Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013619.1

Orthogroup ID

OG0007658

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1117

Gene Structure 1117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013619.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 970 bp

atgaagccgggaaagaggtctggcggagtaggaggagggaggtcgtcgttttccgatagaaggctgaacgagtttcggacccggctggagtcgtccaccgagttagaccacaggtcctccgtggacgaaatcgttgaccatctccgcggcggttacccggactacgagcgactcaagcgtcaggttttcagaaggttcgtctcacaaaccctagcctctccctcgttcaagcgctcgaagcccctaccggttatgagcggctcatcggaagaagaagaagaggagctggccggaagtaagaggcggaagcgtgctcggaatgagagggaagagagactgcagcagatagaggaagcgcacgttcggaaaagtaggcagagcaatggtaatgtgccgtctccatcgtcgtcgtcgtcgtcgtcagcttcggaggacgaaggagatgaggagtctacgtcggaggacgcgatatacggcgaggaattggagccgaagtttgacttgatgaaatcgatgctgcgggaggcgtatacggatccgaaaagcggcgggaaatccaaggcggcggagcagcagaaggagaagaatgtggaaatggatattccagggcgggagaaggttaaattagtggcgggaagtagagggccgaggccggagagtgtgtcgaataaggccgagagtgaggccaagagctctatttcgagaggtgttgaggtgaagaggaatgaggggccgaagtttagtgacttgggtggaatgcagaaagtgctggaggagctgaacaaggaggttattaggccgcttcgccggtcgtggctgccgcagtggctcggagttaggccaatgtctgggattttgttgtgtggaccaccagggtgtgggaagactactttggctcatgccattgccaatgagactggcattcccttctataagatttcggccactgaagtggtctcgggagtttcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AAA Nucleolin_bd

Protein Analysis

323

Amino Acids

35.77

Weight (kDa)

9.04

Isoelectric Point (pI)

