Rorug06G0389000
WRKY Family

Cell division control protein 48 homolog C-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007658
Physical Location & Seq
Forward (+)
53338688 .. 53341554
2867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0389000.1

Sequence Viewer

Length: 987 bp
ATGGCATCATCATCAACTACCTCCACCGCCGTCTCCCTCCTCTGCTCCGCAACCTCTTCCTCCAGATTTCCATTCAGTACAACTCTTCCCGCCAAATCCTCATCAACGCTCAATTTTCGCGCCAACTCTCTCCCCGCCACCCATGCAGCTTCGTCTTCTTCAGGTAAAGATGAGATTTTGGGGAGAAGAGGACTGGTGTTCACACTCACAGCCACACTGCCATTGCTTCTTCCTTTCTCGGAATCCATGGAGGCCTTTACAGCCAAGGCGGTGGAGCCAGATACAAGTGTATATGAGGTTATGAAGGAAGAGATTAGGAAAGTTGTGTCTAAGGGCAAAGCTGCTGGTGTGCTTCGTTTTGTATTTCATGATGCAGGGACCTTTCAATTGGATGACAATTCGGGTGGCATGAATGGTTCAGTCATATATGAACTCGATAGACCCGAAAATAAAGGTCTTAAAACTCCTTTTAAGATTTTAGAGAAAGCAAAGACTGAGGTGGATGCAGTACAACCAGTATCGTGGGCAGACATGATTGCTGTGGCTGGAGCTGAAGCAGTTTCAGTATGTGGAGGTCCGACTATCCCAGTTGCATTGGGCAGACTAGACTCAAAGGAGCCTGATCCTGAAGGAAAACTTCCTGAAGAAACTCTTGATGCTTATGGTCTAAAGCAAAGCTTTCGAGCAAAAGGCTTATCAACTCAAGAACTTGTTGCTCTGTCAGGTGCCCATACTCTGGGAAATAAAGGTTTCGGAAGCCCAACTGTTTTTGACAATTCATACTTCAAAGTTCTTCTTGAGGAATCTGTGTCCTCAGGTAGTATGTCAAGCATGACTGGACTTCCTTCAGATCGCGCACTTCCCAAGGATGATGAATGCTTAAGATGGATAAAAAAGTATGCCGACAATGAGAACAGTTTCTTTGAAGATTTTGAAAAGGCTTACATCAAGTTGGTCAATTCAGGAGCAAGGTGGAAGAGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
AAA Nucleolin_bd

Protein Analysis

328

Amino Acids

35.15

Weight (kDa)

