Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006915.1

Orthogroup ID

OG0007658

Physical Location & Seq

Genomic Coordinates Reverse (-)

23632 .. 30042

Gene Structure 6411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006915.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2925 bp

atgaagccgggaaagaggtctggcggagtaggaggagggaggtcgtcgttttccgatagaaggctgaacgagtttcggactcggctggagtcgtccaccgagttagaccacaggtcctccgtggacgaaatcgttgaccatctccgcggcggttacccggactacgagcgactcaagcgtcaggttttcagaaggttcgtctcacaaaccctagcctctccctcgttcaagcgctcgaagcccctaccggttatgagcggctcatcggaagaagaagaagaggagctggccggaagtaagaggcggaagcgtgctcggaatgagagggaagagagactgcagcagatagaggaagcgcacgttcggaaaagtaggcagagcaatggtaatgtgccgtctccatcgtcgtcgtcgtcgtcgtcagcttcggaggacgaaggagatgaggagtctacgtcggaggacgcgatatacggcgaggaattggagccgaagtttgacttgatgaaatcgatgctgcgggaggcgtatacggatccgaaaagcggcgggaaatccaaggcggcggagcagcagaaggagaagaatgtggaaatggatattccagggcgggagaaggttaaattagtggcgggaagtagagggccgaggccggagagtgtgtcgaataaggccgagagtgaggccaagagctctatttcgagaggtgttgaggtgaagaggaatgaggggccgaagtttagtgacttgggtggaatgcagaaagtgctggaggagctgaacaaggaggttattaggccgcttcgccggtcgtggctgccgcagtggctcggagttaggccaatgtctgggattttgttgtgtggaccaccagggtgtgggaagactactttggctcatgccattgccaatgagactggcattcccttctataagatttcggccactgaagtggtctcgggagtttcaggtgcatctgaagaaaatatacgagatcttttttcaaaagcatatagaactgccccttcaattgtttttattgatgaaattgatgcaattgcttcgaaaagagaaaatatgcaaagggaaatggagaagcgaatggttacacaactgatgacttgcatggatcaatctcatagaccagtacaggcggaagatgcaaattctgactcacaaagttcagatcaggcatctggctatgttcttgttattggagccacgaataggcctgatgctgttgaccctgcattaaggaggcctgggcgatttggtcgtgagattcttttgggtgttccagatgaaaattcaaggcttgagattctgtctgtgcttactcgcaagctaaaacttgaaggttcttttgatcttctaaagattgctaggtccacaccagggtatgttggagctgatttggcagagctggccgacagggcaggtaacattgccatgaacaggatttttgatgaaattgattcgaccattgaggaaggcaaggaagatttctgccggcaacctgaagaaatggaaaaatatgccatcagtatggctgattttgaggaagcagttcaagtcgttcaaccttcgtcaaaaagagagggattctcggcaattcctaatgtgaaatgggaaaatgttggtgggctagatctcttgaggaaggaattcgaccgttacatagttaggcgtatcaaacatcctgagaattatgagaaatttggagtaaattcagagacaggtttcttgctgtatgggcctcccggatgtggaaaaacactaatagcaaaggccgttgctaatgaagcaggagccaatttcatttatattaagggccctgaacttctgaataaatatgttggagaaagtgaactggcagtccggacattatttactcgtgcaaggacatgctcaccatgcatacttttctttgatgaggtggatgctttgacaacaaggcggggaaaagaaggggggtgggttgttgagcggttgttgaaccagttacttatagagttagatggtgcagaccagcggcggggtgtatttgttgttggtgccactaatagacctgatgtaatggaccgtgcctttttacggccgggtaggtttggtaaactaatttatgtcgccccgcccaacacagatgagcgtggtttgatcttgaaagctataggaaggaagtatcctgttgatgcaagtgtagatctgggtgagattggaaaatggaaggcttgtgaaaattttagcggagctgatcttgctgcactgatggatgaagctgctatggctgctcttgaagagaaagagacatcagccgagagttcagatgcatcttcgtggacaattaaagaaactcactttcaaccagcactggcaaaaatcataccatctctaacagaaaggtttttgagtgccaaaatgtcgaataacaacttcaacagatcagtgcagacacctgagaatgacttttccgaccaaccaaatttcgacgagtacttgatgtttggtgactggcttgaggaagatcctaactatgtagcttcagggtctactcagaattcggttaaccaagtaaatgatgatgattctggtggaagtagcagccaacttggaggttctactaccaatgagaaaggaagcgtactggaaaggcagcaagttcaagaaagagtcgccttcaaaatgaaatcagaggttgagattttggatgatgggttcaaatggaggaagtatgggaaaaagatggtgaagaacagcccaaatccaaggaattactacaagtgttcatgtgaaggctgcccagtgaaaaagagagttgaaagagataaagaagatccagcgaggaggaagactactgccgttgctgctgctactgatgttgcacagccattgaagcggtcgtatgacgatcaatcttggaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AAA Nucleolin_bd

