FvH4_2g31390

Cell division control protein 48 homolog C-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007658
Physical Location & Seq
Forward (+)
24064214 .. 24068661
4448 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g31390.t1

Sequence Viewer

Length: 2460 bp
ATGAAGCCGGGGAAGAGGTCTGGCGGAGGAGGAGGGAGGTCGTCGTCGTTCTCCGATAGACGTATGAACGAGTTCCGGAATCGTCTGGAGGCTTCGACCGAGTTAGACCACCGCTCCTCCGTCGACGAAATCGTGGACTATCTCCGCGGCGGTTACCCGGACTACGAGCGGCTCAAGCGTCAGGTCTTCAGAAGATTCGTCACGCAAACCCTAGCCTCTCCCTCGTTCAAGAGGTCCAAACCGCTACCGGTTATGAGCGGCTCGTCGGAGGAAGAAGAAGAGGAGGAGCTCGCCGGAAGTAAGAGGCGGAAGCGTGCGAGGAATGAGAAGGAAGAGAGGTTGCAGCAGATAGAGGAGGCGCATATCCGGAAAATCCGGCAGAGCAACGGTCACGTGCCGTCGTCATCGTCGTCGTCGGCGGCGGCGTCTGAGGAAGAAGATGAGGAGTCTACGTCGGAGGACGCGATATACGGCGAGGAGCTGGAGCCGAAGTTTGATTTGATGAAATCGATGCTGCGGGAGTCGTATACGGATCCGAAGCGCGGCGGGAAATCCGCGGCGGCGGAGCAGAAGAAGGAGAAGAATGTGGAAATGGATATTCCGGGGCGGGAGAAGGTTAGATTAGTGGCCGGAAGTAGGGGGCCGAGGCCGGAGACGGTGTCGAATAAGGCGGAGAGTGAGGCCAAGAGCTCTGTTTCGAGAGGTGTGGAGGTGAAGAGGAATGAGGGGCCGAAGTTTTGTGATTTAGGTGGAATGCAGAAAGTGCTGGAGGAGCTGAACAAGGAGGTTATTAGGCCTCTGCGCCGGTCGTGGCTGCCGCAGTGGCTCGGAGTTAGGCCAATGTCTGGGATTCTGTTGTGTGGACCGCCGGGGTGTGGGAAGACCACATTGGCTCATGCCATTGCCAATGAGACTGGCATTCCCTTTTATAAAATTTCGGCCACTGAAGTTGTCTCTGGTGTTTCAGGTGCATCTGAAGAAAATATACGAGATTTGTTTTCAAAAGCATATAGAACTGCCCCTTCAATTGTGTTCATTGATGAAATTGATGCAATTGCTTCGAAAAGAGATAATATGCAAAGGGAAATGGAGAAGCGAATCGTTACACAACTGATGACTTGCATGGATCAATCTCATAGACCAGTACAGGCGGAAGATGCAAATTCTGACTCACAAAGTTCAGATCAGGCGTCTAGCTATGTTCTTGTTATTGGAGCCACGAATAGGCCTGATGCTGTCGACCCTGCTTTAAGGAGGCCTGGGCGATTTGGTCGTGAAATTCTTTTGGGTGTTCCGGATGAAAATTCAAGGCTTGAGATTCTTTCTGTGCTTACGCGCAAGCTAAAACTTGAAGGTTCTTTTGATCTTCTAAAGATTGCTAGGTCCACACCAGGGTATGTTGGGGCTGATTTGGTGGAGCTGGCTGACAGGGCTGGTAACATTGCCATGAACAGGATTTTTGATGAAATTGATTCAACCATTGAGGAAGGCAAGGAAGATTTGTGCAGGCAACCTGAAGAAATGGAAAAGTATGCCATCAGTATGGCTGACTTTGAGGAAGCAGTAAAAGTGGTTCAACCTTCGTCAAAAAGAGAAGGATTCTCGGCAATTCCTAATGTGAAATGGGAAAATGTTGGTGGGCTAGATCTTTTGAGGAAGGAATTCGACCGTTATATAGTCAGGCGTATCAGACATCCTGAGAACTATGAGAAATTCGGAGTAAATTCAGAAACTGGTTTCTTGCTTTATGGGCCTCCTGGATGCGGAAAAACACTAATAGCAAAGGCTGTTGCTAATGAAGCAGGAGCCAATTTTATTTATATAAAGGGCCCTGAACTTCTGAATAAATATGTCGGAGAAAGTGAACTGGCAGTTCGGACATTATTTACTCGTGCAAGGACATGCTCACCATGCATACTTTTCTTTGATGAGGTGGATGCTTTGACAACAAGGCGGGGAAAAGAAGGGGGGTGGGTTGTTGAGCGGTTATTGAACCAGTTACTTATAGAGTTAGATGGTGCAGACCAGCGGCGGGGTGTATTTGTTGTTGGTGCCACTAATAGACCTGATGTCATGGACCGTGCCTTTTTACGGCCGGGTAGGTTTGGTAAACTTATTTATGTAGCCCCACCCACCACAGATGAGCGTGGTTTGATCTTGAAAGCTATTGGAAGGAAGTACCCTATTGATGCCAGTGTAGATCTGGGTGAGATTGGAAAATGGAAGGCATGTGAAAATTTTAGCGGAGCTGATCTTGCTGCCCTGATGGATGAAGCTGCTATGGCTGCTCTTGAAGAGAAAGAGACATCAGCCGAGAGTTCAGATGCATCGTCGTGGACGATCAAAGAAGCTCACTTTCAGCCAGCACTGGCCAAAATCATACCATCTATAACAGAAACGCAACTGCTATACTATGAGATATTTGGAGAAAGCCTCAAGGGTCCAAGAAGTGAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
AAA Nucleolin_bd

Protein Analysis

820

Amino Acids

91.08

Weight (kDa)

5.78

Isoelectric Point (pI)

55.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RuvB_N PF05496 281 - 359 1.3e-06 Holliday junction DNA helicase RuvB P-loop domain
AAA PF00004 284 - 430 4.1e-41 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 454 - 492 3.1e-09 AAA+ lid domain
AAA PF00004 581 - 708 1.1e-41 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 732 - 775 3.1e-09 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 930
AccB1I GGYRCC 1 cut(s) 2051
AccB7I CCANNNNNTGG 1 cut(s) 845
AccBSI CCGCTC 4 cut(s) 114, 169, 258, 1984
AccI GTMKAC 4 cut(s) 123, 449, 527, 1239
AccII CGCG 5 cut(s) 147, 464, 543, 557, 1336
AccIII TCCGGA 3 cut(s) 75, 366, 1294
AclWI GGATC 3 cut(s) 527, 540, 1134
AcoI YGGCCR 4 cut(s) 627, 939, 2093, 2370
AcsI RAATTY 8 cut(s) 933, 1162, 1278, 1303, 1661, 1712, 1723, 2236
AcuI CTGAAG 4 cut(s) 172, 966, 996, 1536
AcvI CACGTG 1 cut(s) 394
AcyI GRCGYC 2 cut(s) 425, 1190
AfaI GTAC 2 cut(s) 1146, 2180
AgeI ACCGGT 1 cut(s) 247
AhdI GACNNNNNGTC 1 cut(s) 2069
AjnI CCWGG 3 cut(s) 1258, 1390, 1756
AjuI GAANNNNNNNTTGG 2 cut(s) 872, 904
Alw21I GWGCWC 2 cut(s) 291, 692
Alw26I GTCTC 4 cut(s) 647, 905, 958, 2297
AlwI GGATC 3 cut(s) 527, 540, 1134
AlwNI CAGNNNCTG 1 cut(s) 1733
