Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013969

Physical Location & Seq

Genomic Coordinates Forward (+)

3683177 .. 3684465

Gene Structure 1289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1054000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTCTGGTGGCAACTTCAGGTCAGTAGAGTCACCTGAGACTAACGACTTTTCCAACAACTCGAATTTTGAGTTTTCGGAGTACTTGATGATCGGCGAGTGGCTCGATGAAGATCCGAGTTCCGTGGCTTCGGAGTTATCTGTCCAGAATTCGGGTTTTCGAGCAAATGAAGCTGATGACTCTGGTGCAGGGAGCAGCCAACATGGATTGTCTACTAGCAGAGGAGAGAGTGGAAGCAGCCGGGAGAGGCAGGAAACTAGAGAGAGAGTTGCATTCAAAACAAAATCAGAGGTTGAAATATTGGATGATGGGTTCAAGTGGAGGAAGTATGGTAAAAAGGTGGTGAAAAACAGCCCTCATCCAAGGAATTACTACAAGTGCTCAGTTGAAGGGTGCCTTGTGAAAAAGAGAGTTGAAAGAGATAGAGAGGATCCAAGGTTTGTAATTACAACTTATGAGGGTGTCCATAACCATCCAGGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0098542 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

162

Amino Acids

18.18

Weight (kDa)

