Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0013969

Physical Location & Seq

Genomic Coordinates Reverse (-)

70879775 .. 70880417

Gene Structure 643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG513800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTCGAATAACAACTTCAACAGATCAGTGCAGACATCTGAGAATGACTTTTCCGACCAACCAAATTTCGACGAGTACTTGATGTTTGGTGACTGGATTGATGAAGATCATAACTATGTAGCTTCAGGGTCTACTCAGAATTCGGTTAACCAAGTAAATGATGATGATTCTGGTGGAAGTAGCAGCCAACTTGGAGGTTCTACTACCAATGAGAACGGAAGCGTACTGGAAAGGCAGCAAGTTAGAGAAAGAGTCGCCTTCAAAATGAAATCAGAGGTTGAGATTTTGGATGATGGGTTCAAATGGAGGAAGTATGGGAAAAAGATGGTGAAGAACAGCCCAAATCCAAGGAATTACTACAAGTGTTCATGTGAAGGCTGCCCAGTGAAAAAGAGAGTTGAAAGAGATAGAGAAGATCCAGCGTTTGTAATTACGACTTACGAGGGCACTCATAACCATCGGACCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0098542 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

156

Amino Acids

17.87

Weight (kDa)

5.24

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	97 - 153	6.2e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26170
fragaria_vesca	FvH4_2g31400 FvH4_2g31400
malus_domestica	MD08G1067700.v1.1 MD15G1054000.v1.1
prunus_persica	Prupe.1G407500_v2.0.a1
pyrus_communis	pycom08g05640 pycom15g05090
rosa_chinensis	RchiOBHm_Chr6g0311421
rosa_laevigata	RLG00000010408
rosa_roxburghii	Rroxscaffold_7G00157630
rosa_rugosa	Rorug06G0389000
rosa_samantha	Rh6AG503200 Rh6BG513800 Rh6CG519600 Rh6DG505800
rosa_wichuraiana	Rw6G043820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	131
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	2 cut(s)	64, 139
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	2 cut(s)	77, 225
AgsI	TTSAA	4 cut(s)	19, 262, 301, 401
AloI	GAACNNNNNNTCC	2 cut(s)	281, 313
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
AlwI	GGATC	1 cut(s)	410
ApeKI	GCWGC	3 cut(s)	183, 235, 378
ApoI	RAATTY	2 cut(s)	64, 139
AspS9I	GGNCC	1 cut(s)	462
AsuHPI	GGTGA	2 cut(s)	101, 340
AvaII	GGWCC	1 cut(s)	462
BaeGI	GKGCMC	1 cut(s)	449
BbvI	GCAGC	3 cut(s)	195, 247, 365
BccI	CCATC	3 cut(s)	287, 319, 465
BisI	GCNGC	3 cut(s)	184, 236, 379
BlsI	GCNGC	3 cut(s)	185, 237, 380
BmcAI	AGTACT	1 cut(s)	77
Bme18I	GGWCC	1 cut(s)	462
BmgT120I	GGNCC	1 cut(s)	462
BmrI	ACTGGG	1 cut(s)	377
BmuI	ACTGGG	1 cut(s)	377
BsaBI	GATNNNNATC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	347
Bse1I	ACTGG	3 cut(s)	98, 231, 383
Bse8I	GATNNNNATC	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	347
BseGI	GGATG	1 cut(s)	295
BseJI	GATNNNNATC	1 cut(s)	105
BseMII	CTCAG	2 cut(s)	30, 149
BseNI	ACTGG	3 cut(s)	98, 231, 383
BseSI	GKGCMC	1 cut(s)	449
BseXI	GCAGC	3 cut(s)	195, 247, 365
BsgI	GTGCAG	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	449
Bsp143I	GATC	3 cut(s)	23, 106, 415
BspCNI	CTCAG	2 cut(s)	31, 148
BspPI	GGATC	1 cut(s)	410
BsrI	ACTGG	3 cut(s)	98, 231, 383
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	3 cut(s)	23, 106, 415
BssT1I	CCWWGG	1 cut(s)	347
Bst4CI	ACNGT	1 cut(s)	466
BstDEI	CTNAG	2 cut(s)	39, 135
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	3 cut(s)	26, 109, 418
BstMBI	GATC	3 cut(s)	23, 106, 415
BstSLI	GKGCMC	1 cut(s)	449
BstV1I	GCAGC	3 cut(s)	195, 247, 365
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BtsCI	GGATG	1 cut(s)	295