Protein Analysis

974

Amino Acids

108.43

Weight (kDa)

5.75

Isoelectric Point (pI)

54.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37910
fragaria_vesca	FvH4_2g31390 FvH4_2g31390 FvH4_2g31390
malus_domestica	MD09G1249100.v1.1 MD17G1241700.v1.1
prunus_persica	Prupe.3G135900_v2.0.a1 Prupe.3G135900_v2.0.a1 Prupe.3G135900_v2.0.a1 Prupe.4G275000_v2.0.a1
pyrus_communis	pycom09g16600 pycom17g24480
rosa_chinensis	RchiOBHm_Chr6g0311431
rosa_laevigata	RLG00000010407
rosa_multiflora	Rmu_sc0006915.1_g000008 Rmu_sc0013619.1_g000001 Rmu_sc0015790.1_g000001 Rmu_sc0037156.1_g000001
rosa_roxburghii	Rroxscaffold_7G00157620
rosa_rugosa	Rorug06G0389000
rosa_samantha	Rh6AG503300 Rh6BG513900 Rh6DG505900
rosa_wichuraiana	Rw6G043830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	177
Acc36I	ACCTGC	1 cut(s)	1427
AccB1I	GGYRCC	1 cut(s)	2054
AccB7I	CCANNNNNTGG	2 cut(s)	848, 878
AccBSI	CCGCTC	2 cut(s)	258, 1987
AccI	GTMKAC	3 cut(s)	452, 530, 2549
AccII	CGCG	2 cut(s)	147, 467
AccIII	TCCGGA	1 cut(s)	1878
AclWI	GGATC	5 cut(s)	530, 543, 1137, 2519, 2828
AcoI	YGGCCR	4 cut(s)	288, 942, 1425, 2096
AcsI	RAATTY	8 cut(s)	1165, 1306, 1664, 1715, 1726, 2239, 2482, 2557
AcuI	CTGAAG	4 cut(s)	969, 999, 1539, 2526
AfaI	GTAC	3 cut(s)	1149, 2495, 2643
AfeI	AGCGCT	1 cut(s)	233
AgeI	ACCGGT	1 cut(s)	247
AhdI	GACNNNNNGTC	1 cut(s)	112
AjnI	CCWGG	4 cut(s)	604, 871, 1261, 1393
AjuI	GAANNNNNNNTTGG	2 cut(s)	875, 907
AleI	CACNNNNGTG	2 cut(s)	874, 950
AloI	GAACNNNNNNTCC	4 cut(s)	1860, 1892, 2699, 2731
Alw21I	GWGCWC	2 cut(s)	316, 695
Alw26I	GTCTC	7 cut(s)	205, 328, 402, 908, 961, 1727, 2300
AlwI	GGATC	5 cut(s)	530, 543, 1137, 2519, 2828
Ama87I	CYCGRG	1 cut(s)	958
Aor13HI	TCCGGA	1 cut(s)	1878
Aor51HI	AGCGCT	1 cut(s)	233
ApaI	GGGCCC	1 cut(s)	1835
ApoI	RAATTY	8 cut(s)	1165, 1306, 1664, 1715, 1726, 2239, 2482, 2557
AsiGI	ACCGGT	1 cut(s)	247
Asp700I	GAANNNNTTC	2 cut(s)	1566, 1664
AspLEI	GCGC	2 cut(s)	234, 358
AspS9I	GGNCC	9 cut(s)	114, 644, 731, 866, 1386, 1754, 1831, 1832, 2080
AsuC2I	CCSGG	4 cut(s)	9, 158, 1761, 2100