Aor13HI TCCGGA 3 cut(s) 75, 366, 1294
ApaI GGGCCC 1 cut(s) 1832
ApeKI GCWGC 6 cut(s) 343, 514, 814, 2258, 2276, 2285
ApoI RAATTY 8 cut(s) 933, 1162, 1278, 1303, 1661, 1712, 1723, 2236
AsiGI ACCGGT 1 cut(s) 247
Asp700I GAANNNNTTC 2 cut(s) 71, 1661
AspLEI GCGC 4 cut(s) 361, 543, 804, 1338
AsuC2I CCSGG 5 cut(s) 9, 158, 603, 870, 2097
AsuHPI GGTGA 3 cut(s) 724, 1899, 2219
AsuII TTCGAA 1 cut(s) 1061
AvaII GGWCC 5 cut(s) 234, 863, 1383, 2077, 2441
BaeGI GKGCMC 1 cut(s) 1832
BalI TGGCCA 1 cut(s) 2372
BamHI GGATCC 1 cut(s) 532
BanI GGYRCC 1 cut(s) 2051
BanII GRGCYC 3 cut(s) 291, 692, 1832
BarI GAAGNNNNNNTAC 2 cut(s) 969, 1001
BauI CACGAG 1 cut(s) 1890
BbrPI CACGTG 1 cut(s) 394
BbsI GAAGAC 2 cut(s) 178, 887
Bbv12I GWGCWC 2 cut(s) 291, 692
BbvI GCAGC 6 cut(s) 355, 501, 801, 2245, 2263, 2272
BccI CCATC 4 cut(s) 1544, 2009, 2260, 2392
BceAI ACGGC 3 cut(s) 382, 487, 2108
BcgI CGANNNNNNTGC 2 cut(s) 1041, 1075
BciT130I CCWGG 3 cut(s) 1260, 1392, 1758
BcnI CCSGG 5 cut(s) 9, 158, 603, 870, 2097
BcoDI GTCTC 4 cut(s) 647, 905, 958, 2297
BfaI CTAG 4 cut(s) 212, 1194, 1380, 1643
BglI GCCNNNNNGGC 1 cut(s) 823
BglII AGATCT 2 cut(s) 1645, 2200
Bme1390I CCNGG 8 cut(s) 9, 158, 603, 870, 1260, 1392, 1758, 2097
Bme18I GGWCC 5 cut(s) 234, 863, 1383, 2077, 2441
BmeRI GACNNNNNGTC 1 cut(s) 2069
BmiI GGNNCC 9 cut(s) 486, 534, 642, 729, 1216, 1807, 1830, 2053, 2442
BmrFI CCNGG 8 cut(s) 9, 158, 603, 870, 1260, 1392, 1758, 2097
BpiI GAAGAC 2 cut(s) 178, 887
BplI GAGNNNNNCTC 2 cut(s) 2418, 2450
BpmI CTGGAG 3 cut(s) 107, 503, 788
Bpu14I TTCGAA 1 cut(s) 1061
BpuEI CTTGAG 3 cut(s) 158, 1334, 2420
BpuMI CCSGG 5 cut(s) 9, 158, 603, 870, 2097
Bsa29I ATCGAT 1 cut(s) 509
BsaAI YACGTR 1 cut(s) 394
BsaHI GRCGYC 2 cut(s) 425, 1190
BsaJI CCNNGG 8 cut(s) 8, 145, 555, 602, 644, 869, 1259, 1391
BsaWI WCCGGW 4 cut(s) 75, 247, 366, 1294
Bse118I RCCGGY 2 cut(s) 247, 804
Bse1I ACTGG 7 cut(s) 919, 1142, 1738, 1872, 1996, 2193, 2373
Bse3DI GCAATG 2 cut(s) 900, 1440
BseAI TCCGGA 3 cut(s) 75, 366, 1294
BseBI CCWGG 3 cut(s) 1260, 1392, 1758
BseCI ATCGAT 1 cut(s) 509
