Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0013969

Physical Location & Seq

Genomic Coordinates Reverse (-)

5387244 .. 5388373

Gene Structure 1130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1067700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTCTGGTGGCAACTTCAGGTCAGTAGAGTCACCTGAGACTAATGACTTTTCCGGCGACTTGAATTTTGAGTTTTCAGAGTACTTGATGATCCGCAAGTGGCTGGATGAGGATCCGAGTTTCGTAGGTTCGGAGTTTTCTGTCCAGAGTTCGGGTTTTCGAGCGAATGAAGTTGGTGAGTCTGGTGCAAGGAGCAGCCAACCTGGAGGGTCTACTATCAGAGGAGACAATGGAAGCAGCCGGGAGAGGCAGGAAGCTAGAGAGAGAGTTGCATTCAAAACAAAATCAGAGGTTGAAATATTGGATGATGGGTTCAGGTGGAGGAAGTATGGTAAAAAGAAGGTGAAAAGCAGCCCTAATCCAAGAAATTATTACAAGTGTTCAGTTGGAGGGTGCCACGTGAAAAAAAGAGTTGAGAGAGATAGGGAGGATCCAAGGTTTGTAATTACAACTTATGATGGAGTCCATAACCATCCAGGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0098542 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

162

Amino Acids

18.24

Weight (kDa)

8.53

Isoelectric Point (pI)

