Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037156.1

Orthogroup ID

OG0007658

Physical Location & Seq

Genomic Coordinates Forward (+)

23 .. 514

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037156.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgaaatcgatgctgcgggaggcgtatacggatccgaaaagcggcgggaaatccaaggcagcggagcagcagaaggagaagaatgtggaaatggatattccagggcgggagaaggttaaattagtggcgggaagtagagggccgaggcccgagagtgtgtcgaataaggccgagagtgaggccaagagctctatttcgagaggtgttgaggtgaagaggaatgaggggccgaagtttagtgacttgggtggaatgcagaaagtgctggaggagctgaacaaggaggttattaggccgcttcgccggtcgtggctgccgcagtggctcggagttaggccaatgtctgggattttgttgtgtggaccaccagggtgtgggaagactacgttggctcatgccattgccaatgagactggcattcccttctataagatttcggccactgaagtggtctcaggagtttcaggtatggctcttttcctttcaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AAA Nucleolin_bd

Protein Analysis

163

Amino Acids

17.64

Weight (kDa)

9.63

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37910
fragaria_vesca	FvH4_2g31390 FvH4_2g31390 FvH4_2g31390
malus_domestica	MD09G1249100.v1.1 MD17G1241700.v1.1
prunus_persica	Prupe.3G135900_v2.0.a1 Prupe.3G135900_v2.0.a1 Prupe.3G135900_v2.0.a1 Prupe.4G275000_v2.0.a1
pyrus_communis	pycom09g16600 pycom17g24480
rosa_chinensis	RchiOBHm_Chr6g0311431
rosa_laevigata	RLG00000010407
rosa_multiflora	Rmu_sc0006915.1_g000008 Rmu_sc0013619.1_g000001 Rmu_sc0015790.1_g000001 Rmu_sc0037156.1_g000001
rosa_roxburghii	Rroxscaffold_7G00157620
rosa_rugosa	Rorug06G0389000
rosa_samantha	Rh6AG503300 Rh6BG513900 Rh6DG505900
rosa_wichuraiana	Rw6G043830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	344, 374
AccI	GTMKAC	1 cut(s)	26
AciI	CCGC	8 cut(s)	16, 42, 45, 62, 106, 128, 296, 317
AclWI	GGATC	2 cut(s)	26, 39
AcoI	YGGCCR	1 cut(s)	438
AcuI	CTGAAG	1 cut(s)	465
AfiI	CCNNNNNNNGG	3 cut(s)	41, 344, 374
AgsI	TTSAA	1 cut(s)	486
AjnI	CCWGG	2 cut(s)	100, 367
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
AleI	CACNNNNGTG	2 cut(s)	370, 446
AluBI	AGCT	2 cut(s)	189, 274
AluI	AGCT	2 cut(s)	189, 274
Alw21I	GWGCWC	1 cut(s)	191
Alw26I	GTCTC	2 cut(s)	404, 457
AlwI	GGATC	2 cut(s)	26, 39
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	8 cut(s)	140, 146, 168, 180, 227, 293, 335, 438
ApeKI	GCWGC	4 cut(s)	13, 59, 67, 313
AspS9I	GGNCC	4 cut(s)	140, 147, 227, 362
AsuHPI	GGTGA	1 cut(s)	223
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	362
BamHI	GGATCC	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	386
Bbv12I	GWGCWC	1 cut(s)	191
BbvI	GCAGC	3 cut(s)	71, 79, 300
BciT130I	CCWGG	2 cut(s)	102, 369
BcoDI	GTCTC	2 cut(s)	404, 457
BglI	GCCNNNNNGGC	1 cut(s)	322
BisI	GCNGC	7 cut(s)	14, 43, 60, 68, 296, 314, 317
BlsI	GCNGC	7 cut(s)	15, 44, 61, 69, 297, 315, 318
Bme1390I	CCNGG	2 cut(s)	102, 369
Bme18I	GGWCC	1 cut(s)	362
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	4 cut(s)	140, 147, 227, 362
BmiI	GGNNCC	2 cut(s)	33, 228
BmrFI	CCNGG	2 cut(s)	102, 369
BpiI	GAAGAC	1 cut(s)	386
BpmI	CTGGAG	1 cut(s)	287
