC 2 cut(s) 27, 267
Eco31I GGTCTC 1 cut(s) 381
Eco47III AGCGCT 1 cut(s) 185
Eco53kI GAGCTC 2 cut(s) 25, 265
Eco57I CTGAAG 1 cut(s) 350
EcoICRI GAGCTC 2 cut(s) 25, 265
EcoRII CCWGG 1 cut(s) 390
EcoT14I CCWWGG 1 cut(s) 235
EcoT22I ATGCAT 1 cut(s) 354
EcoT38I GRGCYC 2 cut(s) 27, 267
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 2 cut(s) 356, 382
FaiI YATR 4 cut(s) 177, 317, 354, 380
FatI CATG 2 cut(s) 352, 378
FblI GTMKAC 1 cut(s) 343
Fnu4HI GCNGC 3 cut(s) 18, 107, 170
FokI GGATG 2 cut(s) 50, 361
FriOI GRGCYC 2 cut(s) 27, 267
Fsp4HI GCNGC 3 cut(s) 18, 107, 170
GlaI GCGC 2 cut(s) 105, 185
GluI GCNGC 3 cut(s) 18, 107, 170
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 1 cut(s) 335
HhaI GCGC 2 cut(s) 106, 186
Hin1II CATG 2 cut(s) 356, 382
Hin6I GCGC 2 cut(s) 104, 184
HinP1I GCGC 2 cut(s) 104, 184
HincII GTYRAC 2 cut(s) 301, 344
HindII GTYRAC 2 cut(s) 301, 344
HinfI GANTC 2 cut(s) 85, 202
Hpy166II GTNNAC 2 cut(s) 301, 344
Hpy188I TCNGA 2 cut(s) 124, 330
Hpy188III TCNNGA 4 cut(s) 89, 206, 403, 414
Hpy8I GTNNAC 2 cut(s) 301, 344
Hpy99I CGWCG 1 cut(s) 348
HpyAV CCTTC 1 cut(s) 325
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4V TGCA 4 cut(s) 172, 288, 352, 368
HpyF10VI GCNNNNNNNGC 1 cut(s) 285
HpyF3I CTNAG 1 cut(s) 255
Hsp92II CATG 2 cut(s) 356, 382
HspAI GCGC 2 cut(s) 104, 184
Kzo9I GATC 1 cut(s) 127
LpnPI CCDG 4 cut(s) 82, 219, 377, 404
Lsp1109I GCAGC 3 cut(s) 4, 118, 156
LweI GCATC 3 cut(s) 199, 339, 355
MaeIII GTNAC 1 cut(s) 194
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 1 cut(s) 20
MfeI CAATTG 1 cut(s) 248
MhlI GDGCHC 2 cut(s) 27, 267
MluCI AATT 4 cut(s) 241, 248, 369, 407
Mph1103I ATGCAT 1 cut(s) 354
MseI TTAA 3 cut(s) 47, 216, 383
MslI CAYNNNNRTG 1 cut(s) 357
MspR9I CCNGG 1 cut(s) 392
MunI CAATTG 1 cut(s) 248
MvaI CCWGG 1 cut(s) 392
MwoI GCNNNNNNNGC 1 cut(s) 285
NdeII GATC 1 cut(s) 127
NlaIII CATG 2 cut(s) 356, 382
NlaIV GGNNCC 1 cut(s) 321
NmeAIII GCCGAG 1 cut(s) 46
NsiI ATGCAT 1 cut(s) 354
NspI RCATGY 1 cut(s) 382
PciI ACATGT 1 cut(s) 378
PfeI GAWTC 2 cut(s) 85, 202
PkrI GCNGC 3 cut(s) 19, 108, 171
PscI ACATGT 1 cut(s) 378
Psp124BI GAGCTC 2 cut(s) 27, 267
Psp6I CCWGG 1 cut(s) 390
PspGI CCWGG 1 cut(s) 390
PspN4I GGNNCC 1 cut(s) 321
PstI CTGCAG 1 cut(s) 174
RseI CAYNNNNRTG 1 cut(s) 357
SacI GAGCTC 2 cut(s) 27, 267
SalI GTCGAC 1 cut(s) 342
SaqAI TTAA 3 cut(s) 47, 216, 383
SatI GCNGC 3 cut(s) 18, 107, 170
Sau3AI GATC 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 392
SduI GDGCHC 2 cut(s) 27, 267
SetI ASST 7 cut(s) 27, 101, 111, 267, 310, 343, 393
SfaNI GCATC 3 cut(s) 199, 339, 355
SfcI CTRYAG 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 357
Sse9I AATT 4 cut(s) 241, 248, 369, 407
SspI AATATT 1 cut(s) 156
SstI GAGCTC 2 cut(s) 27, 267
StyD4I CCNGG 1 cut(s) 390
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 1 cut(s) 298
TaqI TCGA 1 cut(s) 343
TasI AATT 4 cut(s) 241, 248, 369, 407
TfiI GAWTC 2 cut(s) 85, 202
Tru1I TTAA 3 cut(s) 47, 216, 383
Tru9I TTAA 3 cut(s) 47, 216, 383
TscAI CASTG 1 cut(s) 295
TseI GCWGC 3 cut(s) 17, 106, 169
TspDTI ATGAA 1 cut(s) 80
TspGWI ACGGA 1 cut(s) 361
TspRI CASTG 1 cut(s) 295
XapI RAATTY 1 cut(s) 407
XceI RCATGY 1 cut(s) 382
XmiI GTMKAC 1 cut(s) 343
Zsp2I ATGCAT 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.