AsuHPI	GGTGA	5 cut(s)	727, 1902, 2222, 2519, 2758
AsuII	TTCGAA	1 cut(s)	1064
AvaI	CYCGRG	1 cut(s)	958
AvaII	GGWCC	4 cut(s)	114, 866, 1386, 2080
BaeGI	GKGCMC	1 cut(s)	1835
BamHI	GGATCC	1 cut(s)	535
BanI	GGYRCC	1 cut(s)	2054
BanII	GRGCYC	2 cut(s)	695, 1835
BarI	GAAGNNNNNNTAC	2 cut(s)	972, 1004
BauI	CACGAG	1 cut(s)	1893
BbsI	GAAGAC	2 cut(s)	890, 2855
Bbv12I	GWGCWC	2 cut(s)	316, 695
BccI	CCATC	8 cut(s)	147, 409, 1547, 2012, 2263, 2395, 2705, 2737
BceAI	ACGGC	5 cut(s)	379, 490, 1775, 2111, 2843
BcgI	CGANNNNNNTGC	2 cut(s)	1044, 1078
BciT130I	CCWGG	4 cut(s)	606, 873, 1263, 1395
BciVI	GTATCC	1 cut(s)	2193
BcnI	CCSGG	4 cut(s)	9, 158, 1761, 2100
BcoDI	GTCTC	7 cut(s)	205, 328, 402, 908, 961, 1727, 2300
BfaI	CTAG	3 cut(s)	212, 1383, 1646
BfmI	CTRYAG	2 cut(s)	338, 2169
BfoI	RGCGCY	1 cut(s)	235
BfuAI	ACCTGC	1 cut(s)	1427
BfuI	GTATCC	1 cut(s)	2193
BglI	GCCNNNNNGGC	2 cut(s)	826, 1433
BglII	AGATCT	3 cut(s)	994, 1648, 2203
BmcAI	AGTACT	1 cut(s)	2495
Bme1390I	CCNGG	8 cut(s)	9, 158, 606, 873, 1263, 1395, 1761, 2100
Bme18I	GGWCC	4 cut(s)	114, 866, 1386, 2080
BmeRI	GACNNNNNGTC	1 cut(s)	112
BmeT110I	CYCGRG	1 cut(s)	958
BmgT120I	GGNCC	9 cut(s)	114, 644, 731, 866, 1386, 1754, 1831, 1832, 2080
BmiI	GGNNCC	7 cut(s)	489, 537, 732, 1219, 1810, 1833, 2056
BmrFI	CCNGG	8 cut(s)	9, 158, 606, 873, 1263, 1395, 1761, 2100
BmrI	ACTGGG	1 cut(s)	2795
BmuI	ACTGGG	1 cut(s)	2795
BpiI	GAAGAC	2 cut(s)	890, 2855
BplI	GAGNNNNNCTC	2 cut(s)	1589, 1621
BpmI	CTGGAG	2 cut(s)	107, 791
Bpu14I	TTCGAA	1 cut(s)	1064
BpuEI	CTTGAG	4 cut(s)	158, 1337, 1675, 2537
BpuMI	CCSGG	4 cut(s)	9, 158, 1761, 2100
Bsa29I	ATCGAT	1 cut(s)	512
BsaI	GGTCTC	1 cut(s)	961
BsaJI	CCNNGG	9 cut(s)	120, 145, 558, 605, 647, 872, 1262, 1394, 2765
BsaWI	WCCGGW	2 cut(s)	247, 1878
BsaXI	ACNNNNNCTCC	8 cut(s)	101, 131, 440, 470, 479, 509, 647, 677
Bse118I	RCCGGY	3 cut(s)	247, 807, 1509
Bse1I	ACTGG	8 cut(s)	922, 1145, 1875, 1999, 2376, 2516, 2649, 2801
Bse3DI	GCAATG	3 cut(s)	388, 903, 1443
BseAI	TCCGGA	1 cut(s)	1878