Bsa29I	ATCGAT	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	457
BsaJI	CCNNGG	4 cut(s)	54, 101, 143, 368
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 344, 374
Bse118I	RCCGGY	1 cut(s)	303
Bse1I	ACTGG	1 cut(s)	418
Bse3DI	GCAATG	1 cut(s)	399
BseBI	CCWGG	2 cut(s)	102, 369
BseCI	ATCGAT	1 cut(s)	8
BseDI	CCNNGG	4 cut(s)	54, 101, 143, 368
BseLI	CCNNNNNNNGG	3 cut(s)	41, 344, 374
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	1 cut(s)	468
BseNI	ACTGG	1 cut(s)	418
BseRI	GAGGAG	1 cut(s)	284
BseXI	GCAGC	3 cut(s)	71, 79, 300
Bsh1285I	CGRYCG	1 cut(s)	308
BshFI	GGCC	8 cut(s)	142, 148, 170, 182, 229, 295, 337, 440
BshVI	ATCGAT	1 cut(s)	8
BsiEI	CGRYCG	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	191
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	304
BslI	CCNNNNNNNGG	3 cut(s)	41, 344, 374
BsmAI	GTCTC	2 cut(s)	404, 457
BsmI	GAATGC	2 cut(s)	258, 417
BsnI	GGCC	8 cut(s)	142, 148, 170, 182, 229, 295, 337, 440
Bso31I	GGTCTC	1 cut(s)	457
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	8 cut(s)	16, 42, 45, 62, 106, 128, 296, 317
BspANI	GGCC	8 cut(s)	142, 148, 170, 182, 229, 295, 337, 440
BspCNI	CTCAG	1 cut(s)	467
BspDI	ATCGAT	1 cut(s)	8
BspLI	GGNNCC	2 cut(s)	33, 228
BspPI	GGATC	2 cut(s)	26, 39
BspTNI	GGTCTC	1 cut(s)	457
BsrDI	GCAATG	1 cut(s)	399
BsrFI	RCCGGY	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	418
BssAI	RCCGGY	1 cut(s)	303
BssECI	CCNNGG	4 cut(s)	54, 101, 143, 368
BssMI	GATC	1 cut(s)	31
BssNAI	GTATAC	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	54
Bst1107I	GTATAC	1 cut(s)	27
Bst2UI	CCWGG	2 cut(s)	102, 369
Bst6I	CTCTTC	1 cut(s)	209
BstAPI	GCANNNNNTGC	1 cut(s)	262
BstDEI	CTNAG	1 cut(s)	454
BstKTI	GATC	1 cut(s)	34
BstMAI	GTCTC	2 cut(s)	404, 457
BstMBI	GATC	1 cut(s)	31
BstMCI	CGRYCG	1 cut(s)	308
BstMWI	GCNNNNNNNGC	3 cut(s)	262, 271, 322
BstNI	CCWGG	2 cut(s)	102, 369
BstSCI	CCNGG	2 cut(s)	100, 367
BstV1I	GCAGC	3 cut(s)	71, 79, 300
BstV2I	GAAGAC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	31
BstXI	CCANNNNNNTGG	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	31
BstZ17I	GTATAC	1 cut(s)	27
Bsu15I	ATCGAT	1 cut(s)	8
BsuRI	GGCC	8 cut(s)	142, 148, 170, 182, 229, 295, 337, 440
BsuTUI	ATCGAT	1 cut(s)	8
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	2 cut(s)	326, 441
Cfr10I	RCCGGY	1 cut(s)	303
Cfr13I	GGNCC	4 cut(s)	140, 147, 227, 362
ClaI	ATCGAT	1 cut(s)	8
CviAII	CATG	1 cut(s)	395
DdeI	CTNAG	1 cut(s)	454
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	438
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
Ecl136II	GAGCTC	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	191
Eco31I	GGTCTC	1 cut(s)	457
Eco47I	GGWCC	1 cut(s)	362
Eco53kI	GAGCTC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	465
Eco88I	CYCGRG	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	189
EcoRII	CCWGG	2 cut(s)	100, 367
EcoT14I	CCWWGG	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	191
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	1 cut(s)	398
