Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0013969

Physical Location & Seq

Genomic Coordinates Forward (+)

3057700 .. 3058561

Gene Structure 862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g05090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTCTGGTGGCAACTTCAGGTCAGCAGAGTCACCTGAGACTAATGACTTTTCCGACAACTCGAATTTTGAGTTTTCGGAATTCTTGATGATCGGCGACTGGCTCGATGGAGATCCGAGTTCCGTGGCTTCGGAGTTATCTGTCCAGAATTCGGGTTTTCAAGCAAATGAAGCTGATGAGTCTGGTGCAGGGAGCAGCCAACCAGGAGGTTCTACTAGCAGAGGAGAGAGTGGAAGCAGCCGGGAGAGGCAGGAAACTAGAGAGAGAGTTGCATTCAAAACAAAATCAGAGGTTGAAATATTGGATGACGGGTTCAAGTGGAGGAAGTATGGTAAAAAGGTGGTGAAAAACAGCCCTCATCCAAGGAATTACTACAAGTGCTCAGTTGAAGGGTGCCTTGTGAAAAAGAGAGTTGAAAGAGACAGAGAGGATCCAAGGTTTGTAATTACAACTTATGAGGGTGTCCATAACCACCCAGGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0098542 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

162

Amino Acids

17.94

Weight (kDa)