76.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37910
fragaria_vesca	FvH4_2g31390 FvH4_2g31390 FvH4_2g31390
malus_domestica	MD09G1249100.v1.1 MD17G1241700.v1.1
prunus_persica	Prupe.3G135900_v2.0.a1 Prupe.3G135900_v2.0.a1 Prupe.3G135900_v2.0.a1 Prupe.4G275000_v2.0.a1
pyrus_communis	pycom09g16600 pycom17g24480
rosa_chinensis	RchiOBHm_Chr6g0311431
rosa_laevigata	RLG00000010407
rosa_multiflora	Rmu_sc0006915.1_g000008 Rmu_sc0013619.1_g000001 Rmu_sc0015790.1_g000001 Rmu_sc0037156.1_g000001
rosa_roxburghii	Rroxscaffold_7G00157620
rosa_rugosa	Rorug06G0389000
rosa_samantha	Rh6AG503300 Rh6BG513900 Rh6DG505900
rosa_wichuraiana	Rw6G043830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	177
AccB7I	CCANNNNNTGG	2 cut(s)	848, 878
AccBSI	CCGCTC	1 cut(s)	258
AccI	GTMKAC	2 cut(s)	452, 530
AccII	CGCG	2 cut(s)	147, 467
AclWI	GGATC	2 cut(s)	530, 543
AcoI	YGGCCR	2 cut(s)	288, 942
AcuI	CTGAAG	1 cut(s)	969
AfeI	AGCGCT	1 cut(s)	233
AfiI	CCNNNNNNNGG	4 cut(s)	60, 545, 848, 878
AgeI	ACCGGT	1 cut(s)	247
AgsI	TTSAA	1 cut(s)	229
AhdI	GACNNNNNGTC	1 cut(s)	112
AjnI	CCWGG	2 cut(s)	604, 871
AjuI	GAANNNNNNNTTGG	2 cut(s)	875, 907
AleI	CACNNNNGTG	2 cut(s)	874, 950
AluBI	AGCT	4 cut(s)	286, 425, 693, 778
AluI	AGCT	4 cut(s)	286, 425, 693, 778
Alw21I	GWGCWC	2 cut(s)	316, 695
Alw26I	GTCTC	5 cut(s)	205, 328, 402, 908, 961
AlwI	GGATC	2 cut(s)	530, 543
Ama87I	CYCGRG	1 cut(s)	958
Aor51HI	AGCGCT	1 cut(s)	233
AoxI	GGCC	9 cut(s)	288, 644, 650, 672, 684, 731, 797, 839, 942
ApeKI	GCWGC	4 cut(s)	340, 517, 571, 817
AsiGI	ACCGGT	1 cut(s)	247
AspLEI	GCGC	2 cut(s)	234, 358
AspS9I	GGNCC	5 cut(s)	78, 114, 644, 731, 866
AsuC2I	CCSGG	3 cut(s)	9, 82, 158
AsuHPI	GGTGA	1 cut(s)	727
AvaI	CYCGRG	1 cut(s)	958
AvaII	GGWCC	3 cut(s)	78, 114, 866
BamHI	GGATCC	1 cut(s)	535
BanII	GRGCYC	1 cut(s)	695
BbsI	GAAGAC	1 cut(s)	890
Bbv12I	GWGCWC	2 cut(s)	316, 695
BbvI	GCAGC	4 cut(s)	352, 504, 583, 804
BccI	CCATC	2 cut(s)	147, 409
BceAI	ACGGC	2 cut(s)	379, 490
BciT130I	CCWGG	2 cut(s)	606, 873
BcnI	CCSGG	3 cut(s)	9, 82, 158
BcoDI	GTCTC	5 cut(s)	205, 328, 402, 908, 961
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	338
BfoI	RGCGCY	1 cut(s)	235
BglI	GCCNNNNNGGC	1 cut(s)	826
Bme1390I	CCNGG	5 cut(s)	9, 82, 158, 606, 873
Bme18I	GGWCC	3 cut(s)	78, 114, 866
BmeRI	GACNNNNNGTC	1 cut(s)	112
BmeT110I	CYCGRG	1 cut(s)	958
BmgT120I	GGNCC	5 cut(s)	78, 114, 644, 731, 866
BmiI	GGNNCC	4 cut(s)	80, 489, 537, 732
BmrFI	CCNGG	5 cut(s)	9, 82, 158, 606, 873
BmsI	GCATC	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	890
BpmI	CTGGAG	2 cut(s)	107, 791
BpuEI	CTTGAG	1 cut(s)	158
BpuMI	CCSGG	3 cut(s)	9, 82, 158
Bsa29I	ATCGAT	1 cut(s)	512
BsaI	GGTCTC	1 cut(s)	961