5.61

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 100 - 303 8.6e-43 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 725
AccB7I CCANNNNNTGG 1 cut(s) 736
AccII CGCG 2 cut(s) 120, 855
AciI CCGC 5 cut(s) 27, 48, 90, 135, 269
AclWI GGATC 1 cut(s) 617
AcuI CTGAAG 5 cut(s) 144, 573, 648, 663, 831
AfaI GTAC 2 cut(s) 79, 510
AfiI CCNNNNNNNGG 1 cut(s) 736
AflII CTTAAG 1 cut(s) 880
AgsI TTSAA 4 cut(s) 386, 787, 926, 935
AluBI AGCT 5 cut(s) 149, 341, 551, 678, 981
AluI AGCT 5 cut(s) 149, 341, 551, 678, 981
Alw26I GTCTC 1 cut(s) 37
AlwI GGATC 1 cut(s) 617
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 2 cut(s) 146, 341
Asp700I GAANNNNTTC 1 cut(s) 917
AspLEI GCGC 2 cut(s) 122, 857
AspS9I GGNCC 2 cut(s) 378, 575
AvaII GGWCC 2 cut(s) 378, 575
AxyI CCTNAGG 1 cut(s) 814
BaeGI GKGCMC 1 cut(s) 730
BaeI ACNNNNGTAYC 2 cut(s) 273, 306
BanI GGYRCC 1 cut(s) 725
BbsI GAAGAC 1 cut(s) 147
BbvI GCAGC 2 cut(s) 158, 328
BccI CCATC 1 cut(s) 879
BceAI ACGGC 1 cut(s) 14
BcgI CGANNNNNNTGC 2 cut(s) 662, 696
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 1 cut(s) 605
BfrI CTTAAG 1 cut(s) 880
BisI GCNGC 2 cut(s) 147, 342
BlsI GCNGC 2 cut(s) 148, 343
Bme18I GGWCC 2 cut(s) 378, 575
BmgT120I GGNCC 2 cut(s) 378, 575
BmiI GGNNCC 4 cut(s) 276, 379, 618, 727
BmrI ACTGGG 1 cut(s) 581
BmsI GCATC 4 cut(s) 14, 361, 493, 646
BmuI ACTGGG 1 cut(s) 581
BpiI GAAGAC 1 cut(s) 147
BpmI CTGGAG 2 cut(s) 46, 567
BpuEI CTTGAG 2 cut(s) 687, 818
BsaJI CCNNGG 3 cut(s) 246, 264, 864
Bsc4I CCNNNNNNNGG 1 cut(s) 736
Bse1I ACTGG 4 cut(s) 198, 515, 587, 841
Bse21I CCTNAGG 1 cut(s) 814
Bse3DI GCAATG 1 cut(s) 221
BseDI CCNNGG 3 cut(s) 246, 264, 864
BseGI GGATG 3 cut(s) 397, 508, 874
BseLI CCNNNNNNNGG 1 cut(s) 736
BseMI GCAATG 1 cut(s) 221
BseMII CTCAG 2 cut(s) 486, 828
BseNI ACTGG 4 cut(s) 198, 515, 587, 841
BseRI GAGGAG 1 cut(s) 29
BseSI GKGCMC 1 cut(s) 730
BseXI GCAGC 2 cut(s) 158, 328
Bsh1236I CGCG 2 cut(s) 120, 855
BshFI GGCC 1 cut(s) 254
BshNI GGYRCC 1 cut(s) 725
BslFI GGGAC 1 cut(s) 391
BslI CCNNNNNNNGG 1 cut(s) 736
BsmAI GTCTC 1 cut(s) 37
BsmBI CGTCTC 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 391
BsmI GAATGC 1 cut(s) 881
BsnI GGCC 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 730
Bsp143I GATC 2 cut(s) 622, 850
Bsp19I CCATGG 1 cut(s) 246
BspACI CCGC 5 cut(s) 27, 48, 90, 135, 269
BspANI GGCC 1 cut(s) 254
BspCNI CTCAG 2 cut(s) 487, 827
BspFNI CGCG 2 cut(s) 120, 855
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 4 cut(s) 276, 379, 618, 727
BspPI GGATC 1 cut(s) 617
BspQI GCTCTTC 1 cut(s) 971
BspT107I GGYRCC 1 cut(s) 725