FaiI	YATR	4 cut(s)	27, 396, 429, 470
FatI	CATG	1 cut(s)	394
FauI	CCCGC	4 cut(s)	9, 38, 99, 121
FblI	GTMKAC	1 cut(s)	26
Fnu4HI	GCNGC	7 cut(s)	14, 43, 60, 68, 296, 314, 317
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	7 cut(s)	14, 43, 60, 68, 296, 314, 317
GluI	GCNGC	7 cut(s)	14, 43, 60, 68, 296, 314, 317
GsuI	CTGGAG	1 cut(s)	287
HaeIII	GGCC	8 cut(s)	142, 148, 170, 182, 229, 295, 337, 440
HapII	CCGG	1 cut(s)	304
Hin1II	CATG	1 cut(s)	398
HpaII	CCGG	1 cut(s)	304
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	2 cut(s)	27, 362
Hpy188I	TCNGA	2 cut(s)	36, 329
Hpy188III	TCNNGA	2 cut(s)	198, 456
Hpy8I	GTNNAC	2 cut(s)	27, 362
HpyAV	CCTTC	3 cut(s)	67, 106, 433
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	1 cut(s)	256
HpyF10VI	GCNNNNNNNGC	3 cut(s)	262, 271, 322
HpyF3I	CTNAG	1 cut(s)	454
HpySE526I	ACGT	1 cut(s)	386
Hsp92II	CATG	1 cut(s)	398
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	2 cut(s)	64, 271
Lsp1109I	GCAGC	3 cut(s)	71, 79, 300
MaeII	ACGT	1 cut(s)	386
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	3 cut(s)	91, 226, 391
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	2 cut(s)	119, 486
MseI	TTAA	1 cut(s)	117
MslI	CAYNNNNRTG	2 cut(s)	370, 446
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	1 cut(s)	304
MspR9I	CCNGG	2 cut(s)	102, 369
Mva1269I	GAATGC	2 cut(s)	258, 417
MvaI	CCWGG	2 cut(s)	102, 369
MwoI	GCNNNNNNNGC	3 cut(s)	262, 271, 322
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	1 cut(s)	398
NlaIV	GGNNCC	2 cut(s)	33, 228
NmeAIII	GCCGAG	2 cut(s)	168, 196
NmuCI	GTSAC	1 cut(s)	239
OliI	CACNNNNGTG	2 cut(s)	370, 446
PctI	GAATGC	2 cut(s)	258, 417
PflMI	CCANNNNNTGG	2 cut(s)	344, 374
PkrI	GCNGC	7 cut(s)	15, 44, 61, 69, 297, 315, 318
Psp124BI	GAGCTC	1 cut(s)	191
Psp6I	CCWGG	2 cut(s)	100, 367
PspGI	CCWGG	2 cut(s)	100, 367
PspN4I	GGNNCC	2 cut(s)	33, 228
PspPI	GGNCC	4 cut(s)	140, 147, 227, 362
PsuI	RGATCY	1 cut(s)	31
RseI	CAYNNNNRTG	2 cut(s)	370, 446
SacI	GAGCTC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	7 cut(s)	14, 43, 60, 68, 296, 314, 317
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	4 cut(s)	140, 147, 227, 362
ScrFI	CCNGG	2 cut(s)	102, 369
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	8 cut(s)	117, 191, 205, 213, 276, 288, 389, 469
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	2 cut(s)	370, 446
Sse9I	AATT	2 cut(s)	119, 486
SsiI	CCGC	8 cut(s)	16, 42, 45, 62, 106, 128, 296, 317
SstI	GAGCTC	1 cut(s)	191
StyD4I	CCNGG	2 cut(s)	100, 367
StyI	CCWWGG	1 cut(s)	54
TaiI	ACGT	1 cut(s)	389
TaqI	TCGA	3 cut(s)	8, 161, 197
TasI	AATT	2 cut(s)	119, 486
TauI	GCSGC	3 cut(s)	45, 298, 319
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	2 cut(s)	326, 448
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	4 cut(s)	13, 59, 67, 313
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	2 cut(s)	326, 448
Van91I	CCANNNNNTGG	2 cut(s)	344, 374
VpaK11BI	GGWCC	1 cut(s)	362
XmiI	GTMKAC	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.