5.32

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	102 - 159	8.5e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26170
fragaria_vesca	FvH4_2g31400 FvH4_2g31400
malus_domestica	MD08G1067700.v1.1 MD15G1054000.v1.1
prunus_persica	Prupe.1G407500_v2.0.a1
pyrus_communis	pycom08g05640 pycom15g05090
rosa_chinensis	RchiOBHm_Chr6g0311421
rosa_laevigata	RLG00000010408
rosa_roxburghii	Rroxscaffold_7G00157630
rosa_rugosa	Rorug06G0389000
rosa_samantha	Rh6AG503200 Rh6BG513800 Rh6CG519600 Rh6DG505800
rosa_wichuraiana	Rw6G043820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	393
AclWI	GGATC	3 cut(s)	107, 425, 438
AcsI	RAATTY	3 cut(s)	64, 80, 148
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	6 cut(s)	161, 277, 296, 316, 389, 416
AjnI	CCWGG	2 cut(s)	202, 475
AloI	GAACNNNNNNTCC	2 cut(s)	296, 328
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Alw21I	GWGCWC	1 cut(s)	383
Alw26I	GTCTC	2 cut(s)	32, 414
AlwI	GGATC	3 cut(s)	107, 425, 438
AoxI	GGCC	1 cut(s)	478
ApeKI	GCWGC	2 cut(s)	195, 237
ApoI	RAATTY	3 cut(s)	64, 80, 148
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	24, 355
BamHI	GGATCC	1 cut(s)	430
BanI	GGYRCC	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	383
BbvI	GCAGC	2 cut(s)	207, 249
BccI	CCATC	1 cut(s)	101
BciT130I	CCWGG	2 cut(s)	204, 477
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	2 cut(s)	32, 414
BfaI	CTAG	2 cut(s)	216, 258
BisI	GCNGC	2 cut(s)	196, 238
BlsI	GCNGC	2 cut(s)	197, 239
Bme1390I	CCNGG	3 cut(s)	204, 242, 477
BmiI	GGNNCC	2 cut(s)	395, 432
BmrFI	CCNGG	3 cut(s)	204, 242, 477
BpuMI	CCSGG	1 cut(s)	242
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	4 cut(s)	123, 362, 434, 475
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse1I	ACTGG	1 cut(s)	104
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	204, 477
BseDI	CCNNGG	4 cut(s)	123, 362, 434, 475
BseGI	GGATG	2 cut(s)	310, 358
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMII	CTCAG	2 cut(s)	27, 396
BseNI	ACTGG	1 cut(s)	104
BseRI	GAGGAG	1 cut(s)	237
BseXI	GCAGC	2 cut(s)	207, 249
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	480
BshNI	GGYRCC	1 cut(s)	393
BsiHKAI	GWGCWC	1 cut(s)	383
BsiSI	CCGG	1 cut(s)	241
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	2 cut(s)	32, 414
BsmI	GAATGC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	480
Bsp1286I	GDGCHC	1 cut(s)	383
Bsp143I	GATC	3 cut(s)	90, 112, 430
BspANI	GGCC	1 cut(s)	480
BspCNI	CTCAG	2 cut(s)	28, 395
BspLI	GGNNCC	2 cut(s)	395, 432
BspPI	GGATC	3 cut(s)	107, 425, 438
BspT107I	GGYRCC	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	104
BssECI	CCNNGG	4 cut(s)	123, 362, 434, 475
BssMI	GATC	3 cut(s)	90, 112, 430
BssT1I	CCWWGG	2 cut(s)	362, 434
Bst2UI	CCWGG	2 cut(s)	204, 477
BstDEI	CTNAG	2 cut(s)	36, 382
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	2 cut(s)	310, 358
BstKTI	GATC	3 cut(s)	93, 115, 433
BstMAI	GTCTC	2 cut(s)	32, 414
BstMBI	GATC	3 cut(s)	90, 112, 430
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	2 cut(s)	204, 477
BstSCI	CCNGG	3 cut(s)	202, 240, 475
BstV1I	GCAGC	2 cut(s)	207, 249
BstX2I	RGATCY	2 cut(s)	112, 430
BstYI	RGATCY	2 cut(s)	112, 430
BsuRI	GGCC	1 cut(s)	480
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	310, 358
CviJI	RGCY	7 cut(s)	103, 128, 173, 198, 240, 354, 480
CviKI_1	RGCY	7 cut(s)	103, 128, 173, 198, 240, 354, 480
DdeI	CTNAG	2 cut(s)	36, 382
DpnI	GATC	3 cut(s)	92, 114, 432
DpnII	GATC	3 cut(s)	90, 112, 430
Eco130I	CCWWGG	2 cut(s)	362, 434
Eco147I	AGGCCT	1 cut(s)	480
EcoRI	GAATTC	2 cut(s)	80, 148
EcoRII	CCWGG	2 cut(s)	202, 475
EcoT14I	CCWWGG	2 cut(s)	362, 434
ErhI	CCWWGG	2 cut(s)	362, 434
FaiI	YATR	3 cut(s)	330, 456, 468
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
Fnu4HI	GCNGC	2 cut(s)	196, 238
FokI	GGATG	2 cut(s)	317, 345
Fsp4HI	GCNGC	2 cut(s)	196, 238
FspBI	CTAG	2 cut(s)	216, 258
GluI	GCNGC	2 cut(s)	196, 238
HaeIII	GGCC	1 cut(s)	480
HapII	CCGG	1 cut(s)	241
HinfI	GANTC	2 cut(s)	29, 179
HpaII	CCGG	1 cut(s)	241
HphI	GGTGA	2 cut(s)	24, 355
Hpy188I	TCNGA	5 cut(s)	55, 79, 117, 133, 289
Hpy188III	TCNNGA	2 cut(s)	85, 145
HpyAV	CCTTC	1 cut(s)	383
HpyCH4V	TGCA	2 cut(s)	188, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	2 cut(s)	36, 382
Kzo9I	GATC	3 cut(s)	90, 112, 430
LmnI	GCTCC	1 cut(s)	192
Lsp1109I	GCAGC	2 cut(s)	207, 249
MaeI	CTAG	2 cut(s)	216, 258
MaeIII	GTNAC	1 cut(s)	30
MalI	GATC	3 cut(s)	92, 114, 432
MboI	GATC	3 cut(s)	90, 112, 430
MflI	RGATCY	2 cut(s)	112, 430
MhlI	GDGCHC	1 cut(s)	383
MluCI	AATT	5 cut(s)	64, 80, 148, 367, 444
MlyI	GAGTC	2 cut(s)	38, 188
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	8 cut(s)	200, 215, 240, 283, 315, 366, 421, 451
MspI	CCGG	1 cut(s)	241
MspR9I	CCNGG	3 cut(s)	204, 242, 477
Mva1269I	GAATGC	1 cut(s)	272
MvaI	CCWGG	2 cut(s)	204, 477
MwoI	GCNNNNNNNGC	1 cut(s)	170
NciI	CCSGG	1 cut(s)	242
NdeII	GATC	3 cut(s)	90, 112, 430
NlaIV	GGNNCC	2 cut(s)	395, 432
NmuCI	GTSAC	1 cut(s)	30
PceI	AGGCCT	1 cut(s)	480
PctI	GAATGC	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	197, 239
PleI	GAGTC	2 cut(s)	37, 187
PpsI	GAGTC	2 cut(s)	37, 187
Psp6I	CCWGG	2 cut(s)	202, 475
PspGI	CCWGG	2 cut(s)	202, 475
PspN4I	GGNNCC	2 cut(s)	395, 432
PsuI	RGATCY	2 cut(s)	112, 430
SatI	GCNGC	2 cut(s)	196, 238
Sau3AI	GATC	3 cut(s)	90, 112, 430
SchI	GAGTC	2 cut(s)	38, 188
ScrFI	CCNGG	3 cut(s)	204, 242, 477
SduI	GDGCHC	1 cut(s)	383
SetI	ASST	7 cut(s)	23, 37, 175, 211, 294, 342, 440
Sse9I	AATT	5 cut(s)	64, 80, 148, 367, 444
SseBI	AGGCCT	1 cut(s)	480
SspI	AATATT	1 cut(s)	300
SspMI	CTAG	2 cut(s)	216, 258
StuI	AGGCCT	1 cut(s)	480
StyD4I	CCNGG	3 cut(s)	202, 240, 475
StyI	CCWWGG	2 cut(s)	362, 434
TaqI	TCGA	2 cut(s)	62, 105
TasI	AATT	5 cut(s)	64, 80, 148, 367, 444
TseFI	GTSAC	1 cut(s)	30
TseI	GCWGC	2 cut(s)	195, 237
Tsp45I	GTSAC	1 cut(s)	30
TspDTI	ATGAA	1 cut(s)	183
TspGWI	ACGGA	1 cut(s)	112
XapI	RAATTY	3 cut(s)	64, 80, 148
XspI	CTAG	2 cut(s)	216, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.