BsaJI	CCNNGG	6 cut(s)	120, 145, 558, 605, 647, 872
BsaWI	WCCGGW	1 cut(s)	247
BsaXI	ACNNNNNCTCC	8 cut(s)	101, 131, 440, 470, 479, 509, 647, 677
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 545, 848, 878
Bse118I	RCCGGY	2 cut(s)	247, 807
Bse1I	ACTGG	1 cut(s)	922
Bse3DI	GCAATG	2 cut(s)	388, 903
BseBI	CCWGG	2 cut(s)	606, 873
BseCI	ATCGAT	1 cut(s)	512
BseDI	CCNNGG	6 cut(s)	120, 145, 558, 605, 647, 872
BseLI	CCNNNNNNNGG	4 cut(s)	60, 545, 848, 878
BseMI	GCAATG	2 cut(s)	388, 903
BseNI	ACTGG	1 cut(s)	922
BseRI	GAGGAG	4 cut(s)	48, 296, 461, 788
BseXI	GCAGC	4 cut(s)	352, 504, 583, 804
Bsh1236I	CGCG	2 cut(s)	147, 467
Bsh1285I	CGRYCG	1 cut(s)	812
BshFI	GGCC	9 cut(s)	290, 646, 652, 674, 686, 733, 799, 841, 944
BshTI	ACCGGT	1 cut(s)	247
BshVI	ATCGAT	1 cut(s)	512
BsiEI	CGRYCG	1 cut(s)	812
BsiHKAI	GWGCWC	2 cut(s)	316, 695
BsiHKCI	CYCGRG	1 cut(s)	958
BsiSI	CCGG	7 cut(s)	8, 82, 158, 248, 291, 653, 808
BslI	CCNNNNNNNGG	4 cut(s)	60, 545, 848, 878
BsmAI	GTCTC	5 cut(s)	205, 328, 402, 908, 961
BsmBI	CGTCTC	2 cut(s)	205, 402
BsmI	GAATGC	2 cut(s)	762, 921
BsnI	GGCC	9 cut(s)	290, 646, 652, 674, 686, 733, 799, 841, 944
Bso31I	GGTCTC	1 cut(s)	961
BsoBI	CYCGRG	1 cut(s)	958
Bsp1286I	GDGCHC	2 cut(s)	316, 695
Bsp143I	GATC	1 cut(s)	535
BspANI	GGCC	9 cut(s)	290, 646, 652, 674, 686, 733, 799, 841, 944
BspDI	ATCGAT	1 cut(s)	512
BspFNI	CGCG	2 cut(s)	147, 467
BspLI	GGNNCC	4 cut(s)	80, 489, 537, 732
BspMAI	CTGCAG	1 cut(s)	342
BspPI	GGATC	2 cut(s)	530, 543
BspTNI	GGTCTC	1 cut(s)	961
BsrBI	CCGCTC	1 cut(s)	258
BsrDI	GCAATG	2 cut(s)	388, 903
BsrFI	RCCGGY	2 cut(s)	247, 807
BsrI	ACTGG	1 cut(s)	922
BssAI	RCCGGY	2 cut(s)	247, 807
BssECI	CCNNGG	6 cut(s)	120, 145, 558, 605, 647, 872
BssMI	GATC	1 cut(s)	535
BssNAI	GTATAC	1 cut(s)	531
BssT1I	CCWWGG	1 cut(s)	558
Bst1107I	GTATAC	1 cut(s)	531
Bst2UI	CCWGG	2 cut(s)	606, 873
Bst6I	CTCTTC	3 cut(s)	273, 324, 713
BstAPI	GCANNNNNTGC	1 cut(s)	766
BstC8I	GCNNGC	2 cut(s)	288, 312
BstDSI	CCRYGG	2 cut(s)	120, 145
BstEII	GGTNACC	1 cut(s)	152
BstFNI	CGCG	2 cut(s)	147, 467
BstH2I	RGCGCY	1 cut(s)	235
BstHHI	GCGC	2 cut(s)	234, 358
BstKTI	GATC	1 cut(s)	538
BstMAI	GTCTC	5 cut(s)	205, 328, 402, 908, 961
BstMBI	GATC	1 cut(s)	535
BstMCI	CGRYCG	1 cut(s)	812
BstMWI	GCNNNNNNNGC	5 cut(s)	175, 238, 766, 775, 826
BstNI	CCWGG	2 cut(s)	606, 873
BstPI	GGTNACC	1 cut(s)	152
BstSCI	CCNGG	5 cut(s)	7, 80, 156, 604, 871
BstSFI	CTRYAG	1 cut(s)	338
BstUI	CGCG	2 cut(s)	147, 467
BstV1I	GCAGC	4 cut(s)	352, 504, 583, 804
BstV2I	GAAGAC	1 cut(s)	890
BstX2I	RGATCY	1 cut(s)	535
BstXI	CCANNNNNNTGG	1 cut(s)	952
BstYI	RGATCY	1 cut(s)	535
BstZ17I	GTATAC	1 cut(s)	531
Bsu15I	ATCGAT	1 cut(s)	512
BsuRI	GGCC	9 cut(s)	290, 646, 652, 674, 686, 733, 799, 841, 944
BsuTUI	ATCGAT	1 cut(s)	512
