Rroxscaffold_7G00157620

Cell division control protein 48 homolog C-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007658
Physical Location & Seq
Forward (+)
1385708 .. 1386700
993 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00157620.1

Sequence Viewer

Length: 993 bp
ATGAAGCCGGGAAAGAGGTCTGGCGGAGTAGGAGGAGGGAGGTCGTCGTTTTCCGATAGAAGGCTGAACGAGTTTCGGACTCGGCTGGAGTCGTCCACCGAGTTAGACCACAGGTCCTCCGTGGACGAAATCGTTGACCATCTCCGCGGCGGTTACCCGGACTACGAGCGACTCAAGCGTCAGGTTTTCAGAAGGTTCGTCTCGCAAACCCTAGCCTCTCCCTCGTTCAAGCGCTCGAAGCCCCTACCGGTTATGAGCGGCTCATCGGAAGAAGAAGAAGAAGAAGAGGAGGTGGCCGGAAGTAAGAGGCGGAAGCGTGCTCGGAATGAGAGGGAAGAGAGACTGCAGCAGATAGAGGAAGCGCACGTTCGGAAAATTAGGCAGAGCAATGGTAATGTGCCGTCTTCGTCGTCGTCGTCAGCTTCGGAGGACGAAGGAGATGAGGAGTCTACGTCGCAGGACGCGATATACGGCGAGGAATTGGAGCCCAAGTTTGATTTGATGAAATCGATGCTGCGGGAGGCGTATACGGATCCGAAAAGCGGCGGGAAATCCAAGGCGGCGGAGCAGCAGAAGGAGAAGAATGTGGAAATGGATATTCCAGGGCGGGAGAAGGTTAAATTAGTGGCCGGAAGTAGAGGGCCGAGGCCGGAGAGTGTGTCGAATAAGGCCGAGAGTGAGGCCAAGAGCTCTATTTCGAGAGGTGTTGAGGTGAAGAGGAATGAGGGGCCGAAGTTTAGTGACTTAGGTGGAATGCAGAAAGTGCTGGAGGAGCTGAACAAGGAGGTTATTAGGCCGCTTCGCCGGTCGTGGCTGCCGCAGTGGCTCGGAGTTAGGCCAATGTCTGGGATTTTGTTGTGTGGACCGCCGGGGTGTGGGAAGACTACTTTGGCTCATGCCATTGCCAATGAGACTGGCATTCCCTTCTATAAGATTTCGGCCACTGAAGTGGTCTCGGGAGTTTCAGGTATGGCTCTTTTCCTTTCAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
AAA Nucleolin_bd

Protein Analysis

330

Amino Acids

36.6

Weight (kDa)

8.88

Isoelectric Point (pI)