BseDI CCNNGG 8 cut(s) 8, 145, 555, 602, 644, 869, 1259, 1391
BseGI GGATG 5 cut(s) 1303, 1693, 1766, 1942, 2275
BseMI GCAATG 2 cut(s) 900, 1440
BseMII CTCAG 2 cut(s) 420, 1689
BseNI ACTGG 7 cut(s) 919, 1142, 1738, 1872, 1996, 2193, 2373
BseRI GAGGAG 9 cut(s) 42, 45, 106, 296, 299, 368, 458, 491, 785
BseSI GKGCMC 1 cut(s) 1832
BseX3I CGGCCG 1 cut(s) 2093
BseXI GCAGC 6 cut(s) 355, 501, 801, 2245, 2263, 2272
BsgI GTGCAG 2 cut(s) 1525, 2040
Bsh1236I CGCG 5 cut(s) 147, 464, 543, 557, 1336
Bsh1285I CGRYCG 4 cut(s) 99, 809, 1669, 2096
BshNI GGYRCC 1 cut(s) 2051
BshTI ACCGGT 1 cut(s) 247
BshVI ATCGAT 1 cut(s) 509
BsiEI CGRYCG 4 cut(s) 99, 809, 1669, 2096
BsiHKAI GWGCWC 2 cut(s) 291, 692
BsmAI GTCTC 4 cut(s) 647, 905, 958, 2297
BsmBI CGTCTC 1 cut(s) 647
BsmI GAATGC 2 cut(s) 759, 918
Bsp119I TTCGAA 1 cut(s) 1061
Bsp120I GGGCCC 1 cut(s) 1828
Bsp1286I GDGCHC 3 cut(s) 291, 692, 1832
Bsp13I TCCGGA 3 cut(s) 75, 366, 1294
Bsp143I GATC 9 cut(s) 532, 1126, 1183, 1363, 1645, 2154, 2200, 2251, 2340
BspCNI CTCAG 2 cut(s) 421, 1690
BspDI ATCGAT 1 cut(s) 509
BspEI TCCGGA 3 cut(s) 75, 366, 1294
BspFNI CGCG 5 cut(s) 147, 464, 543, 557, 1336
BspLI GGNNCC 9 cut(s) 486, 534, 642, 729, 1216, 1807, 1830, 2053, 2442
BspPI GGATC 3 cut(s) 527, 540, 1134
BspT104I TTCGAA 1 cut(s) 1061
BspT107I GGYRCC 1 cut(s) 2051
BsrBI CCGCTC 4 cut(s) 114, 169, 258, 1984
BsrDI GCAATG 2 cut(s) 900, 1440
BsrFI RCCGGY 2 cut(s) 247, 804
BsrI ACTGG 7 cut(s) 919, 1142, 1738, 1872, 1996, 2193, 2373
BssAI RCCGGY 2 cut(s) 247, 804
BssECI CCNNGG 8 cut(s) 8, 145, 555, 602, 644, 869, 1259, 1391
BssMI GATC 9 cut(s) 532, 1126, 1183, 1363, 1645, 2154, 2200, 2251, 2340
BssNAI GTATAC 1 cut(s) 528
BssNI GRCGYC 2 cut(s) 425, 1190
BssSI CACGAG 1 cut(s) 1890
Bst1107I GTATAC 1 cut(s) 528
Bst2BI CACGAG 1 cut(s) 1890
Bst2UI CCWGG 3 cut(s) 1260, 1392, 1758
Bst4CI ACNGT 4 cut(s) 389, 658, 1670, 2081
Bst6I CTCTTC 5 cut(s) 8, 273, 327, 710, 2289
BstACI GRCGYC 2 cut(s) 425, 1190
BstAPI GCANNNNNTGC 1 cut(s) 763
BstBAI YACGTR 1 cut(s) 394
BstBI TTCGAA 1 cut(s) 1061
BstC8I GCNNGC 6 cut(s) 291, 315, 1340, 1422, 1508, 2364
