Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007658

Physical Location & Seq

Genomic Coordinates Forward (+)

15868399 .. 15869097

Gene Structure 699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGATATCCAAGGCCCAAGTGAGTGAGCAATTAAGGCTTCATAAATTTGTCTGCGCCATTCAAGTAGAGTTAGGATTTCAGCTGCTCACGGCTAGCCTGCTACACCTCCCCAATTTTGTAATAAGAACACACCTTCCCCTGTTTCCGAGAAACCCTAATCTGAAAAACTTTGAGATGGGGAAAAGAGGAAGTAGCAGCGGGAGCGTTCCTATTCGGGGATTTACGAAACTTGTTACAGAATCAAGAAATAAGGGATTAACTGTGGAGGAGATTGTTGATGATCACCGTTCCAATAACCGTGAATGCGTTCGGCTGAAACGTCAAACCCTCATGATCAAAGTCAAACAAATCATAAACTCATTGAGCGAAGAAGAAGAGGAAAGTGAAGGAAGTAGGACTAAGAAAAAACAGAGGAGAGATGATTCAGAACAGAGGAATTCGGATTTATGTATATCATCATCGCCTTATTCTGCTTCATCATCCGGAAATGTATTGACATCGGAAGATAACATGCAGTTTGATGTCACCAATGATGGTTTACGTGTTTCTTACTCTAATAAATCCATGACGCCTTTTTGTGCCGATACAATGAAGAAAATGAAGATGAAAGGTATATCTAGTGAAGAGGGAAGTAAGAATTGTGATGTAGAGGTAAAAGGACCAACCTTTAAGGACTTTGGTGGGTTAACCAGTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AAA Nucleolin_bd

Protein Analysis

232

Amino Acids

26.03

Weight (kDa)

9.07

Isoelectric Point (pI)