74.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 284 - 320 4.2e-11 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 177
AccB7I CCANNNNNTGG 1 cut(s) 845
AccBSI CCGCTC 1 cut(s) 258
AccI GTMKAC 2 cut(s) 449, 527
AccII CGCG 2 cut(s) 147, 464
AclWI GGATC 2 cut(s) 527, 540
AcoI YGGCCR 3 cut(s) 294, 627, 939
AcuI CTGAAG 1 cut(s) 966
AfeI AGCGCT 1 cut(s) 233
AfiI CCNNNNNNNGG 4 cut(s) 60, 542, 845, 875
AgeI ACCGGT 1 cut(s) 247
AgsI TTSAA 2 cut(s) 229, 987
AhdI GACNNNNNGTC 1 cut(s) 112
AjnI CCWGG 1 cut(s) 601
AjuI GAANNNNNNNTTGG 2 cut(s) 872, 904
AleI CACNNNNGTG 1 cut(s) 947
AluBI AGCT 3 cut(s) 422, 690, 775
AluI AGCT 3 cut(s) 422, 690, 775
Alw21I GWGCWC 2 cut(s) 322, 692
Alw26I GTCTC 4 cut(s) 205, 334, 905, 958
AlwI GGATC 2 cut(s) 527, 540
Ama87I CYCGRG 1 cut(s) 955
Aor51HI AGCGCT 1 cut(s) 233
ApeKI GCWGC 4 cut(s) 346, 514, 568, 814
AsiGI ACCGGT 1 cut(s) 247
AspLEI GCGC 2 cut(s) 234, 364
AspS9I GGNCC 4 cut(s) 114, 641, 728, 863
AsuC2I CCSGG 3 cut(s) 9, 158, 870
AsuHPI GGTGA 1 cut(s) 724
AvaI CYCGRG 1 cut(s) 955
AvaII GGWCC 2 cut(s) 114, 863
BamHI GGATCC 1 cut(s) 532
BanII GRGCYC 2 cut(s) 489, 692
BbsI GAAGAC 2 cut(s) 396, 887
Bbv12I GWGCWC 2 cut(s) 322, 692
BbvI GCAGC 4 cut(s) 358, 501, 580, 801
BccI CCATC 1 cut(s) 147
BceAI ACGGC 2 cut(s) 385, 487
BciT130I CCWGG 1 cut(s) 603
BcnI CCSGG 3 cut(s) 9, 158, 870
BcoDI GTCTC 4 cut(s) 205, 334, 905, 958
BfaI CTAG 1 cut(s) 212
BfmI CTRYAG 1 cut(s) 344
BfoI RGCGCY 1 cut(s) 235
BglI GCCNNNNNGGC 1 cut(s) 823
Bme1390I CCNGG 4 cut(s) 9, 158, 603, 870
Bme18I GGWCC 2 cut(s) 114, 863
BmeRI GACNNNNNGTC 1 cut(s) 112
BmeT110I CYCGRG 1 cut(s) 955
BmgT120I GGNCC 4 cut(s) 114, 641, 728, 863
BmiI GGNNCC 3 cut(s) 486, 534, 729
BmrFI CCNGG 4 cut(s) 9, 158, 603, 870
BmsI GCATC 1 cut(s) 501
BpiI GAAGAC 2 cut(s) 396, 887
BpmI CTGGAG 2 cut(s) 107, 788
BpuEI CTTGAG 1 cut(s) 158
BpuMI CCSGG 3 cut(s) 9, 158, 870
Bsa29I ATCGAT 1 cut(s) 509
BsaI GGTCTC 1 cut(s) 958
BsaJI CCNNGG 6 cut(s) 120, 145, 555, 602, 644, 869
BsaWI WCCGGW 1 cut(s) 247
BsaXI ACNNNNNCTCC 8 cut(s) 101, 131, 437, 467, 476, 506, 644, 674
Bsc4I CCNNNNNNNGG 4 cut(s) 60, 542, 845, 875
Bse118I RCCGGY 2 cut(s) 247, 804
Bse1I ACTGG 1 cut(s) 919
Bse3DI GCAATG 2 cut(s) 394, 900
BseBI CCWGG 1 cut(s) 603
BseCI ATCGAT 1 cut(s) 509
BseDI CCNNGG 6 cut(s) 120, 145, 555, 602, 644, 869
BseLI CCNNNNNNNGG 4 cut(s) 60, 542, 845, 875
BseMI GCAATG 2 cut(s) 394, 900