BspTI CTTAAG 1 cut(s) 880
BsrDI GCAATG 1 cut(s) 221
BsrI ACTGG 4 cut(s) 198, 515, 587, 841
BssECI CCNNGG 3 cut(s) 246, 264, 864
BssMI GATC 2 cut(s) 622, 850
BssT1I CCWWGG 3 cut(s) 246, 264, 864
Bst4CI ACNGT 2 cut(s) 766, 917
Bst6I CTCTTC 5 cut(s) 61, 90, 181, 303, 971
BstAFI CTTAAG 1 cut(s) 880
BstDEI CTNAG 3 cut(s) 330, 495, 814
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 3 cut(s) 397, 508, 874
BstFNI CGCG 2 cut(s) 120, 855
BstHHI GCGC 2 cut(s) 122, 857
BstKTI GATC 2 cut(s) 625, 853
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 2 cut(s) 622, 850
BstMWI GCNNNNNNNGC 2 cut(s) 143, 260
BstSLI GKGCMC 1 cut(s) 730
BstUI CGCG 2 cut(s) 120, 855
BstV1I GCAGC 2 cut(s) 158, 328
BstV2I GAAGAC 1 cut(s) 147
BstXI CCANNNNNNTGG 2 cut(s) 271, 522
Bsu36I CCTNAGG 1 cut(s) 814
BsuRI GGCC 1 cut(s) 254
BtgI CCRYGG 1 cut(s) 246
BtsCI GGATG 3 cut(s) 397, 508, 874
BtsI GCAGTG 1 cut(s) 215
BtsIMutI CAGTG 1 cut(s) 215
CciI TCATGA 1 cut(s) 367
CfoI GCGC 2 cut(s) 122, 857
Cfr13I GGNCC 2 cut(s) 378, 575
Csp6I GTAC 2 cut(s) 78, 509
CspCI CAANNNNNGTGG 2 cut(s) 385, 420
CviAII CATG 6 cut(s) 143, 247, 368, 409, 532, 832
CviQI GTAC 2 cut(s) 78, 509
DdeI CTNAG 3 cut(s) 330, 495, 814
DpnI GATC 2 cut(s) 624, 852
DpnII GATC 2 cut(s) 622, 850
Eam1104I CTCTTC 5 cut(s) 61, 90, 181, 303, 971
EarI CTCTTC 5 cut(s) 61, 90, 181, 303, 971
Eco130I CCWWGG 3 cut(s) 246, 264, 864
Eco147I AGGCCT 1 cut(s) 254
Eco47I GGWCC 2 cut(s) 378, 575
Eco57I CTGAAG 5 cut(s) 144, 573, 648, 663, 831
Eco81I CCTNAGG 1 cut(s) 814
EcoO109I RGGNCCY 1 cut(s) 378
EcoT14I CCWWGG 3 cut(s) 246, 264, 864
ErhI CCWWGG 3 cut(s) 246, 264, 864
Esp3I CGTCTC 1 cut(s) 37
FaeI CATG 6 cut(s) 146, 250, 371, 412, 535, 835
FalI AAGNNNNNCTT 8 cut(s) 621, 653, 636, 668, 662, 694, 780, 812
FaqI GGGAC 1 cut(s) 391
FatI CATG 6 cut(s) 142, 246, 367, 408, 531, 831
FauI CCCGC 2 cut(s) 97, 142
Fnu4HI GCNGC 2 cut(s) 147, 342
FokI GGATG 3 cut(s) 404, 515, 881
Fsp4HI GCNGC 2 cut(s) 147, 342
FspBI CTAG 1 cut(s) 605
GlaI GCGC 2 cut(s) 121, 856
GluI GCNGC 2 cut(s) 147, 342
GsuI CTGGAG 2 cut(s) 46, 567
HaeIII GGCC 1 cut(s) 254
HhaI GCGC 2 cut(s) 122, 857
Hin1II CATG 6 cut(s) 146, 250, 371, 412, 535, 835
Hin6I GCGC 2 cut(s) 120, 855
HinP1I GCGC 2 cut(s) 120, 855
HindIII AAGCTT 1 cut(s) 676
HinfI GANTC 3 cut(s) 242, 608, 803
Hpy166II GTNNAC 1 cut(s) 201
Hpy188I TCNGA 4 cut(s) 241, 579, 755, 850
Hpy188III TCNNGA 8 cut(s) 63, 368, 626, 641, 653, 704, 797, 963
Hpy8I GTNNAC 1 cut(s) 201
HpyAV CCTTC 3 cut(s) 298, 623, 855
HpyCH4III ACNGT 2 cut(s) 766, 917
HpyCH4V TGCA 4 cut(s) 146, 374, 506, 593
