Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013969

Physical Location & Seq

Genomic Coordinates Reverse (-)

9146879 .. 9148391

Gene Structure 1513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G26170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAATGATGCAGACACAAACTTGGGGAGTAGTTTCAGCGATGATACTCACTCTGTGTTCGAGTTTCCGGAGCTAGACTTGTCAGATGAATGGATGGATGATGATCTTGTGTCTGCGGTTTCCGGGATGAATCAGTCTTATGGTTATCAGACTAGTGATGTTGCTGGTGCTTTATTCTCAGGTTCTTCTAGCTGTTTCAGTCATCCTGAATCTCCAAGTACCAAAACTTATGTTGCTGCTACAGCCACTGCTTCTGCCGACAACCAAAACAAGAAAGAAAAGAAAAAAATTAAAGGGAGAGTTGCGTTCAAGACACGGTCCGAGGTGGAAGTGCTTGACGACGGGTTCAAGTGGAGAAAGTATGGGAAGAAGATGGTGAAGAACAGCCCACATCCAAGAAACTACTACAAATGTTCAGTTGATGGCTGTCCCGTGAAGAAAAGGGTTGAACGAGACAGAGATGATCCGAGCTTTGTGATAACAACTTACGAGGGTTCCCACAATCACTCAAGCATGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0098542 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

173

Amino Acids

19.29

Weight (kDa)

5.95

Isoelectric Point (pI)