BseNI ACTGG 1 cut(s) 919
BseRI GAGGAG 4 cut(s) 48, 302, 458, 785
BseXI GCAGC 4 cut(s) 358, 501, 580, 801
Bsh1236I CGCG 2 cut(s) 147, 464
Bsh1285I CGRYCG 1 cut(s) 809
BshTI ACCGGT 1 cut(s) 247
BshVI ATCGAT 1 cut(s) 509
BsiEI CGRYCG 1 cut(s) 809
BsiHKAI GWGCWC 2 cut(s) 322, 692
BsiHKCI CYCGRG 1 cut(s) 955
BsiSI CCGG 8 cut(s) 8, 158, 248, 297, 630, 650, 805, 869
BslI CCNNNNNNNGG 4 cut(s) 60, 542, 845, 875
BsmAI GTCTC 4 cut(s) 205, 334, 905, 958
BsmBI CGTCTC 1 cut(s) 205
BsmI GAATGC 2 cut(s) 759, 918
Bso31I GGTCTC 1 cut(s) 958
BsoBI CYCGRG 1 cut(s) 955
Bsp1286I GDGCHC 3 cut(s) 322, 489, 692
Bsp143I GATC 1 cut(s) 532
BspDI ATCGAT 1 cut(s) 509
BspFNI CGCG 2 cut(s) 147, 464
BspLI GGNNCC 3 cut(s) 486, 534, 729
BspMAI CTGCAG 1 cut(s) 348
BspPI GGATC 2 cut(s) 527, 540
BspTNI GGTCTC 1 cut(s) 958
BsrBI CCGCTC 1 cut(s) 258
BsrDI GCAATG 2 cut(s) 394, 900
BsrFI RCCGGY 2 cut(s) 247, 804
BsrI ACTGG 1 cut(s) 919
BssAI RCCGGY 2 cut(s) 247, 804
BssECI CCNNGG 6 cut(s) 120, 145, 555, 602, 644, 869
BssMI GATC 1 cut(s) 532
BssNAI GTATAC 1 cut(s) 528
BssT1I CCWWGG 1 cut(s) 555
Bst1107I GTATAC 1 cut(s) 528
Bst2UI CCWGG 1 cut(s) 603
Bst6I CTCTTC 3 cut(s) 279, 330, 710
BstAPI GCANNNNNTGC 1 cut(s) 763
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 1 cut(s) 745
BstDSI CCRYGG 2 cut(s) 120, 145
BstEII GGTNACC 1 cut(s) 152
BstFNI CGCG 2 cut(s) 147, 464
BstH2I RGCGCY 1 cut(s) 235
BstHHI GCGC 2 cut(s) 234, 364
BstKTI GATC 1 cut(s) 535
BstMAI GTCTC 4 cut(s) 205, 334, 905, 958
BstMBI GATC 1 cut(s) 532
BstMCI CGRYCG 1 cut(s) 809
BstMWI GCNNNNNNNGC 5 cut(s) 175, 238, 763, 772, 823
BstNI CCWGG 1 cut(s) 603
BstPI GGTNACC 1 cut(s) 152
BstSCI CCNGG 4 cut(s) 7, 156, 601, 868
BstSFI CTRYAG 1 cut(s) 344
BstUI CGCG 2 cut(s) 147, 464
BstV1I GCAGC 4 cut(s) 358, 501, 580, 801
BstV2I GAAGAC 2 cut(s) 396, 887
BstX2I RGATCY 1 cut(s) 532
BstXI CCANNNNNNTGG 1 cut(s) 949
BstYI RGATCY 1 cut(s) 532
BstZ17I GTATAC 1 cut(s) 528
Bsu15I ATCGAT 1 cut(s) 509
BsuTUI ATCGAT 1 cut(s) 509
BtgI CCRYGG 2 cut(s) 120, 145
BtsI GCAGTG 1 cut(s) 827
BtsIMutI CAGTG 2 cut(s) 827, 942
Cac8I GCNNGC 1 cut(s) 318
CfoI GCGC 2 cut(s) 234, 364
Cfr10I RCCGGY 2 cut(s) 247, 804
Cfr13I GGNCC 4 cut(s) 114, 641, 728, 863
Cfr42I CCGCGG 1 cut(s) 148
ClaI ATCGAT 1 cut(s) 509
CseI GACGC 2 cut(s) 167, 470
CspAI ACCGGT 1 cut(s) 247
CviAII CATG 1 cut(s) 896
DdeI CTNAG 1 cut(s) 745
DpnI GATC 1 cut(s) 534