54.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37910
fragaria_vesca	FvH4_2g31390 FvH4_2g31390 FvH4_2g31390
malus_domestica	MD09G1249100.v1.1 MD17G1241700.v1.1
prunus_persica	Prupe.3G135900_v2.0.a1 Prupe.3G135900_v2.0.a1 Prupe.3G135900_v2.0.a1 Prupe.4G275000_v2.0.a1
pyrus_communis	pycom09g16600 pycom17g24480
rosa_chinensis	RchiOBHm_Chr6g0311431
rosa_laevigata	RLG00000010407
rosa_multiflora	Rmu_sc0006915.1_g000008 Rmu_sc0013619.1_g000001 Rmu_sc0015790.1_g000001 Rmu_sc0037156.1_g000001
rosa_roxburghii	Rroxscaffold_7G00157620
rosa_rugosa	Rorug06G0389000
rosa_samantha	Rh6AG503300 Rh6BG513900 Rh6DG505900
rosa_wichuraiana	Rw6G043830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	482
AciI	CCGC	1 cut(s)	198
AcsI	RAATTY	2 cut(s)	44, 436
AcyI	GRCGYC	1 cut(s)	569
AfiI	CCNNNNNNNGG	1 cut(s)	215
AflIII	ACRYGT	1 cut(s)	541
AgsI	TTSAA	1 cut(s)	62
AloI	GAACNNNNNNTCC	2 cut(s)	118, 150
AluBI	AGCT	1 cut(s)	82
AluI	AGCT	1 cut(s)	82
Aor13HI	TCCGGA	1 cut(s)	482
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	2 cut(s)	82, 195
ApoI	RAATTY	2 cut(s)	44, 436
Asp700I	GAANNNNTTC	1 cut(s)	306
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	2 cut(s)	13, 659
AsuHPI	GGTGA	2 cut(s)	275, 517
AsuNHI	GCTAGC	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	659
BbvI	GCAGC	2 cut(s)	69, 207
BccI	CCATC	2 cut(s)	169, 527
BceAI	ACGGC	1 cut(s)	105
BclI	TGATCA	2 cut(s)	280, 333
BfaI	CTAG	2 cut(s)	93, 618
BisI	GCNGC	2 cut(s)	83, 196
BlsI	GCNGC	2 cut(s)	84, 197
Bme18I	GGWCC	1 cut(s)	659
BmgT120I	GGNCC	2 cut(s)	13, 659
BmtI	GCTAGC	1 cut(s)	96
BsaAI	YACGTR	1 cut(s)	542
BsaHI	GRCGYC	1 cut(s)	569
BsaJI	CCNNGG	1 cut(s)	9
BsaWI	WCCGGW	1 cut(s)	482
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	690
BseAI	TCCGGA	1 cut(s)	482
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	1 cut(s)	479
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseNI	ACTGG	1 cut(s)	690
BseRI	GAGGAG	2 cut(s)	281, 427
BseXI	GCAGC	2 cut(s)	69, 207
BshFI	GGCC	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	483
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	14
Bsp13I	TCCGGA	1 cut(s)	482
Bsp143I	GATC	2 cut(s)	280, 333
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	1 cut(s)	14
BspEI	TCCGGA	1 cut(s)	482
BspHI	TCATGA	1 cut(s)	330
BspOI	GCTAGC	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	690
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	2 cut(s)	280, 333
BssNI	GRCGYC	1 cut(s)	569
BssT1I	CCWWGG	1 cut(s)	9
Bst4CI	ACNGT	3 cut(s)	262, 287, 299
Bst6I	CTCTTC	2 cut(s)	369, 618
BstACI	GRCGYC	1 cut(s)	569
BstBAI	YACGTR	1 cut(s)	542
BstC8I	GCNNGC	2 cut(s)	94, 98
BstDEI	CTNAG	1 cut(s)	399
BstF5I	GGATG	1 cut(s)	479
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	2 cut(s)	283, 336
BstMBI	GATC	2 cut(s)	280, 333
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 201
BstNSI	RCATGY	1 cut(s)	514
BstV1I	GCAGC	2 cut(s)	69, 207
BsuRI	GGCC	1 cut(s)	14
BtgZI	GCGATG	1 cut(s)	444
BtsCI	GGATG	1 cut(s)	479
Cac8I	GCNNGC	2 cut(s)	94, 98
CciI	TCATGA	1 cut(s)	330
CfoI	GCGC	1 cut(s)	56
Cfr13I	GGNCC	2 cut(s)	13, 659
CseI	GACGC	1 cut(s)	577
CviAII	CATG	3 cut(s)	331, 511, 565
CviJI	RGCY	6 cut(s)	14, 37, 82, 92, 96, 313
CviKI_1	RGCY	6 cut(s)	14, 37, 82, 92, 96, 313
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	2 cut(s)	282, 335
DpnII	GATC	2 cut(s)	280, 333
Eam1104I	CTCTTC	2 cut(s)	369, 618
EarI	CTCTTC	2 cut(s)	369, 618
Eco130I	CCWWGG	1 cut(s)	9