BstDEI CTNAG 2 cut(s) 429, 1698
BstDSI CCRYGG 2 cut(s) 145, 555
BstEII GGTNACC 1 cut(s) 152
BstF5I GGATG 5 cut(s) 1303, 1693, 1766, 1942, 2275
BstFNI CGCG 5 cut(s) 147, 464, 543, 557, 1336
BstHHI GCGC 4 cut(s) 361, 543, 804, 1338
BstKTI GATC 9 cut(s) 535, 1129, 1186, 1366, 1648, 2157, 2203, 2254, 2343
BstMAI GTCTC 4 cut(s) 647, 905, 958, 2297
BstMBI GATC 9 cut(s) 532, 1126, 1183, 1363, 1645, 2154, 2200, 2251, 2340
BstMCI CGRYCG 4 cut(s) 99, 809, 1669, 2096
BstNI CCWGG 3 cut(s) 1260, 1392, 1758
BstNSI RCATGY 2 cut(s) 1905, 2232
BstPI GGTNACC 1 cut(s) 152
BstSCI CCNGG 8 cut(s) 7, 156, 601, 868, 1258, 1390, 1756, 2095
BstSLI GKGCMC 1 cut(s) 1832
BstUI CGCG 5 cut(s) 147, 464, 543, 557, 1336
BstV1I GCAGC 6 cut(s) 355, 501, 801, 2245, 2263, 2272
BstV2I GAAGAC 2 cut(s) 178, 887
BstX2I RGATCY 3 cut(s) 532, 1645, 2200
BstXI CCANNNNNNTGG 1 cut(s) 1543
BstYI RGATCY 3 cut(s) 532, 1645, 2200
BstZ17I GTATAC 1 cut(s) 528
BstZI CGGCCG 1 cut(s) 2093
Bsu15I ATCGAT 1 cut(s) 509
BsuTUI ATCGAT 1 cut(s) 509
BtgI CCRYGG 2 cut(s) 145, 555
BtsCI GGATG 5 cut(s) 1303, 1693, 1766, 1942, 2275
BtsI GCAGTG 1 cut(s) 827
BtsIMutI CAGTG 4 cut(s) 827, 942, 2200, 2366
Cac8I GCNNGC 6 cut(s) 291, 315, 1340, 1422, 1508, 2364
CaiI CAGNNNCTG 1 cut(s) 1733
CfoI GCGC 4 cut(s) 361, 543, 804, 1338
Cfr10I RCCGGY 2 cut(s) 247, 804
Cfr42I CCGCGG 2 cut(s) 148, 558
ClaI ATCGAT 1 cut(s) 509
CseI GACGC 4 cut(s) 167, 414, 470, 1179
Csp6I GTAC 2 cut(s) 1145, 2179
CspAI ACCGGT 1 cut(s) 247
CspCI CAANNNNNGTGG 2 cut(s) 931, 966
CviAII CATG 8 cut(s) 896, 1123, 1447, 1902, 1911, 2074, 2229, 2457
CviQI GTAC 2 cut(s) 1145, 2179
DdeI CTNAG 2 cut(s) 429, 1698
DpnI GATC 9 cut(s) 534, 1128, 1185, 1365, 1647, 2156, 2202, 2253, 2342
DpnII GATC 9 cut(s) 532, 1126, 1183, 1363, 1645, 2154, 2200, 2251, 2340
DriI GACNNNNNGTC 1 cut(s) 2069
EaeI YGGCCR 4 cut(s) 627, 939, 2093, 2370
EagI CGGCCG 1 cut(s) 2093
Eam1104I CTCTTC 5 cut(s) 8, 273, 327, 710, 2289
Eam1105I GACNNNNNGTC 1 cut(s) 2069
EarI CTCTTC 5 cut(s) 8, 273, 327, 710, 2289
EciI GGCGGA 5 cut(s) 39, 322, 578, 686, 1166