BseBI	CCWGG	4 cut(s)	606, 873, 1263, 1395
BseCI	ATCGAT	1 cut(s)	512
BseDI	CCNNGG	9 cut(s)	120, 145, 558, 605, 647, 872, 1262, 1394, 2765
BseGI	GGATG	5 cut(s)	1696, 1769, 1945, 2278, 2713
BseMI	GCAATG	3 cut(s)	388, 903, 1443
BseMII	CTCAG	3 cut(s)	1692, 2448, 2567
BseNI	ACTGG	8 cut(s)	922, 1145, 1875, 1999, 2376, 2516, 2649, 2801
BseRI	GAGGAG	5 cut(s)	48, 296, 461, 788, 2857
BseSI	GKGCMC	1 cut(s)	1835
BseX3I	CGGCCG	1 cut(s)	2096
BsgI	GTGCAG	3 cut(s)	2043, 2247, 2468
Bsh1236I	CGCG	2 cut(s)	147, 467
Bsh1285I	CGRYCG	4 cut(s)	812, 1672, 2099, 2900
BshNI	GGYRCC	1 cut(s)	2054
BshTI	ACCGGT	1 cut(s)	247
BshVI	ATCGAT	1 cut(s)	512
BsiEI	CGRYCG	4 cut(s)	812, 1672, 2099, 2900
BsiHKAI	GWGCWC	2 cut(s)	316, 695
BsiHKCI	CYCGRG	1 cut(s)	958
BsmAI	GTCTC	7 cut(s)	205, 328, 402, 908, 961, 1727, 2300
BsmBI	CGTCTC	2 cut(s)	205, 402
BsmI	GAATGC	2 cut(s)	762, 921
Bso31I	GGTCTC	1 cut(s)	961
BsoBI	CYCGRG	1 cut(s)	958
Bsp119I	TTCGAA	1 cut(s)	1064
Bsp120I	GGGCCC	1 cut(s)	1831
Bsp1286I	GDGCHC	3 cut(s)	316, 695, 1835
Bsp13I	TCCGGA	1 cut(s)	1878
BspCNI	CTCAG	3 cut(s)	1693, 2449, 2566
BspDI	ATCGAT	1 cut(s)	512
BspEI	TCCGGA	1 cut(s)	1878
BspFNI	CGCG	2 cut(s)	147, 467
BspLI	GGNNCC	7 cut(s)	489, 537, 732, 1219, 1810, 1833, 2056
BspMAI	CTGCAG	1 cut(s)	342
BspMI	ACCTGC	1 cut(s)	1427
BspPI	GGATC	5 cut(s)	530, 543, 1137, 2519, 2828
BspT104I	TTCGAA	1 cut(s)	1064
BspT107I	GGYRCC	1 cut(s)	2054
BspTNI	GGTCTC	1 cut(s)	961
BsrBI	CCGCTC	2 cut(s)	258, 1987
BsrDI	GCAATG	3 cut(s)	388, 903, 1443
BsrFI	RCCGGY	3 cut(s)	247, 807, 1509
BsrI	ACTGG	8 cut(s)	922, 1145, 1875, 1999, 2376, 2516, 2649, 2801
BssAI	RCCGGY	3 cut(s)	247, 807, 1509
BssECI	CCNNGG	9 cut(s)	120, 145, 558, 605, 647, 872, 1262, 1394, 2765
BssNAI	GTATAC	1 cut(s)	531
BssSI	CACGAG	1 cut(s)	1893
BssT1I	CCWWGG	2 cut(s)	558, 2765
Bst1107I	GTATAC	1 cut(s)	531
Bst2BI	CACGAG	1 cut(s)	1893
Bst2UI	CCWGG	4 cut(s)	606, 873, 1263, 1395
Bst4CI	ACNGT	2 cut(s)	1673, 2084
Bst6I	CTCTTC	4 cut(s)	273, 324, 713, 2292
BstAPI	GCANNNNNTGC	1 cut(s)	766
BstBI	TTCGAA	1 cut(s)	1064