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 260
HpyF3I CTNAG 3 cut(s) 330, 495, 814
Hsp92II CATG 6 cut(s) 146, 250, 371, 412, 535, 835
HspAI GCGC 2 cut(s) 120, 855
Kzo9I GATC 2 cut(s) 622, 850
LguI GCTCTTC 1 cut(s) 971
LmnI GCTCC 5 cut(s) 50, 274, 548, 616, 965
Lsp1109I GCAGC 2 cut(s) 158, 328
LweI GCATC 4 cut(s) 14, 361, 493, 646
MaeI CTAG 1 cut(s) 605
MalI GATC 2 cut(s) 624, 852
MboI GATC 2 cut(s) 622, 850
MfeI CAATTG 1 cut(s) 386
MhlI GDGCHC 1 cut(s) 730
MluCI AATT 5 cut(s) 112, 386, 397, 775, 958
MlyI GAGTC 1 cut(s) 602
MmeI TCCRAC 1 cut(s) 602
MroXI GAANNNNTTC 1 cut(s) 917
MseI TTAA 3 cut(s) 459, 471, 881
MspCI CTTAAG 1 cut(s) 880
MunI CAATTG 1 cut(s) 386
Mva1269I GAATGC 1 cut(s) 881
MvnI CGCG 2 cut(s) 120, 855
MwoI GCNNNNNNNGC 2 cut(s) 143, 260
NcoI CCATGG 1 cut(s) 246
NdeII GATC 2 cut(s) 622, 850
NlaIII CATG 6 cut(s) 146, 250, 371, 412, 535, 835
NlaIV GGNNCC 4 cut(s) 276, 379, 618, 727
PagI TCATGA 1 cut(s) 367
PceI AGGCCT 1 cut(s) 254
PciSI GCTCTTC 1 cut(s) 971
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PctI GAATGC 1 cut(s) 881
PdmI GAANNNNTTC 1 cut(s) 917
PfeI GAWTC 2 cut(s) 242, 803
PflMI CCANNNNNTGG 1 cut(s) 736
PkrI GCNGC 2 cut(s) 148, 343
PleI GAGTC 1 cut(s) 602
PpsI GAGTC 1 cut(s) 602
PpuMI RGGWCCY 1 cut(s) 378
Psp5II RGGWCCY 1 cut(s) 378
PspN4I GGNNCC 4 cut(s) 276, 379, 618, 727
PspPI GGNCC 2 cut(s) 378, 575
PspPPI RGGWCCY 1 cut(s) 378
RsaI GTAC 2 cut(s) 79, 510
RsaNI GTAC 2 cut(s) 78, 509
SapI GCTCTTC 1 cut(s) 971
SaqAI TTAA 3 cut(s) 459, 471, 881
SatI GCNGC 2 cut(s) 147, 342
Sau3AI GATC 2 cut(s) 622, 850
Sau96I GGNCC 2 cut(s) 378, 575
SchI GAGTC 1 cut(s) 602
SduI GDGCHC 1 cut(s) 730
SfaNI GCATC 4 cut(s) 14, 361, 493, 646
SinI GGWCC 2 cut(s) 378, 575
SmlI CTYRAG 3 cut(s) 702, 797, 880
SmoI CTYRAG 3 cut(s) 702, 797, 880
Sse9I AATT 5 cut(s) 112, 386, 397, 775, 958
SseBI AGGCCT 1 cut(s) 254
SsiI CCGC 5 cut(s) 27, 48, 90, 135, 269
SspMI CTAG 1 cut(s) 605
StuI AGGCCT 1 cut(s) 254
StyI CCWWGG 3 cut(s) 246, 264, 864
TaaI ACNGT 2 cut(s) 766, 917
TaqI TCGA 2 cut(s) 435, 682
TasI AATT 5 cut(s) 112, 386, 397, 775, 958
TatI WGTACW 2 cut(s) 77, 508
TfiI GAWTC 2 cut(s) 242, 803
Tru1I TTAA 3 cut(s) 459, 471, 881
Tru9I TTAA 3 cut(s) 459, 471, 881
TscAI CASTG 1 cut(s) 222
TseI GCWGC 2 cut(s) 146, 341
TspDTI ATGAA 6 cut(s) 317, 356, 425, 444, 768, 888
TspRI CASTG 1 cut(s) 222
Van91I CCANNNNNTGG 1 cut(s) 736
Vha464I CTTAAG 1 cut(s) 880
VpaK11BI GGWCC 2 cut(s) 378, 575
XmnI GAANNNNTTC 1 cut(s) 917
XspI CTAG 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.