DpnII GATC 1 cut(s) 532
DrdI GACNNNNNNGTC 1 cut(s) 177
DriI GACNNNNNGTC 1 cut(s) 112
DseDI GACNNNNNNGTC 1 cut(s) 177
EaeI YGGCCR 3 cut(s) 294, 627, 939
Eam1104I CTCTTC 3 cut(s) 279, 330, 710
Eam1105I GACNNNNNGTC 1 cut(s) 112
EarI CTCTTC 3 cut(s) 279, 330, 710
EciI GGCGGA 3 cut(s) 39, 325, 578
Ecl136II GAGCTC 1 cut(s) 690
Eco130I CCWWGG 1 cut(s) 555
Eco24I GRGCYC 2 cut(s) 489, 692
Eco31I GGTCTC 1 cut(s) 958
Eco47I GGWCC 2 cut(s) 114, 863
Eco47III AGCGCT 1 cut(s) 233
Eco53kI GAGCTC 1 cut(s) 690
Eco57I CTGAAG 1 cut(s) 966
Eco88I CYCGRG 1 cut(s) 955
Eco91I GGTNACC 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 690
EcoO109I RGGNCCY 1 cut(s) 114
EcoO65I GGTNACC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 601
EcoT14I CCWWGG 1 cut(s) 555
EcoT38I GRGCYC 2 cut(s) 489, 692
ErhI CCWWGG 1 cut(s) 555
Esp3I CGTCTC 1 cut(s) 205
FaeI CATG 1 cut(s) 899
FaiI YATR 6 cut(s) 254, 469, 528, 897, 930, 971
FatI CATG 1 cut(s) 895
FauI CCCGC 3 cut(s) 510, 539, 600
FblI GTMKAC 2 cut(s) 449, 527
FriOI GRGCYC 2 cut(s) 489, 692
FspBI CTAG 1 cut(s) 212
GlaI GCGC 2 cut(s) 233, 363
GsuI CTGGAG 2 cut(s) 107, 788
HaeII RGCGCY 1 cut(s) 235
HapII CCGG 8 cut(s) 8, 158, 248, 297, 630, 650, 805, 869
HgaI GACGC 2 cut(s) 167, 470
HhaI GCGC 2 cut(s) 234, 364
Hin1II CATG 1 cut(s) 899
Hin6I GCGC 2 cut(s) 232, 362
HinP1I GCGC 2 cut(s) 232, 362
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 4 cut(s) 79, 89, 171, 446
HpaII CCGG 8 cut(s) 8, 158, 248, 297, 630, 650, 805, 869
HphI GGTGA 1 cut(s) 724
Hpy166II GTNNAC 6 cut(s) 96, 124, 136, 450, 528, 863
Hpy188I TCNGA 9 cut(s) 55, 78, 191, 268, 324, 372, 427, 537, 830
Hpy188III TCNNGA 2 cut(s) 699, 957
Hpy8I GTNNAC 6 cut(s) 96, 124, 136, 450, 528, 863
Hpy99I CGWCG 5 cut(s) 49, 412, 415, 418, 457
HpyAV CCTTC 6 cut(s) 54, 186, 428, 568, 607, 934
HpyCH4IV ACGT 2 cut(s) 366, 452
HpyCH4V TGCA 2 cut(s) 346, 757
HpyF10VI GCNNNNNNNGC 5 cut(s) 175, 238, 763, 772, 823
HpyF3I CTNAG 1 cut(s) 745
HpySE526I ACGT 2 cut(s) 366, 452
Hsp92II CATG 1 cut(s) 899
HspAI GCGC 2 cut(s) 232, 362
KspI CCGCGG 1 cut(s) 148
Kzo9I GATC 1 cut(s) 532
LmnI GCTCC 3 cut(s) 484, 565, 772
Lsp1109I GCAGC 4 cut(s) 358, 501, 580, 801
LweI GCATC 1 cut(s) 501
MaeI CTAG 1 cut(s) 212
MaeII ACGT 2 cut(s) 366, 452
MaeIII GTNAC 2 cut(s) 152, 740
MalI GATC 1 cut(s) 534
MbiI CCGCTC 1 cut(s) 258
MboI GATC 1 cut(s) 532
MflI RGATCY 1 cut(s) 532