BstC8I	GCNNGC	5 cut(s)	288, 312, 1343, 1425, 1511
BstDEI	CTNAG	3 cut(s)	1701, 2457, 2553
BstDSI	CCRYGG	2 cut(s)	120, 145
BstEII	GGTNACC	1 cut(s)	152
BstF5I	GGATG	5 cut(s)	1696, 1769, 1945, 2278, 2713
BstFNI	CGCG	2 cut(s)	147, 467
BstH2I	RGCGCY	1 cut(s)	235
BstHHI	GCGC	2 cut(s)	234, 358
BstMAI	GTCTC	7 cut(s)	205, 328, 402, 908, 961, 1727, 2300
BstMCI	CGRYCG	4 cut(s)	812, 1672, 2099, 2900
BstNI	CCWGG	4 cut(s)	606, 873, 1263, 1395
BstNSI	RCATGY	1 cut(s)	1908
BstPI	GGTNACC	1 cut(s)	152
BstSCI	CCNGG	8 cut(s)	7, 156, 604, 871, 1261, 1393, 1759, 2098
BstSFI	CTRYAG	2 cut(s)	338, 2169
BstSLI	GKGCMC	1 cut(s)	1835
BstUI	CGCG	2 cut(s)	147, 467
BstV2I	GAAGAC	2 cut(s)	890, 2855
BstX2I	RGATCY	6 cut(s)	535, 994, 1648, 2203, 2524, 2833
BstXI	CCANNNNNNTGG	2 cut(s)	952, 1546
BstYI	RGATCY	6 cut(s)	535, 994, 1648, 2203, 2524, 2833
BstZ17I	GTATAC	1 cut(s)	531
BstZI	CGGCCG	1 cut(s)	2096
Bsu15I	ATCGAT	1 cut(s)	512
BsuI	GTATCC	1 cut(s)	2193
BsuTUI	ATCGAT	1 cut(s)	512
BtgI	CCRYGG	2 cut(s)	120, 145
BtsCI	GGATG	5 cut(s)	1696, 1769, 1945, 2278, 2713
BtsI	GCAGTG	1 cut(s)	830
BtsIMutI	CAGTG	6 cut(s)	830, 945, 2264, 2369, 2451, 2808
BveI	ACCTGC	1 cut(s)	1427
Cac8I	GCNNGC	5 cut(s)	288, 312, 1343, 1425, 1511
CfoI	GCGC	2 cut(s)	234, 358
Cfr10I	RCCGGY	3 cut(s)	247, 807, 1509
Cfr13I	GGNCC	9 cut(s)	114, 644, 731, 866, 1386, 1754, 1831, 1832, 2080
Cfr42I	CCGCGG	1 cut(s)	148
ClaI	ATCGAT	1 cut(s)	512
CseI	GACGC	2 cut(s)	167, 473
Csp6I	GTAC	3 cut(s)	1148, 2494, 2642
CspAI	ACCGGT	1 cut(s)	247
CviAII	CATG	6 cut(s)	899, 1126, 1450, 1905, 1914, 2787
CviQI	GTAC	3 cut(s)	1148, 2494, 2642
DdeI	CTNAG	3 cut(s)	1701, 2457, 2553
DrdI	GACNNNNNNGTC	1 cut(s)	177
DriI	GACNNNNNGTC	1 cut(s)	112
DseDI	GACNNNNNNGTC	1 cut(s)	177
EaeI	YGGCCR	4 cut(s)	288, 942, 1425, 2096
EagI	CGGCCG	1 cut(s)	2096
Eam1104I	CTCTTC	4 cut(s)	273, 324, 713, 2292
Eam1105I	GACNNNNNGTC	1 cut(s)	112
EarI	CTCTTC	4 cut(s)	273, 324, 713, 2292
EciI	GGCGGA	4 cut(s)	39, 319, 581, 1169
Ecl136II	GAGCTC	1 cut(s)	693
EclXI	CGGCCG	1 cut(s)	2096
Eco130I	CCWWGG	2 cut(s)	558, 2765