Ecl136II GAGCTC 2 cut(s) 289, 690
EclXI CGGCCG 1 cut(s) 2093
Eco147I AGGCCT 3 cut(s) 796, 1228, 1258
Eco24I GRGCYC 3 cut(s) 291, 692, 1832
Eco47I GGWCC 5 cut(s) 234, 863, 1383, 2077, 2441
Eco52I CGGCCG 1 cut(s) 2093
Eco53kI GAGCTC 2 cut(s) 289, 690
Eco57I CTGAAG 4 cut(s) 172, 966, 996, 1536
Eco72I CACGTG 1 cut(s) 394
Eco91I GGTNACC 1 cut(s) 152
EcoICRI GAGCTC 2 cut(s) 289, 690
EcoO109I RGGNCCY 2 cut(s) 1828, 1829
EcoO65I GGTNACC 1 cut(s) 152
EcoRI GAATTC 1 cut(s) 1661
EcoRII CCWGG 3 cut(s) 1258, 1390, 1756
EcoT22I ATGCAT 2 cut(s) 1916, 2329
EcoT38I GRGCYC 3 cut(s) 291, 692, 1832
Esp3I CGTCTC 1 cut(s) 647
FaeI CATG 8 cut(s) 899, 1126, 1450, 1905, 1914, 2077, 2232, 2460
FatI CATG 8 cut(s) 895, 1122, 1446, 1901, 1910, 2073, 2228, 2456
FauI CCCGC 5 cut(s) 510, 539, 600, 1947, 2025
FblI GTMKAC 4 cut(s) 123, 449, 527, 1239
FokI GGATG 5 cut(s) 1310, 1680, 1773, 1949, 2282
FriOI GRGCYC 3 cut(s) 291, 692, 1832
FspBI CTAG 4 cut(s) 212, 1194, 1380, 1643
GlaI GCGC 4 cut(s) 360, 542, 803, 1337
GsuI CTGGAG 3 cut(s) 107, 503, 788
HgaI GACGC 4 cut(s) 167, 414, 470, 1179
HhaI GCGC 4 cut(s) 361, 543, 804, 1338
Hin1I GRCGYC 2 cut(s) 425, 1190
Hin1II CATG 8 cut(s) 899, 1126, 1450, 1905, 1914, 2077, 2232, 2460
Hin6I GCGC 4 cut(s) 359, 541, 802, 1336
HinP1I GCGC 4 cut(s) 359, 541, 802, 1336
HincII GTYRAC 2 cut(s) 124, 1240
HindII GTYRAC 2 cut(s) 124, 1240
HphI GGTGA 3 cut(s) 724, 1899, 2219
HpyCH4III ACNGT 4 cut(s) 389, 658, 1670, 2081
HpyCH4IV ACGT 3 cut(s) 61, 393, 452
HpyF3I CTNAG 2 cut(s) 429, 1698
HpySE526I ACGT 3 cut(s) 61, 393, 452
Hsp92I GRCGYC 2 cut(s) 425, 1190
Hsp92II CATG 8 cut(s) 899, 1126, 1450, 1905, 1914, 2077, 2232, 2460
HspAI GCGC 4 cut(s) 359, 541, 802, 1336
Kpn2I TCCGGA 3 cut(s) 75, 366, 1294
KspI CCGCGG 2 cut(s) 148, 558
Kzo9I GATC 9 cut(s) 532, 1126, 1183, 1363, 1645, 2154, 2200, 2251, 2340
Lsp1109I GCAGC 6 cut(s) 355, 501, 801, 2245, 2263, 2272
MaeI CTAG 4 cut(s) 212, 1194, 1380, 1643
MaeII ACGT 3 cut(s) 61, 393, 452
MaeIII GTNAC 6 cut(s) 152, 199, 389, 1102, 1436, 1998