MhlI GDGCHC 3 cut(s) 322, 489, 692
MluCI AATT 4 cut(s) 375, 479, 620, 987
MlyI GAGTC 4 cut(s) 73, 98, 165, 455
MseI TTAA 1 cut(s) 618
MslI CAYNNNNRTG 1 cut(s) 947
MspA1I CMGCKG 1 cut(s) 147
MspI CCGG 8 cut(s) 8, 158, 248, 297, 630, 650, 805, 869
MspR9I CCNGG 4 cut(s) 9, 158, 603, 870
Mva1269I GAATGC 2 cut(s) 759, 918
MvaI CCWGG 1 cut(s) 603
MvnI CGCG 2 cut(s) 147, 464
MwoI GCNNNNNNNGC 5 cut(s) 175, 238, 763, 772, 823
NciI CCSGG 3 cut(s) 9, 158, 870
NdeII GATC 1 cut(s) 532
NlaIII CATG 1 cut(s) 899
NlaIV GGNNCC 3 cut(s) 486, 534, 729
NmeAIII GCCGAG 3 cut(s) 61, 669, 697
NmuCI GTSAC 1 cut(s) 740
OliI CACNNNNGTG 1 cut(s) 947
PcsI WCGNNNNNNNCGW 2 cut(s) 413, 461
PctI GAATGC 2 cut(s) 759, 918
PflMI CCANNNNNTGG 1 cut(s) 845
PinAI ACCGGT 1 cut(s) 247
PleI GAGTC 4 cut(s) 73, 97, 165, 454
PpsI GAGTC 4 cut(s) 73, 97, 165, 454
PpuMI RGGWCCY 1 cut(s) 114
Psp124BI GAGCTC 1 cut(s) 692
Psp5II RGGWCCY 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 601
PspEI GGTNACC 1 cut(s) 152
PspGI CCWGG 1 cut(s) 601
PspN4I GGNNCC 3 cut(s) 486, 534, 729
PspPI GGNCC 4 cut(s) 114, 641, 728, 863
PspPPI RGGWCCY 1 cut(s) 114
PstI CTGCAG 1 cut(s) 348
PsuI RGATCY 1 cut(s) 532
RseI CAYNNNNRTG 1 cut(s) 947
SacI GAGCTC 1 cut(s) 692
SacII CCGCGG 1 cut(s) 148
SaqAI TTAA 1 cut(s) 618
Sau3AI GATC 1 cut(s) 532
Sau96I GGNCC 4 cut(s) 114, 641, 728, 863
SchI GAGTC 4 cut(s) 73, 98, 165, 455
ScrFI CCNGG 4 cut(s) 9, 158, 603, 870
SduI GDGCHC 3 cut(s) 322, 489, 692
SfaNI GCATC 1 cut(s) 501
SfcI CTRYAG 1 cut(s) 344
Sfr303I CCGCGG 1 cut(s) 148
SgrBI CCGCGG 1 cut(s) 148
SinI GGWCC 2 cut(s) 114, 863
SmiMI CAYNNNNRTG 1 cut(s) 947
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 4 cut(s) 375, 479, 620, 987
SspMI CTAG 1 cut(s) 212
SstI GAGCTC 1 cut(s) 692
StyD4I CCNGG 4 cut(s) 7, 156, 601, 868
StyI CCWWGG 1 cut(s) 555
TaiI ACGT 2 cut(s) 369, 455
TaqI TCGA 4 cut(s) 236, 509, 662, 698
TasI AATT 4 cut(s) 375, 479, 620, 987
TauI GCSGC 6 cut(s) 150, 261, 546, 563, 799, 820
Tru1I TTAA 1 cut(s) 618
Tru9I TTAA 1 cut(s) 618
TscAI CASTG 2 cut(s) 827, 949
TseFI GTSAC 1 cut(s) 740
TseI GCWGC 4 cut(s) 346, 514, 568, 814
Tsp45I GTSAC 1 cut(s) 740
TspDTI ATGAA 2 cut(s) 17, 518
TspGWI ACGGA 2 cut(s) 109, 545
TspRI CASTG 2 cut(s) 827, 949
Van91I CCANNNNNTGG 1 cut(s) 845
VpaK11BI GGWCC 2 cut(s) 114, 863
XmiI GTMKAC 2 cut(s) 449, 527
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.