Eco147I	AGGCCT	2 cut(s)	1231, 1261
Eco24I	GRGCYC	2 cut(s)	695, 1835
Eco31I	GGTCTC	1 cut(s)	961
Eco47I	GGWCC	4 cut(s)	114, 866, 1386, 2080
Eco47III	AGCGCT	1 cut(s)	233
Eco52I	CGGCCG	1 cut(s)	2096
Eco53kI	GAGCTC	1 cut(s)	693
Eco57I	CTGAAG	4 cut(s)	969, 999, 1539, 2526
Eco88I	CYCGRG	1 cut(s)	958
Eco91I	GGTNACC	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	693
EcoO109I	RGGNCCY	3 cut(s)	114, 1831, 1832
EcoO65I	GGTNACC	1 cut(s)	152
EcoRI	GAATTC	2 cut(s)	1664, 2557
EcoRII	CCWGG	4 cut(s)	604, 871, 1261, 1393
EcoT14I	CCWWGG	2 cut(s)	558, 2765
EcoT22I	ATGCAT	2 cut(s)	1919, 2332
EcoT38I	GRGCYC	2 cut(s)	695, 1835
ErhI	CCWWGG	2 cut(s)	558, 2765
Esp3I	CGTCTC	2 cut(s)	205, 402
FaeI	CATG	6 cut(s)	902, 1129, 1453, 1908, 1917, 2790
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FatI	CATG	6 cut(s)	898, 1125, 1449, 1904, 1913, 2786
FauI	CCCGC	7 cut(s)	513, 542, 603, 625, 1950, 2028, 2139
FblI	GTMKAC	3 cut(s)	452, 530, 2549
FokI	GGATG	5 cut(s)	1683, 1776, 1952, 2285, 2720
FriOI	GRGCYC	2 cut(s)	695, 1835
FspBI	CTAG	3 cut(s)	212, 1383, 1646
GlaI	GCGC	2 cut(s)	233, 357
GsuI	CTGGAG	2 cut(s)	107, 791
HaeII	RGCGCY	1 cut(s)	235
HgaI	GACGC	2 cut(s)	167, 473
HhaI	GCGC	2 cut(s)	234, 358
Hin1II	CATG	6 cut(s)	902, 1129, 1453, 1908, 1917, 2790
Hin6I	GCGC	2 cut(s)	232, 356
HinP1I	GCGC	2 cut(s)	232, 356
HincII	GTYRAC	3 cut(s)	136, 1243, 2566
HindII	GTYRAC	3 cut(s)	136, 1243, 2566
HpaI	GTTAAC	1 cut(s)	2566
HphI	GGTGA	5 cut(s)	727, 1902, 2222, 2519, 2758
Hpy99I	CGWCG	8 cut(s)	49, 409, 412, 415, 418, 421, 460, 2492
HpyCH4III	ACNGT	2 cut(s)	1673, 2084
HpyCH4IV	ACGT	2 cut(s)	360, 455
HpyF3I	CTNAG	3 cut(s)	1701, 2457, 2553
HpySE526I	ACGT	2 cut(s)	360, 455
Hsp92II	CATG	6 cut(s)	902, 1129, 1453, 1908, 1917, 2790
HspAI	GCGC	2 cut(s)	232, 356
Kpn2I	TCCGGA	1 cut(s)	1878
KroI	GCCGGC	1 cut(s)	1509
KroNI	GCCGGC	1 cut(s)	1511
KspAI	GTTAAC	1 cut(s)	2566
KspI	CCGCGG	1 cut(s)	148
LmnI	GCTCC	8 cut(s)	283, 487, 568, 775, 1217, 1406, 1808, 2249
MaeI	CTAG	3 cut(s)	212, 1383, 1646