BtgI	CCRYGG	2 cut(s)	120, 145
BtsI	GCAGTG	1 cut(s)	830
BtsIMutI	CAGTG	2 cut(s)	830, 945
Cac8I	GCNNGC	2 cut(s)	288, 312
CfoI	GCGC	2 cut(s)	234, 358
Cfr10I	RCCGGY	2 cut(s)	247, 807
Cfr13I	GGNCC	5 cut(s)	78, 114, 644, 731, 866
Cfr42I	CCGCGG	1 cut(s)	148
ClaI	ATCGAT	1 cut(s)	512
CseI	GACGC	2 cut(s)	167, 473
CspAI	ACCGGT	1 cut(s)	247
CviAII	CATG	1 cut(s)	899
DpnI	GATC	1 cut(s)	537
DpnII	GATC	1 cut(s)	535
DrdI	GACNNNNNNGTC	1 cut(s)	177
DriI	GACNNNNNGTC	1 cut(s)	112
DseDI	GACNNNNNNGTC	1 cut(s)	177
EaeI	YGGCCR	2 cut(s)	288, 942
Eam1104I	CTCTTC	3 cut(s)	273, 324, 713
Eam1105I	GACNNNNNGTC	1 cut(s)	112
EarI	CTCTTC	3 cut(s)	273, 324, 713
EciI	GGCGGA	3 cut(s)	39, 319, 581
Ecl136II	GAGCTC	1 cut(s)	693
Eco130I	CCWWGG	1 cut(s)	558
Eco24I	GRGCYC	1 cut(s)	695
Eco31I	GGTCTC	1 cut(s)	961
Eco47I	GGWCC	3 cut(s)	78, 114, 866
Eco47III	AGCGCT	1 cut(s)	233
Eco53kI	GAGCTC	1 cut(s)	693
Eco57I	CTGAAG	1 cut(s)	969
Eco88I	CYCGRG	1 cut(s)	958
Eco91I	GGTNACC	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	693
EcoO109I	RGGNCCY	1 cut(s)	114
EcoO65I	GGTNACC	1 cut(s)	152
EcoRII	CCWGG	2 cut(s)	604, 871
EcoT14I	CCWWGG	1 cut(s)	558
EcoT38I	GRGCYC	1 cut(s)	695
ErhI	CCWWGG	1 cut(s)	558
Esp3I	CGTCTC	2 cut(s)	205, 402
FaeI	CATG	1 cut(s)	902
FaiI	YATR	5 cut(s)	254, 472, 531, 900, 933
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FatI	CATG	1 cut(s)	898
FauI	CCCGC	4 cut(s)	513, 542, 603, 625
FblI	GTMKAC	2 cut(s)	452, 530
FriOI	GRGCYC	1 cut(s)	695
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	2 cut(s)	233, 357
GsuI	CTGGAG	2 cut(s)	107, 791
HaeII	RGCGCY	1 cut(s)	235
HaeIII	GGCC	9 cut(s)	290, 646, 652, 674, 686, 733, 799, 841, 944
HapII	CCGG	7 cut(s)	8, 82, 158, 248, 291, 653, 808
HgaI	GACGC	2 cut(s)	167, 473
HhaI	GCGC	2 cut(s)	234, 358
Hin1II	CATG	1 cut(s)	902
Hin6I	GCGC	2 cut(s)	232, 356
HinP1I	GCGC	2 cut(s)	232, 356
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	3 cut(s)	89, 171, 449
HpaII	CCGG	7 cut(s)	8, 82, 158, 248, 291, 653, 808
HphI	GGTGA	1 cut(s)	727
Hpy166II	GTNNAC	6 cut(s)	96, 124, 136, 453, 531, 866
Hpy188III	TCNNGA	2 cut(s)	702, 960
Hpy8I	GTNNAC	6 cut(s)	96, 124, 136, 453, 531, 866
Hpy99I	CGWCG	7 cut(s)	49, 409, 412, 415, 418, 421, 460
HpyAV	CCTTC	6 cut(s)	54, 186, 431, 571, 610, 937
HpyCH4IV	ACGT	2 cut(s)	360, 455
HpyCH4V	TGCA	2 cut(s)	340, 760
HpyF10VI	GCNNNNNNNGC	5 cut(s)	175, 238, 766, 775, 826
HpySE526I	ACGT	2 cut(s)	360, 455
Hsp92II	CATG	1 cut(s)	902
HspAI	GCGC	2 cut(s)	232, 356
KspI	CCGCGG	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	535
LmnI	GCTCC	4 cut(s)	283, 487, 568, 775
Lsp1109I	GCAGC	4 cut(s)	352, 504, 583, 804
LweI	GCATC	1 cut(s)	504
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	2 cut(s)	360, 455