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	659
EcoRI	GAATTC	1 cut(s)	436
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	3 cut(s)	334, 514, 568
FaiI	YATR	9 cut(s)	42, 332, 353, 448, 452, 512, 566, 614, 697
FatI	CATG	3 cut(s)	330, 510, 564
FauI	CCCGC	1 cut(s)	191
FbaI	TGATCA	2 cut(s)	280, 333
Fnu4HI	GCNGC	2 cut(s)	83, 196
FokI	GGATG	1 cut(s)	466
Fsp4HI	GCNGC	2 cut(s)	83, 196
FspBI	CTAG	2 cut(s)	93, 618
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	2 cut(s)	83, 196
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	1 cut(s)	483
HgaI	GACGC	1 cut(s)	577
HhaI	GCGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	569
Hin1II	CATG	3 cut(s)	334, 514, 568
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HincII	GTYRAC	1 cut(s)	687
HindII	GTYRAC	1 cut(s)	687
HinfI	GANTC	2 cut(s)	239, 422
HpaI	GTTAAC	1 cut(s)	687
HpaII	CCGG	1 cut(s)	483
HphI	GGTGA	2 cut(s)	275, 517
Hpy166II	GTNNAC	2 cut(s)	539, 687
Hpy188I	TCNGA	5 cut(s)	147, 162, 427, 442, 502
Hpy188III	TCNNGA	3 cut(s)	243, 331, 483
Hpy8I	GTNNAC	2 cut(s)	539, 687
HpyAV	CCTTC	2 cut(s)	143, 380
HpyCH4III	ACNGT	3 cut(s)	262, 287, 299
HpyCH4IV	ACGT	2 cut(s)	319, 541
HpyCH4V	TGCA	1 cut(s)	514
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 201
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	2 cut(s)	319, 541
Hsp92I	GRCGYC	1 cut(s)	569
Hsp92II	CATG	3 cut(s)	334, 514, 568
HspAI	GCGC	1 cut(s)	54
Kpn2I	TCCGGA	1 cut(s)	482
Ksp22I	TGATCA	2 cut(s)	280, 333
KspAI	GTTAAC	1 cut(s)	687
Kzo9I	GATC	2 cut(s)	280, 333
LmnI	GCTCC	1 cut(s)	201
LpnPI	CCDG	3 cut(s)	110, 152, 496
Lsp1109I	GCAGC	2 cut(s)	69, 207
MaeI	CTAG	2 cut(s)	93, 618
MaeII	ACGT	2 cut(s)	319, 541
MaeIII	GTNAC	2 cut(s)	232, 523
MalI	GATC	2 cut(s)	282, 335
MboI	GATC	2 cut(s)	280, 333
MboII	GAAGA	7 cut(s)	380, 383, 386, 515, 604, 613, 635
MluCI	AATT	5 cut(s)	29, 44, 112, 436, 637
MnlI	CCTC	9 cut(s)	116, 179, 259, 338, 370, 405, 426, 619, 643
MroI	TCCGGA	1 cut(s)	482
MroXI	GAANNNNTTC	1 cut(s)	306
MseI	TTAA	4 cut(s)	32, 257, 669, 686
MspA1I	CMGCKG	2 cut(s)	82, 198
MspI	CCGG	1 cut(s)	483
Mva1269I	GAATGC	1 cut(s)	308
MwoI	GCNNNNNNNGC	2 cut(s)	34, 201
NdeII	GATC	2 cut(s)	280, 333
NheI	GCTAGC	1 cut(s)	92
NlaIII	CATG	3 cut(s)	334, 514, 568
NmuCI	GTSAC	1 cut(s)	523
NspI	RCATGY	1 cut(s)	514
PagI	TCATGA	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	1 cut(s)	316
PctI	GAATGC	1 cut(s)	308
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	239, 422
PkrI	GCNGC	2 cut(s)	84, 197
Ppu21I	YACGTR	1 cut(s)	542
PspPI	GGNCC	2 cut(s)	13, 659
PvuII	CAGCTG	1 cut(s)	82
SaqAI	TTAA	4 cut(s)	32, 257, 669, 686
SatI	GCNGC	2 cut(s)	83, 196
Sau3AI	GATC	2 cut(s)	280, 333
Sau96I	GGNCC	2 cut(s)	13, 659
SetI	ASST	8 cut(s)	84, 108, 135, 322, 544, 613, 654, 668
SinI	GGWCC	1 cut(s)	659
Sse9I	AATT	5 cut(s)	29, 44, 112, 436, 637
SsiI	CCGC	1 cut(s)	198
SspMI	CTAG	2 cut(s)	93, 618
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	3 cut(s)	262, 287, 299
TaiI	ACGT	2 cut(s)	322, 544
TasI	AATT	5 cut(s)	29, 44, 112, 436, 637
TfiI	GAWTC	2 cut(s)	239, 422
Tru1I	TTAA	4 cut(s)	32, 257, 669, 686
Tru9I	TTAA	4 cut(s)	32, 257, 669, 686
TseFI	GTSAC	1 cut(s)	523
TseI	GCWGC	2 cut(s)	82, 195
Tsp45I	GTSAC	1 cut(s)	523
TspDTI	ATGAA	5 cut(s)	29, 465, 605, 614, 620
VpaK11BI	GGWCC	1 cut(s)	659
XapI	RAATTY	2 cut(s)	44, 436
XceI	RCATGY	1 cut(s)	514
XmnI	GAANNNNTTC	1 cut(s)	306
XspI	CTAG	2 cut(s)	93, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.