MalI GATC 9 cut(s) 534, 1128, 1185, 1365, 1647, 2156, 2202, 2253, 2342
MbiI CCGCTC 4 cut(s) 114, 169, 258, 1984
MboI GATC 9 cut(s) 532, 1126, 1183, 1363, 1645, 2154, 2200, 2251, 2340
MfeI CAATTG 2 cut(s) 1026, 1053
MflI RGATCY 3 cut(s) 532, 1645, 2200
MhlI GDGCHC 3 cut(s) 291, 692, 1832
MlsI TGGCCA 1 cut(s) 2372
MluNI TGGCCA 1 cut(s) 2372
MlyI GAGTC 3 cut(s) 455, 530, 1163
MmeI TCCRAC 3 cut(s) 246, 435, 1834
Mox20I TGGCCA 1 cut(s) 2372
Mph1103I ATGCAT 2 cut(s) 1916, 2329
MroI TCCGGA 3 cut(s) 75, 366, 1294
MroXI GAANNNNTTC 2 cut(s) 71, 1661
MscI TGGCCA 1 cut(s) 2372
MseI TTAA 1 cut(s) 1250
MslI CAYNNNNRTG 3 cut(s) 1445, 1541, 2332
Msp20I TGGCCA 1 cut(s) 2372
MspA1I CMGCKG 3 cut(s) 147, 557, 2029
MspR9I CCNGG 8 cut(s) 9, 158, 603, 870, 1260, 1392, 1758, 2097
MunI CAATTG 2 cut(s) 1026, 1053
Mva1269I GAATGC 2 cut(s) 759, 918
MvaI CCWGG 3 cut(s) 1260, 1392, 1758
MvnI CGCG 5 cut(s) 147, 464, 543, 557, 1336
NciI CCSGG 5 cut(s) 9, 158, 603, 870, 2097
NdeII GATC 9 cut(s) 532, 1126, 1183, 1363, 1645, 2154, 2200, 2251, 2340
NlaIII CATG 8 cut(s) 899, 1126, 1450, 1905, 1914, 2077, 2232, 2460
NlaIV GGNNCC 9 cut(s) 486, 534, 642, 729, 1216, 1807, 1830, 2053, 2442
NmeAIII GCCGAG 3 cut(s) 669, 1583, 2338
NmuCI GTSAC 2 cut(s) 199, 389
NsiI ATGCAT 2 cut(s) 1916, 2329
NspI RCATGY 2 cut(s) 1905, 2232
NspV TTCGAA 1 cut(s) 1061
PceI AGGCCT 3 cut(s) 796, 1228, 1258
PcsI WCGNNNNNNNCGW 5 cut(s) 129, 407, 422, 461, 2336
PctI GAATGC 2 cut(s) 759, 918
PdmI GAANNNNTTC 2 cut(s) 71, 1661
PfeI GAWTC 7 cut(s) 79, 195, 850, 1098, 1318, 1472, 1599
PflFI GACNNNGTC 1 cut(s) 658
PflMI CCANNNNNTGG 1 cut(s) 845
PfoI TCCNGGA 1 cut(s) 1756
PinAI ACCGGT 1 cut(s) 247
PleI GAGTC 3 cut(s) 454, 529, 1163
PmaCI CACGTG 1 cut(s) 394
PmlI CACGTG 1 cut(s) 394
PpsI GAGTC 3 cut(s) 454, 529, 1163
Ppu21I YACGTR 1 cut(s) 394
PsiI TTATAA 1 cut(s) 930
Psp124BI GAGCTC 2 cut(s) 291, 692
Psp6I CCWGG 3 cut(s) 1258, 1390, 1756
PspCI CACGTG 1 cut(s) 394
PspEI GGTNACC 1 cut(s) 152
PspGI CCWGG 3 cut(s) 1258, 1390, 1756
PspN4I GGNNCC 9 cut(s) 486, 534, 642, 729, 1216, 1807, 1830, 2053, 2442