BtsIMutI	CAGTG	2 cut(s)	33, 390
Cfr13I	GGNCC	1 cut(s)	462
CpoI	CGGWCCG	1 cut(s)	462
Csp6I	GTAC	2 cut(s)	76, 224
CspI	CGGWCCG	1 cut(s)	462
CviAII	CATG	1 cut(s)	369
CviJI	RGCY	4 cut(s)	122, 186, 339, 378
CviKI_1	RGCY	4 cut(s)	122, 186, 339, 378
CviQI	GTAC	2 cut(s)	76, 224
DdeI	CTNAG	2 cut(s)	39, 135
DpnI	GATC	3 cut(s)	25, 108, 417
DpnII	GATC	3 cut(s)	23, 106, 415
Eco130I	CCWWGG	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	462
Eco57I	CTGAAG	1 cut(s)	108
EcoRI	GAATTC	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	347
FaeI	CATG	1 cut(s)	372
FaiI	YATR	5 cut(s)	111, 117, 315, 370, 453
FatI	CATG	1 cut(s)	368
FblI	GTMKAC	1 cut(s)	131
Fnu4HI	GCNGC	3 cut(s)	184, 236, 379
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	3 cut(s)	184, 236, 379
GluI	GCNGC	3 cut(s)	184, 236, 379
Hin1II	CATG	1 cut(s)	372
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	2 cut(s)	167, 252
HpaI	GTTAAC	1 cut(s)	148
HphI	GGTGA	2 cut(s)	101, 340
Hpy166II	GTNNAC	2 cut(s)	132, 148
Hpy188I	TCNGA	6 cut(s)	40, 55, 138, 274, 462, 470
Hpy8I	GTNNAC	2 cut(s)	132, 148
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	2 cut(s)	268, 368
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4V	TGCA	1 cut(s)	31
HpyF3I	CTNAG	2 cut(s)	39, 135
Hsp92II	CATG	1 cut(s)	372
KspAI	GTTAAC	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	23, 106, 415
LpnPI	CCDG	6 cut(s)	79, 111, 156, 212, 396, 432
Lsp1109I	GCAGC	3 cut(s)	195, 247, 365
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	3 cut(s)	25, 108, 417
MboI	GATC	3 cut(s)	23, 106, 415
MboII	GAAGA	3 cut(s)	116, 343, 425
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	1 cut(s)	449
MluCI	AATT	4 cut(s)	64, 139, 352, 429
MlyI	GAGTC	1 cut(s)	261
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	4 cut(s)	188, 268, 300, 436
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	114
NdeII	GATC	3 cut(s)	23, 106, 415
NlaIII	CATG	1 cut(s)	372
NmuCI	GTSAC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	185, 237, 380
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PspPI	GGNCC	1 cut(s)	462
PsuI	RGATCY	1 cut(s)	415
RsaI	GTAC	2 cut(s)	77, 225
RsaNI	GTAC	2 cut(s)	76, 224
RseI	CAYNNNNRTG	1 cut(s)	114
Rsr2I	CGGWCCG	1 cut(s)	462
RsrII	CGGWCCG	1 cut(s)	462
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	3 cut(s)	184, 236, 379
Sau3AI	GATC	3 cut(s)	23, 106, 415
Sau96I	GGNCC	1 cut(s)	462
ScaI	AGTACT	1 cut(s)	77
SchI	GAGTC	1 cut(s)	261
SduI	GDGCHC	1 cut(s)	449
SetI	ASST	3 cut(s)	124, 199, 279
SinI	GGWCC	1 cut(s)	462
SmiMI	CAYNNNNRTG	1 cut(s)	114
Sse9I	AATT	4 cut(s)	64, 139, 352, 429
StyI	CCWWGG	1 cut(s)	347
TaaI	ACNGT	1 cut(s)	466
TaqI	TCGA	2 cut(s)	5, 69
TasI	AATT	4 cut(s)	64, 139, 352, 429
TatI	WGTACW	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	2 cut(s)	33, 390
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	3 cut(s)	183, 235, 378
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	3 cut(s)	117, 281, 357
TspGWI	ACGGA	1 cut(s)	231
TspRI	CASTG	2 cut(s)	33, 390
VpaK11BI	GGWCC	1 cut(s)	462
XapI	RAATTY	2 cut(s)	64, 139
XmiI	GTMKAC	1 cut(s)	131
ZrmI	AGTACT	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.