MaeII	ACGT	2 cut(s)	360, 455
MaeIII	GTNAC	7 cut(s)	152, 743, 1105, 1439, 1673, 2001, 2507
MbiI	CCGCTC	2 cut(s)	258, 1987
MfeI	CAATTG	2 cut(s)	1029, 1056
MflI	RGATCY	6 cut(s)	535, 994, 1648, 2203, 2524, 2833
MhlI	GDGCHC	3 cut(s)	316, 695, 1835
MlyI	GAGTC	6 cut(s)	73, 98, 165, 458, 1166, 2679
MmeI	TCCRAC	4 cut(s)	438, 1384, 1837, 2496
Mph1103I	ATGCAT	2 cut(s)	1919, 2332
MroI	TCCGGA	1 cut(s)	1878
MroNI	GCCGGC	1 cut(s)	1509
MroXI	GAANNNNTTC	2 cut(s)	1566, 1664
MseI	TTAA	5 cut(s)	621, 1253, 1827, 2346, 2565
MslI	CAYNNNNRTG	5 cut(s)	874, 950, 1448, 1544, 2335
MspA1I	CMGCKG	2 cut(s)	147, 2032
MspR9I	CCNGG	8 cut(s)	9, 158, 606, 873, 1263, 1395, 1761, 2100
MunI	CAATTG	2 cut(s)	1029, 1056
Mva1269I	GAATGC	2 cut(s)	762, 921
MvaI	CCWGG	4 cut(s)	606, 873, 1263, 1395
MvnI	CGCG	2 cut(s)	147, 467
NaeI	GCCGGC	1 cut(s)	1511
NciI	CCSGG	4 cut(s)	9, 158, 1761, 2100
NgoMIV	GCCGGC	1 cut(s)	1509
NlaIII	CATG	6 cut(s)	902, 1129, 1453, 1908, 1917, 2790
NlaIV	GGNNCC	7 cut(s)	489, 537, 732, 1219, 1810, 1833, 2056
NmeAIII	GCCGAG	5 cut(s)	61, 672, 700, 1586, 2341
NmuCI	GTSAC	2 cut(s)	743, 2507
NsiI	ATGCAT	2 cut(s)	1919, 2332
NspI	RCATGY	1 cut(s)	1908
NspV	TTCGAA	1 cut(s)	1064
OliI	CACNNNNGTG	2 cut(s)	874, 950
PceI	AGGCCT	2 cut(s)	1231, 1261
PcsI	WCGNNNNNNNCGW	4 cut(s)	410, 413, 416, 464
PctI	GAATGC	2 cut(s)	762, 921
PdiI	GCCGGC	1 cut(s)	1511
PdmI	GAANNNNTTC	2 cut(s)	1566, 1664
PfeI	GAWTC	5 cut(s)	1282, 1321, 1475, 1602, 2585
PflMI	CCANNNNNTGG	2 cut(s)	848, 878
PfoI	TCCNGGA	1 cut(s)	1759
PinAI	ACCGGT	1 cut(s)	247
PleI	GAGTC	6 cut(s)	73, 97, 165, 457, 1166, 2678
PpsI	GAGTC	6 cut(s)	73, 97, 165, 457, 1166, 2678
PpuMI	RGGWCCY	1 cut(s)	114
Psp124BI	GAGCTC	1 cut(s)	695
Psp5II	RGGWCCY	1 cut(s)	114
Psp6I	CCWGG	4 cut(s)	604, 871, 1261, 1393
PspEI	GGTNACC	1 cut(s)	152
PspGI	CCWGG	4 cut(s)	604, 871, 1261, 1393
PspN4I	GGNNCC	7 cut(s)	489, 537, 732, 1219, 1810, 1833, 2056
PspOMI	GGGCCC	1 cut(s)	1831
PspPI	GGNCC	9 cut(s)	114, 644, 731, 866, 1386, 1754, 1831, 1832, 2080
PspPPI	RGGWCCY	1 cut(s)	114
PstI	CTGCAG	1 cut(s)	342