52.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	102 - 159	7e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26170
fragaria_vesca	FvH4_2g31400 FvH4_2g31400
malus_domestica	MD08G1067700.v1.1 MD15G1054000.v1.1
prunus_persica	Prupe.1G407500_v2.0.a1
pyrus_communis	pycom08g05640 pycom15g05090
rosa_chinensis	RchiOBHm_Chr6g0311421
rosa_laevigata	RLG00000010408
rosa_roxburghii	Rroxscaffold_7G00157630
rosa_rugosa	Rorug06G0389000
rosa_samantha	Rh6AG503200 Rh6BG513800 Rh6CG519600 Rh6DG505800
rosa_wichuraiana	Rw6G043820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	393
AccI	GTMKAC	1 cut(s)	212
AciI	CCGC	1 cut(s)	94
AclWI	GGATC	5 cut(s)	85, 107, 120, 425, 438
AcsI	RAATTY	1 cut(s)	64
AcvI	CACGTG	1 cut(s)	400
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	3 cut(s)	64, 277, 296
AjnI	CCWGG	2 cut(s)	202, 475
AloI	GAACNNNNNNTCC	2 cut(s)	296, 328
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
Alw26I	GTCTC	2 cut(s)	32, 219
AlwI	GGATC	5 cut(s)	85, 107, 120, 425, 438
AoxI	GGCC	1 cut(s)	478
ApeKI	GCWGC	3 cut(s)	195, 237, 351
ApoI	RAATTY	1 cut(s)	64
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	3 cut(s)	24, 188, 355
BamHI	GGATCC	2 cut(s)	112, 430
BanI	GGYRCC	1 cut(s)	393
BbrPI	CACGTG	1 cut(s)	400
BbvI	GCAGC	3 cut(s)	207, 249, 363
BccI	CCATC	3 cut(s)	302, 452, 480
BciT130I	CCWGG	2 cut(s)	204, 477
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	2 cut(s)	32, 219
BfaI	CTAG	1 cut(s)	258
BisI	GCNGC	3 cut(s)	196, 238, 352
BlsI	GCNGC	3 cut(s)	197, 239, 353
BmcAI	AGTACT	1 cut(s)	83
Bme1390I	CCNGG	3 cut(s)	204, 242, 477
BmiI	GGNNCC	3 cut(s)	114, 395, 432
BmrFI	CCNGG	3 cut(s)	204, 242, 477
BpmI	CTGGAG	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	242
BsaAI	YACGTR	1 cut(s)	400
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	434
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	204, 477
BseDI	CCNNGG	1 cut(s)	434
BseGI	GGATG	3 cut(s)	112, 310, 472
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	237
BseXI	GCAGC	3 cut(s)	207, 249, 363
BshFI	GGCC	1 cut(s)	480
BshNI	GGYRCC	1 cut(s)	393
BsiSI	CCGG	2 cut(s)	54, 241
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	2 cut(s)	32, 219
BsmI	GAATGC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	480
Bsp143I	GATC	3 cut(s)	90, 112, 430
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	1 cut(s)	480
BspCNI	CTCAG	1 cut(s)	28
BspLI	GGNNCC	3 cut(s)	114, 395, 432
BspPI	GGATC	5 cut(s)	85, 107, 120, 425, 438
BspT107I	GGYRCC	1 cut(s)	393
BssECI	CCNNGG	1 cut(s)	434
BssMI	GATC	3 cut(s)	90, 112, 430
BssT1I	CCWWGG	1 cut(s)	434
Bst2UI	CCWGG	2 cut(s)	204, 477
BstBAI	YACGTR	1 cut(s)	400
BstDEI	CTNAG	1 cut(s)	36
BstF5I	GGATG	3 cut(s)	112, 310, 472
BstKTI	GATC	3 cut(s)	93, 115, 433
BstMAI	GTCTC	2 cut(s)	32, 219
BstMBI	GATC	3 cut(s)	90, 112, 430
BstNI	CCWGG	2 cut(s)	204, 477
BstSCI	CCNGG	3 cut(s)	202, 240, 475
BstV1I	GCAGC	3 cut(s)	207, 249, 363
BstX2I	RGATCY	2 cut(s)	112, 430
BstYI	RGATCY	2 cut(s)	112, 430
BsuRI	GGCC	1 cut(s)	480
BtsCI	GGATG	3 cut(s)	112, 310, 472
Csp6I	GTAC	1 cut(s)	82
CviJI	RGCY	6 cut(s)	103, 198, 240, 257, 354, 480
CviKI_1	RGCY	6 cut(s)	103, 198, 240, 257, 354, 480
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	3 cut(s)	92, 114, 432
DpnII	GATC	3 cut(s)	90, 112, 430
Eco130I	CCWWGG	1 cut(s)	434
Eco147I	AGGCCT	1 cut(s)	480
Eco72I	CACGTG	1 cut(s)	400
EcoRII	CCWGG	2 cut(s)	202, 475
EcoT14I	CCWWGG	1 cut(s)	434
ErhI	CCWWGG	1 cut(s)	434
FaiI	YATR	3 cut(s)	330, 456, 468
FblI	GTMKAC	1 cut(s)	212
Fnu4HI	GCNGC	3 cut(s)	196, 238, 352
FokI	GGATG	3 cut(s)	119, 317, 459
Fsp4HI	GCNGC	3 cut(s)	196, 238, 352
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	3 cut(s)	196, 238, 352
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	480
HapII	CCGG	2 cut(s)	54, 241
HinfI	GANTC	3 cut(s)	29, 179, 462
HpaII	CCGG	2 cut(s)	54, 241
HphI	GGTGA	3 cut(s)	24, 188, 355
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	5 cut(s)	79, 117, 133, 221, 289
Hpy188III	TCNNGA	1 cut(s)	145
Hpy8I	GTNNAC	1 cut(s)	213
HpyAV	CCTTC	1 cut(s)	334
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	2 cut(s)	188, 272
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	1 cut(s)	399
Kzo9I	GATC	3 cut(s)	90, 112, 430
LmnI	GCTCC	1 cut(s)	192
Lsp1109I	GCAGC	3 cut(s)	207, 249, 363
MaeI	CTAG	1 cut(s)	258
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	1 cut(s)	30
MalI	GATC	3 cut(s)	92, 114, 432
MboI	GATC	3 cut(s)	90, 112, 430
MflI	RGATCY	2 cut(s)	112, 430
MluCI	AATT	3 cut(s)	64, 367, 444
MlyI	GAGTC	3 cut(s)	38, 188, 471
MmeI	TCCRAC	1 cut(s)	367
MnlI	CCTC	8 cut(s)	103, 200, 215, 240, 283, 315, 383, 421
MspI	CCGG	2 cut(s)	54, 241
MspR9I	CCNGG	3 cut(s)	204, 242, 477
Mva1269I	GAATGC	1 cut(s)	272
MvaI	CCWGG	2 cut(s)	204, 477
NciI	CCSGG	1 cut(s)	242
NdeII	GATC	3 cut(s)	90, 112, 430
NlaIV	GGNNCC	3 cut(s)	114, 395, 432
NmuCI	GTSAC	1 cut(s)	30
PceI	AGGCCT	1 cut(s)	480
PctI	GAATGC	1 cut(s)	272
PkrI	GCNGC	3 cut(s)	197, 239, 353
PleI	GAGTC	3 cut(s)	37, 187, 470
PmaCI	CACGTG	1 cut(s)	400
PmlI	CACGTG	1 cut(s)	400
PpsI	GAGTC	3 cut(s)	37, 187, 470
Ppu21I	YACGTR	1 cut(s)	400
Psp6I	CCWGG	2 cut(s)	202, 475
PspCI	CACGTG	1 cut(s)	400
PspGI	CCWGG	2 cut(s)	202, 475
PspN4I	GGNNCC	3 cut(s)	114, 395, 432
PsuI	RGATCY	2 cut(s)	112, 430
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SatI	GCNGC	3 cut(s)	196, 238, 352
Sau3AI	GATC	3 cut(s)	90, 112, 430
ScaI	AGTACT	1 cut(s)	83
SchI	GAGTC	3 cut(s)	38, 188, 471
ScrFI	CCNGG	3 cut(s)	204, 242, 477
Sse9I	AATT	3 cut(s)	64, 367, 444
SseBI	AGGCCT	1 cut(s)	480
SsiI	CCGC	1 cut(s)	94
SspI	AATATT	1 cut(s)	300
SspMI	CTAG	1 cut(s)	258
StuI	AGGCCT	1 cut(s)	480
StyD4I	CCNGG	3 cut(s)	202, 240, 475
StyI	CCWWGG	1 cut(s)	434
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	1 cut(s)	160
TasI	AATT	3 cut(s)	64, 367, 444
TatI	WGTACW	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	30
TseI	GCWGC	3 cut(s)	195, 237, 351
Tsp45I	GTSAC	1 cut(s)	30
TspDTI	ATGAA	1 cut(s)	183
XapI	RAATTY	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	212
XspI	CTAG	1 cut(s)	258
ZrmI	AGTACT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.