PspOMI GGGCCC 1 cut(s) 1828
PsrI GAACNNNNNNTAC 2 cut(s) 1557, 1589
PstNI CAGNNNCTG 1 cut(s) 1733
PsuI RGATCY 3 cut(s) 532, 1645, 2200
PsyI GACNNNGTC 1 cut(s) 658
RsaI GTAC 2 cut(s) 1146, 2180
RsaNI GTAC 2 cut(s) 1145, 2179
RseI CAYNNNNRTG 3 cut(s) 1445, 1541, 2332
SacI GAGCTC 2 cut(s) 291, 692
SacII CCGCGG 2 cut(s) 148, 558
SalI GTCGAC 2 cut(s) 122, 1238
SaqAI TTAA 1 cut(s) 1250
Sau3AI GATC 9 cut(s) 532, 1126, 1183, 1363, 1645, 2154, 2200, 2251, 2340
SchI GAGTC 3 cut(s) 455, 530, 1163
ScrFI CCNGG 8 cut(s) 9, 158, 603, 870, 1260, 1392, 1758, 2097
SduI GDGCHC 3 cut(s) 291, 692, 1832
Sfr303I CCGCGG 2 cut(s) 148, 558
SfuI TTCGAA 1 cut(s) 1061
SgrBI CCGCGG 2 cut(s) 148, 558
SgrDI CGTCGACG 1 cut(s) 122
SinI GGWCC 5 cut(s) 234, 863, 1383, 2077, 2441
SmiMI CAYNNNNRTG 3 cut(s) 1445, 1541, 2332
SmlI CTYRAG 3 cut(s) 173, 1313, 2435
SmoI CTYRAG 3 cut(s) 173, 1313, 2435
SseBI AGGCCT 3 cut(s) 796, 1228, 1258
SspMI CTAG 4 cut(s) 212, 1194, 1380, 1643
SstI GAGCTC 2 cut(s) 291, 692
StuI AGGCCT 3 cut(s) 796, 1228, 1258
StyD4I CCNGG 8 cut(s) 7, 156, 601, 868, 1258, 1390, 1756, 2095
TaaI ACNGT 4 cut(s) 389, 658, 1670, 2081
TaiI ACGT 3 cut(s) 64, 396, 455
TaqI TCGA 8 cut(s) 95, 123, 509, 662, 698, 1061, 1239, 1665
TaqII GACCGA 1 cut(s) 113
TatI WGTACW 1 cut(s) 1144
TfiI GAWTC 7 cut(s) 79, 195, 850, 1098, 1318, 1472, 1599
Tru1I TTAA 1 cut(s) 1250
Tru9I TTAA 1 cut(s) 1250
TscAI CASTG 4 cut(s) 827, 949, 2200, 2373
TseFI GTSAC 2 cut(s) 199, 389
TseI GCWGC 6 cut(s) 343, 514, 814, 2258, 2276, 2285
Tsp45I GTSAC 2 cut(s) 199, 389
TspGWI ACGGA 2 cut(s) 109, 545
TspRI CASTG 4 cut(s) 827, 949, 2200, 2373
Tth111I GACNNNGTC 1 cut(s) 658
Van91I CCANNNNNTGG 1 cut(s) 845
VpaK11BI GGWCC 5 cut(s) 234, 863, 1383, 2077, 2441
XapI RAATTY 8 cut(s) 933, 1162, 1278, 1303, 1661, 1712, 1723, 2236
XceI RCATGY 2 cut(s) 1905, 2232
XcmI CCANNNNNNNNNTGG 1 cut(s) 2200
XmiI GTMKAC 4 cut(s) 123, 449, 527, 1239
XmnI GAANNNNTTC 2 cut(s) 71, 1661
XspI CTAG 4 cut(s) 212, 1194, 1380, 1643
Zsp2I ATGCAT 2 cut(s) 1916, 2329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.