PsuI	RGATCY	6 cut(s)	535, 994, 1648, 2203, 2524, 2833
RsaI	GTAC	3 cut(s)	1149, 2495, 2643
RsaNI	GTAC	3 cut(s)	1148, 2494, 2642
RseI	CAYNNNNRTG	5 cut(s)	874, 950, 1448, 1544, 2335
SacI	GAGCTC	1 cut(s)	695
SacII	CCGCGG	1 cut(s)	148
SaqAI	TTAA	5 cut(s)	621, 1253, 1827, 2346, 2565
Sau96I	GGNCC	9 cut(s)	114, 644, 731, 866, 1386, 1754, 1831, 1832, 2080
ScaI	AGTACT	1 cut(s)	2495
SchI	GAGTC	6 cut(s)	73, 98, 165, 458, 1166, 2679
ScrFI	CCNGG	8 cut(s)	9, 158, 606, 873, 1263, 1395, 1761, 2100
SduI	GDGCHC	3 cut(s)	316, 695, 1835
SfcI	CTRYAG	2 cut(s)	338, 2169
Sfr303I	CCGCGG	1 cut(s)	148
SfuI	TTCGAA	1 cut(s)	1064
SgrBI	CCGCGG	1 cut(s)	148
SinI	GGWCC	4 cut(s)	114, 866, 1386, 2080
SmiMI	CAYNNNNRTG	5 cut(s)	874, 950, 1448, 1544, 2335
SmlI	CTYRAG	4 cut(s)	173, 1316, 1654, 2516
SmoI	CTYRAG	4 cut(s)	173, 1316, 1654, 2516
SseBI	AGGCCT	2 cut(s)	1231, 1261
SspMI	CTAG	3 cut(s)	212, 1383, 1646
SstI	GAGCTC	1 cut(s)	695
StuI	AGGCCT	2 cut(s)	1231, 1261
StyD4I	CCNGG	8 cut(s)	7, 156, 604, 871, 1261, 1393, 1759, 2098
StyI	CCWWGG	2 cut(s)	558, 2765
TaaI	ACNGT	2 cut(s)	1673, 2084
TaiI	ACGT	2 cut(s)	363, 458
TaqI	TCGA	9 cut(s)	236, 512, 665, 701, 1064, 1478, 1668, 2423, 2487
TatI	WGTACW	2 cut(s)	1147, 2493
TauI	GCSGC	7 cut(s)	150, 261, 549, 566, 802, 823, 2035
TfiI	GAWTC	5 cut(s)	1282, 1321, 1475, 1602, 2585
Tru1I	TTAA	5 cut(s)	621, 1253, 1827, 2346, 2565
Tru9I	TTAA	5 cut(s)	621, 1253, 1827, 2346, 2565
TscAI	CASTG	6 cut(s)	830, 952, 2271, 2376, 2451, 2808
TseFI	GTSAC	2 cut(s)	743, 2507
Tsp45I	GTSAC	2 cut(s)	743, 2507
TspGWI	ACGGA	2 cut(s)	109, 548
TspRI	CASTG	6 cut(s)	830, 952, 2271, 2376, 2451, 2808
Van91I	CCANNNNNTGG	2 cut(s)	848, 878
VpaK11BI	GGWCC	4 cut(s)	114, 866, 1386, 2080
XapI	RAATTY	8 cut(s)	1165, 1306, 1664, 1715, 1726, 2239, 2482, 2557
XceI	RCATGY	1 cut(s)	1908
XmiI	GTMKAC	3 cut(s)	452, 530, 2549
XmnI	GAANNNNTTC	2 cut(s)	1566, 1664
XspI	CTAG	3 cut(s)	212, 1383, 1646
ZrmI	AGTACT	1 cut(s)	2495
Zsp2I	ATGCAT	2 cut(s)	1919, 2332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.