Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013969

Physical Location & Seq

Genomic Coordinates Forward (+)

1391273 .. 1391905

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00157630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTCGAATAACTTCAACAGATCAGTGCAGACACCTGAGAATGACTTTTCCGACCAACCAAATTTCGACGAGTACTTGATGTTTGGTGACTGGCTTGATGAAGATCATAACTTTGTAGCTTCAGGGTCTACTCAGAATTCGGTTAACCAAGTAAATGATGATGATTCTGGTGGAAGTAGCAGCCAACTTGGAGGTTCTACTACCAATGAGAAAGGAAGCGTACTGGAAAGGCAGCAAGTTAAAGAAAGAGTCGCCTTCAAAATGAAATCAGAGGTTGAGATTTTGGATGATGGGTTCAAATGGAGGAAGTATGGGAAAAAGATGGTGAAGAACAGCCCAAATCCAAGGAATTACTACAAGTGTTCATGTGAAGGCTGCCCAGTGAAAAAGAGAGTTGAAAGAGATAGAGAAGATCCAGCGTTTGTAATTACGACTTACGAGGGCACTCATAACCATCGGAGCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0098542 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

155

Amino Acids

17.72

Weight (kDa)

5.43

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	96 - 152	6.1e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26170
fragaria_vesca	FvH4_2g31400 FvH4_2g31400
malus_domestica	MD08G1067700.v1.1 MD15G1054000.v1.1
prunus_persica	Prupe.1G407500_v2.0.a1
pyrus_communis	pycom08g05640 pycom15g05090
rosa_chinensis	RchiOBHm_Chr6g0311421
rosa_laevigata	RLG00000010408
rosa_roxburghii	Rroxscaffold_7G00157630
rosa_rugosa	Rorug06G0389000
rosa_samantha	Rh6AG503200 Rh6BG513800 Rh6CG519600 Rh6DG505800
rosa_wichuraiana	Rw6G043820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	128
AclWI	GGATC	1 cut(s)	407
AcsI	RAATTY	2 cut(s)	61, 136
AcuI	CTGAAG	1 cut(s)	105
AfaI	GTAC	2 cut(s)	74, 222
AgsI	TTSAA	4 cut(s)	16, 259, 298, 398
AloI	GAACNNNNNNTCC	2 cut(s)	278, 310
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
AlwI	GGATC	1 cut(s)	407
ApeKI	GCWGC	3 cut(s)	180, 232, 375
ApoI	RAATTY	2 cut(s)	61, 136
Asp700I	GAANNNNTTC	1 cut(s)	11
AsuHPI	GGTGA	2 cut(s)	98, 337
BaeGI	GKGCMC	1 cut(s)	446
BbvI	GCAGC	3 cut(s)	192, 244, 362
BccI	CCATC	3 cut(s)	284, 316, 462
BisI	GCNGC	3 cut(s)	181, 233, 376
BlsI	GCNGC	3 cut(s)	182, 234, 377
BmcAI	AGTACT	1 cut(s)	74
BmrI	ACTGGG	1 cut(s)	374
BmuI	ACTGGG	1 cut(s)	374
BsaBI	GATNNNNATC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	344
Bse1I	ACTGG	3 cut(s)	95, 228, 380
Bse8I	GATNNNNATC	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	344
BseGI	GGATG	1 cut(s)	292
BseJI	GATNNNNATC	1 cut(s)	102
BseMII	CTCAG	2 cut(s)	27, 146
BseNI	ACTGG	3 cut(s)	95, 228, 380
BseSI	GKGCMC	1 cut(s)	446
BseXI	GCAGC	3 cut(s)	192, 244, 362
BsgI	GTGCAG	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	446
Bsp143I	GATC	3 cut(s)	20, 103, 412
BspCNI	CTCAG	2 cut(s)	28, 145
BspPI	GGATC	1 cut(s)	407
BsrI	ACTGG	3 cut(s)	95, 228, 380
BssECI	CCNNGG	1 cut(s)	344
BssMI	GATC	3 cut(s)	20, 103, 412
BssT1I	CCWWGG	1 cut(s)	344
BstDEI	CTNAG	2 cut(s)	36, 132
BstF5I	GGATG	1 cut(s)	292
BstKTI	GATC	3 cut(s)	23, 106, 415
BstMBI	GATC	3 cut(s)	20, 103, 412
BstSLI	GKGCMC	1 cut(s)	446
BstV1I	GCAGC	3 cut(s)	192, 244, 362