5.65

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	102 - 159	8.5e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26170
fragaria_vesca	FvH4_2g31400 FvH4_2g31400
malus_domestica	MD08G1067700.v1.1 MD15G1054000.v1.1
prunus_persica	Prupe.1G407500_v2.0.a1
pyrus_communis	pycom08g05640 pycom15g05090
rosa_chinensis	RchiOBHm_Chr6g0311421
rosa_laevigata	RLG00000010408
rosa_roxburghii	Rroxscaffold_7G00157630
rosa_rugosa	Rorug06G0389000
rosa_samantha	Rh6AG503200 Rh6BG513800 Rh6CG519600 Rh6DG505800
rosa_wichuraiana	Rw6G043820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	393
AccI	GTMKAC	1 cut(s)	212
AclWI	GGATC	3 cut(s)	107, 425, 438
AcsI	RAATTY	2 cut(s)	64, 148
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	5 cut(s)	277, 296, 316, 389, 416
AjnI	CCWGG	1 cut(s)	475
AloI	GAACNNNNNNTCC	2 cut(s)	296, 328
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Alw21I	GWGCWC	1 cut(s)	383
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	3 cut(s)	107, 425, 438
AoxI	GGCC	1 cut(s)	478
ApeKI	GCWGC	2 cut(s)	195, 237
ApoI	RAATTY	2 cut(s)	64, 148
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	24, 355
BamHI	GGATCC	1 cut(s)	430
BanI	GGYRCC	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	383
BbvI	GCAGC	2 cut(s)	207, 249
BccI	CCATC	2 cut(s)	302, 480
BciT130I	CCWGG	1 cut(s)	477
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	2 cut(s)	216, 258
BisI	GCNGC	2 cut(s)	196, 238
BlsI	GCNGC	2 cut(s)	197, 239
BmcAI	AGTACT	1 cut(s)	83
Bme1390I	CCNGG	2 cut(s)	242, 477
BmiI	GGNNCC	2 cut(s)	395, 432
BmrFI	CCNGG	2 cut(s)	242, 477
BpuMI	CCSGG	1 cut(s)	242
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	3 cut(s)	123, 362, 434
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	3 cut(s)	123, 362, 434
BseGI	GGATG	3 cut(s)	310, 358, 472
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMII	CTCAG	2 cut(s)	27, 396
BseRI	GAGGAG	1 cut(s)	237
BseXI	GCAGC	2 cut(s)	207, 249
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	480
BshNI	GGYRCC	1 cut(s)	393
BsiHKAI	GWGCWC	1 cut(s)	383
BsiSI	CCGG	1 cut(s)	241
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	480
Bsp1286I	GDGCHC	1 cut(s)	383
Bsp143I	GATC	3 cut(s)	90, 112, 430
BspANI	GGCC	1 cut(s)	480
BspCNI	CTCAG	2 cut(s)	28, 395
BspLI	GGNNCC	2 cut(s)	395, 432
BspPI	GGATC	3 cut(s)	107, 425, 438
BspT107I	GGYRCC	1 cut(s)	393
BssECI	CCNNGG	3 cut(s)	123, 362, 434
BssMI	GATC	3 cut(s)	90, 112, 430
BssT1I	CCWWGG	2 cut(s)	362, 434
Bst2UI	CCWGG	1 cut(s)	477
BstDEI	CTNAG	2 cut(s)	36, 382
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	3 cut(s)	310, 358, 472
BstKTI	GATC	3 cut(s)	93, 115, 433
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	3 cut(s)	90, 112, 430
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	477
BstSCI	CCNGG	2 cut(s)	240, 475
BstV1I	GCAGC	2 cut(s)	207, 249
BstX2I	RGATCY	2 cut(s)	112, 430
BstYI	RGATCY	2 cut(s)	112, 430
BsuRI	GGCC	1 cut(s)	480
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	3 cut(s)	310, 358, 472
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	7 cut(s)	103, 128, 173, 198, 240, 354, 480
CviKI_1	RGCY	7 cut(s)	103, 128, 173, 198, 240, 354, 480
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	2 cut(s)	36, 382
DpnI	GATC	3 cut(s)	92, 114, 432
DpnII	GATC	3 cut(s)	90, 112, 430
Eco130I	CCWWGG	2 cut(s)	362, 434
Eco147I	AGGCCT	1 cut(s)	480
EcoRI	GAATTC	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	475
EcoT14I	CCWWGG	2 cut(s)	362, 434
ErhI	CCWWGG	2 cut(s)	362, 434
FaeI	CATG	1 cut(s)	206
FaiI	YATR	4 cut(s)	204, 330, 456, 468
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FatI	CATG	1 cut(s)	202
FblI	GTMKAC	1 cut(s)	212
Fnu4HI	GCNGC	2 cut(s)	196, 238
FokI	GGATG	3 cut(s)	317, 345, 459
Fsp4HI	GCNGC	2 cut(s)	196, 238
FspBI	CTAG	2 cut(s)	216, 258
GluI	GCNGC	2 cut(s)	196, 238
HaeIII	GGCC	1 cut(s)	480
HapII	CCGG	1 cut(s)	241
Hin1II	CATG	1 cut(s)	206
HinfI	GANTC	2 cut(s)	29, 179
HpaII	CCGG	1 cut(s)	241
HphI	GGTGA	2 cut(s)	24, 355
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	4 cut(s)	79, 117, 133, 289
Hpy188III	TCNNGA	1 cut(s)	145
Hpy8I	GTNNAC	1 cut(s)	213
HpyAV	CCTTC	1 cut(s)	383
HpyCH4V	TGCA	2 cut(s)	188, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	2 cut(s)	36, 382
Hsp92II	CATG	1 cut(s)	206
Kzo9I	GATC	3 cut(s)	90, 112, 430
LmnI	GCTCC	1 cut(s)	192
LpnPI	CCDG	8 cut(s)	4, 48, 158, 168, 174, 236, 254, 462
Lsp1109I	GCAGC	2 cut(s)	207, 249
MaeI	CTAG	2 cut(s)	216, 258
MaeIII	GTNAC	1 cut(s)	30
MalI	GATC	3 cut(s)	92, 114, 432
MboI	GATC	3 cut(s)	90, 112, 430
MboII	GAAGA	1 cut(s)	122
MflI	RGATCY	2 cut(s)	112, 430
MhlI	GDGCHC	1 cut(s)	383
MluCI	AATT	4 cut(s)	64, 148, 367, 444
MlyI	GAGTC	2 cut(s)	38, 173
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	7 cut(s)	215, 240, 283, 315, 366, 421, 451
MspI	CCGG	1 cut(s)	241
MspR9I	CCNGG	2 cut(s)	242, 477
Mva1269I	GAATGC	1 cut(s)	272
MvaI	CCWGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	1 cut(s)	170
NciI	CCSGG	1 cut(s)	242
NdeII	GATC	3 cut(s)	90, 112, 430
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	2 cut(s)	395, 432
NmuCI	GTSAC	1 cut(s)	30
PceI	AGGCCT	1 cut(s)	480
PctI	GAATGC	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	197, 239
PleI	GAGTC	2 cut(s)	37, 173
PpsI	GAGTC	2 cut(s)	37, 173
Psp6I	CCWGG	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	2 cut(s)	395, 432
PsuI	RGATCY	2 cut(s)	112, 430
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SatI	GCNGC	2 cut(s)	196, 238
Sau3AI	GATC	3 cut(s)	90, 112, 430
ScaI	AGTACT	1 cut(s)	83
SchI	GAGTC	2 cut(s)	38, 173
ScrFI	CCNGG	2 cut(s)	242, 477
SduI	GDGCHC	1 cut(s)	383
SetI	ASST	6 cut(s)	23, 37, 175, 294, 342, 440
Sse9I	AATT	4 cut(s)	64, 148, 367, 444
SseBI	AGGCCT	1 cut(s)	480
SspI	AATATT	1 cut(s)	300
SspMI	CTAG	2 cut(s)	216, 258
StuI	AGGCCT	1 cut(s)	480
StyD4I	CCNGG	2 cut(s)	240, 475
StyI	CCWWGG	2 cut(s)	362, 434
TaqI	TCGA	3 cut(s)	62, 105, 160
TasI	AATT	4 cut(s)	64, 148, 367, 444
TatI	WGTACW	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	30
TseI	GCWGC	2 cut(s)	195, 237
Tsp45I	GTSAC	1 cut(s)	30
TspDTI	ATGAA	2 cut(s)	123, 183
TspGWI	ACGGA	1 cut(s)	112
XapI	RAATTY	2 cut(s)	64, 148
XmiI	GTMKAC	1 cut(s)	212
XspI	CTAG	2 cut(s)	216, 258
ZrmI	AGTACT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.