31.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	113 - 169	1.9e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26170
fragaria_vesca	FvH4_2g31400 FvH4_2g31400
malus_domestica	MD08G1067700.v1.1 MD15G1054000.v1.1
prunus_persica	Prupe.1G407500_v2.0.a1
pyrus_communis	pycom08g05640 pycom15g05090
rosa_chinensis	RchiOBHm_Chr6g0311421
rosa_laevigata	RLG00000010408
rosa_roxburghii	Rroxscaffold_7G00157630
rosa_rugosa	Rorug06G0389000
rosa_samantha	Rh6AG503200 Rh6BG513800 Rh6CG519600 Rh6DG505800
rosa_wichuraiana	Rw6G043820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	67
AciI	CCGC	1 cut(s)	116
AclWI	GGATC	1 cut(s)	458
AdeI	CACNNNGTG	1 cut(s)	55
AfaI	GTAC	1 cut(s)	220
AgsI	TTSAA	3 cut(s)	310, 349, 449
AhlI	ACTAGT	1 cut(s)	152
AluBI	AGCT	3 cut(s)	73, 192, 471
AluI	AGCT	3 cut(s)	73, 192, 471
Alw26I	GTCTC	1 cut(s)	447
AlwI	GGATC	1 cut(s)	458
AlwNI	CAGNNNCTG	1 cut(s)	248
Aor13HI	TCCGGA	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	318
AsuC2I	CCSGG	1 cut(s)	124
AsuHPI	GGTGA	1 cut(s)	388
AvaII	GGWCC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	3 cut(s)	88, 367, 416
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	447
BcuI	ACTAGT	1 cut(s)	152
BfaI	CTAG	3 cut(s)	74, 153, 189
BfmI	CTRYAG	1 cut(s)	240
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	124
Bme18I	GGWCC	1 cut(s)	318
BmgT120I	GGNCC	1 cut(s)	318
BmiI	GGNNCC	1 cut(s)	496
BmrFI	CCNGG	1 cut(s)	124
BpuEI	CTTGAG	1 cut(s)	493
BpuMI	CCSGG	1 cut(s)	124
BsaBI	GATNNNNATC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	321
BsaWI	WCCGGW	1 cut(s)	67
Bse8I	GATNNNNATC	1 cut(s)	102
BseAI	TCCGGA	1 cut(s)	67
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	5 cut(s)	99, 103, 132, 202, 391
BseJI	GATNNNNATC	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	223
BsiSI	CCGG	2 cut(s)	68, 123
BslFI	GGGAC	1 cut(s)	414
BsmAI	GTCTC	1 cut(s)	447
BsmFI	GGGAC	1 cut(s)	414
Bsp13I	TCCGGA	1 cut(s)	67
Bsp143I	GATC	2 cut(s)	103, 463
BspACI	CCGC	1 cut(s)	116
BspCNI	CTCAG	1 cut(s)	191
BspEI	TCCGGA	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	496
BspPI	GGATC	1 cut(s)	458
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	2 cut(s)	103, 463
Bst4CI	ACNGT	1 cut(s)	318
BstDEI	CTNAG	1 cut(s)	178
BstF5I	GGATG	5 cut(s)	99, 103, 132, 202, 391
BstKTI	GATC	2 cut(s)	106, 466
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	2 cut(s)	103, 463
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	122
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	223
BtgZI	GCGATG	1 cut(s)	54
BtsCI	GGATG	5 cut(s)	99, 103, 132, 202, 391
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
CaiI	CAGNNNCTG	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	318
CpoI	CGGWCCG	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	219
CspI	CGGWCCG	1 cut(s)	318
CviAII	CATG	1 cut(s)	514
CviJI	RGCY	6 cut(s)	73, 192, 245, 387, 426, 471
CviKI_1	RGCY	6 cut(s)	73, 192, 245, 387, 426, 471
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	1 cut(s)	178
DpnI	GATC	2 cut(s)	105, 465
DpnII	GATC	2 cut(s)	103, 463
DraIII	CACNNNGTG	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	318
FaeI	CATG	1 cut(s)	517
FaiI	YATR	4 cut(s)	141, 231, 363, 515
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	1 cut(s)	513
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	5 cut(s)	106, 110, 139, 189, 378
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	3 cut(s)	74, 153, 189
GluI	GCNGC	1 cut(s)	237
HapII	CCGG	2 cut(s)	68, 123
Hin1II	CATG	1 cut(s)	517
HinfI	GANTC	2 cut(s)	130, 209
HpaII	CCGG	2 cut(s)	68, 123
HphI	GGTGA	1 cut(s)	388
Hpy188I	TCNGA	4 cut(s)	85, 150, 322, 468
Hpy188III	TCNNGA	3 cut(s)	68, 206, 310
Hpy99I	CGWCG	1 cut(s)	344
HpyCH4III	ACNGT	1 cut(s)	318
HpyCH4V	TGCA	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	1 cut(s)	178
Hsp92II	CATG	1 cut(s)	517
Kpn2I	TCCGGA	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	103, 463
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	5 cut(s)	81, 136, 150, 165, 219
Lsp1109I	GCAGC	1 cut(s)	223
MaeI	CTAG	3 cut(s)	74, 153, 189
MalI	GATC	2 cut(s)	105, 465
MboI	GATC	2 cut(s)	103, 463
MboII	GAAGA	5 cut(s)	177, 379, 382, 391, 448
MluCI	AATT	1 cut(s)	288
MnlI	CCTC	2 cut(s)	316, 484
MroI	TCCGGA	1 cut(s)	67
MseI	TTAA	1 cut(s)	291
MspI	CCGG	2 cut(s)	68, 123
MspR9I	CCNGG	1 cut(s)	124
MwoI	GCNNNNNNNGC	1 cut(s)	242
NciI	CCSGG	1 cut(s)	124
NdeII	GATC	2 cut(s)	103, 463
NlaIII	CATG	1 cut(s)	517
NlaIV	GGNNCC	1 cut(s)	496
PfeI	GAWTC	2 cut(s)	130, 209
PflFI	GACNNNGTC	1 cut(s)	316
PfoI	TCCNGGA	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	496
PspPI	GGNCC	1 cut(s)	318
PstNI	CAGNNNCTG	1 cut(s)	248
PsyI	GACNNNGTC	1 cut(s)	316
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
Rsr2I	CGGWCCG	1 cut(s)	318
RsrII	CGGWCCG	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	2 cut(s)	103, 463
Sau96I	GGNCC	1 cut(s)	318
ScrFI	CCNGG	1 cut(s)	124
SetI	ASST	5 cut(s)	75, 184, 194, 327, 473
SfcI	CTRYAG	1 cut(s)	240
SinI	GGWCC	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	508
SmoI	CTYRAG	1 cut(s)	508
SpeI	ACTAGT	1 cut(s)	152
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	1 cut(s)	116
SspMI	CTAG	3 cut(s)	74, 153, 189
StyD4I	CCNGG	1 cut(s)	122
TaaI	ACNGT	1 cut(s)	318
TaqI	TCGA	1 cut(s)	60
TasI	AATT	1 cut(s)	288
TfiI	GAWTC	2 cut(s)	130, 209
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	1 cut(s)	236
TspDTI	ATGAA	3 cut(s)	17, 102, 143
TspRI	CASTG	1 cut(s)	253
Tth111I	GACNNNGTC	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	318
XspI	CTAG	3 cut(s)	74, 153, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.