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BtsCI	GGATG	1 cut(s)	292
BtsIMutI	CAGTG	2 cut(s)	30, 387
CseI	GACGC	1 cut(s)	451
Csp6I	GTAC	2 cut(s)	73, 221
CviAII	CATG	1 cut(s)	366
CviJI	RGCY	5 cut(s)	94, 119, 183, 336, 375
CviKI_1	RGCY	5 cut(s)	94, 119, 183, 336, 375
CviQI	GTAC	2 cut(s)	73, 221
DdeI	CTNAG	2 cut(s)	36, 132
DpnI	GATC	3 cut(s)	22, 105, 414
DpnII	GATC	3 cut(s)	20, 103, 412
Eco130I	CCWWGG	1 cut(s)	344
Eco57I	CTGAAG	1 cut(s)	105
EcoRI	GAATTC	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	344
ErhI	CCWWGG	1 cut(s)	344
FaeI	CATG	1 cut(s)	369
FaiI	YATR	4 cut(s)	108, 312, 367, 450
FatI	CATG	1 cut(s)	365
FblI	GTMKAC	1 cut(s)	128
Fnu4HI	GCNGC	3 cut(s)	181, 233, 376
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	3 cut(s)	181, 233, 376
GluI	GCNGC	3 cut(s)	181, 233, 376
HgaI	GACGC	1 cut(s)	451
Hin1II	CATG	1 cut(s)	369
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	2 cut(s)	164, 249
HpaI	GTTAAC	1 cut(s)	145
HphI	GGTGA	2 cut(s)	98, 337
Hpy166II	GTNNAC	2 cut(s)	129, 145
Hpy188I	TCNGA	5 cut(s)	52, 135, 271, 459, 467
Hpy8I	GTNNAC	2 cut(s)	129, 145
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	2 cut(s)	265, 365
HpyCH4V	TGCA	1 cut(s)	28
HpyF3I	CTNAG	2 cut(s)	36, 132
Hsp92II	CATG	1 cut(s)	369
KspAI	GTTAAC	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	20, 103, 412
LmnI	GCTCC	1 cut(s)	459
LpnPI	CCDG	7 cut(s)	48, 76, 108, 153, 209, 393, 429
Lsp1109I	GCAGC	3 cut(s)	192, 244, 362
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	3 cut(s)	22, 105, 414
MboI	GATC	3 cut(s)	20, 103, 412
MboII	GAAGA	3 cut(s)	113, 340, 422
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	1 cut(s)	446
MluCI	AATT	4 cut(s)	61, 136, 349, 426
MlyI	GAGTC	1 cut(s)	258
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	4 cut(s)	185, 265, 297, 433
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	2 cut(s)	144, 240
NdeII	GATC	3 cut(s)	20, 103, 412
NlaIII	CATG	1 cut(s)	369
NmuCI	GTSAC	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	3 cut(s)	182, 234, 377
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
PsuI	RGATCY	1 cut(s)	412
RsaI	GTAC	2 cut(s)	74, 222
RsaNI	GTAC	2 cut(s)	73, 221
SaqAI	TTAA	2 cut(s)	144, 240
SatI	GCNGC	3 cut(s)	181, 233, 376
Sau3AI	GATC	3 cut(s)	20, 103, 412
ScaI	AGTACT	1 cut(s)	74
SchI	GAGTC	1 cut(s)	258
SduI	GDGCHC	1 cut(s)	446
SetI	ASST	4 cut(s)	37, 121, 196, 276
Sse9I	AATT	4 cut(s)	61, 136, 349, 426
StyI	CCWWGG	1 cut(s)	344
TaqI	TCGA	2 cut(s)	5, 66
TasI	AATT	4 cut(s)	61, 136, 349, 426
TatI	WGTACW	1 cut(s)	72
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	2 cut(s)	144, 240
Tru9I	TTAA	2 cut(s)	144, 240
TscAI	CASTG	2 cut(s)	30, 387
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	3 cut(s)	180, 232, 375
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	3 cut(s)	114, 278, 354
TspRI	CASTG	2 cut(s)	30, 387
XapI	RAATTY	2 cut(s)	61, 136
XmiI	GTMKAC	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	11
ZrmI	AGTACT	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.