MaeIII	GTNAC	2 cut(s)	152, 743
MalI	GATC	1 cut(s)	537
MbiI	CCGCTC	1 cut(s)	258
MboI	GATC	1 cut(s)	535
MboII	GAAGA	8 cut(s)	281, 284, 287, 290, 341, 595, 730, 895
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	2 cut(s)	316, 695
MluCI	AATT	2 cut(s)	482, 623
MlyI	GAGTC	3 cut(s)	98, 165, 458
MmeI	TCCRAC	1 cut(s)	438
MseI	TTAA	1 cut(s)	621
MslI	CAYNNNNRTG	2 cut(s)	874, 950
MspA1I	CMGCKG	1 cut(s)	147
MspI	CCGG	7 cut(s)	8, 82, 158, 248, 291, 653, 808
MspR9I	CCNGG	5 cut(s)	9, 82, 158, 606, 873
Mva1269I	GAATGC	2 cut(s)	762, 921
MvaI	CCWGG	2 cut(s)	606, 873
MvnI	CGCG	2 cut(s)	147, 467
MwoI	GCNNNNNNNGC	5 cut(s)	175, 238, 766, 775, 826
NciI	CCSGG	3 cut(s)	9, 82, 158
NdeII	GATC	1 cut(s)	535
NlaIII	CATG	1 cut(s)	902
NlaIV	GGNNCC	4 cut(s)	80, 489, 537, 732
NmeAIII	GCCGAG	2 cut(s)	672, 700
NmuCI	GTSAC	1 cut(s)	743
OliI	CACNNNNGTG	2 cut(s)	874, 950
PcsI	WCGNNNNNNNCGW	4 cut(s)	410, 413, 416, 464
PctI	GAATGC	2 cut(s)	762, 921
PflMI	CCANNNNNTGG	2 cut(s)	848, 878
PinAI	ACCGGT	1 cut(s)	247
PleI	GAGTC	3 cut(s)	97, 165, 457
PpsI	GAGTC	3 cut(s)	97, 165, 457
PpuMI	RGGWCCY	1 cut(s)	114
Psp124BI	GAGCTC	1 cut(s)	695
Psp5II	RGGWCCY	1 cut(s)	114
Psp6I	CCWGG	2 cut(s)	604, 871
PspEI	GGTNACC	1 cut(s)	152
PspGI	CCWGG	2 cut(s)	604, 871
PspN4I	GGNNCC	4 cut(s)	80, 489, 537, 732
PspPI	GGNCC	5 cut(s)	78, 114, 644, 731, 866
PspPPI	RGGWCCY	1 cut(s)	114
PstI	CTGCAG	1 cut(s)	342
PsuI	RGATCY	1 cut(s)	535
RseI	CAYNNNNRTG	2 cut(s)	874, 950
SacI	GAGCTC	1 cut(s)	695
SacII	CCGCGG	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	621
Sau3AI	GATC	1 cut(s)	535
Sau96I	GGNCC	5 cut(s)	78, 114, 644, 731, 866
SchI	GAGTC	3 cut(s)	98, 165, 458
ScrFI	CCNGG	5 cut(s)	9, 82, 158, 606, 873
SduI	GDGCHC	2 cut(s)	316, 695
SfaNI	GCATC	1 cut(s)	504
SfcI	CTRYAG	1 cut(s)	338
Sfr303I	CCGCGG	1 cut(s)	148
SgrBI	CCGCGG	1 cut(s)	148
SinI	GGWCC	3 cut(s)	78, 114, 866
SmiMI	CAYNNNNRTG	2 cut(s)	874, 950
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	2 cut(s)	482, 623
SspMI	CTAG	1 cut(s)	212
SstI	GAGCTC	1 cut(s)	695
StyD4I	CCNGG	5 cut(s)	7, 80, 156, 604, 871
StyI	CCWWGG	1 cut(s)	558
TaiI	ACGT	2 cut(s)	363, 458
TaqI	TCGA	4 cut(s)	236, 512, 665, 701
TasI	AATT	2 cut(s)	482, 623
TauI	GCSGC	6 cut(s)	150, 261, 549, 566, 802, 823
Tru1I	TTAA	1 cut(s)	621
Tru9I	TTAA	1 cut(s)	621
TscAI	CASTG	2 cut(s)	830, 952
TseFI	GTSAC	1 cut(s)	743
TseI	GCWGC	4 cut(s)	340, 517, 571, 817
Tsp45I	GTSAC	1 cut(s)	743
TspDTI	ATGAA	2 cut(s)	17, 521
TspGWI	ACGGA	2 cut(s)	109, 548
TspRI	CASTG	2 cut(s)	830, 952
Van91I	CCANNNNNTGG	2 cut(s)	848, 878
VpaK11BI	GGWCC	3 cut(s)	78, 114, 866
XmiI	GTMKAC	2 cut(s)	452, 530
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.