Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016504

Physical Location & Seq

Genomic Coordinates Reverse (-)

9158318 .. 9160493

Gene Structure 2176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G26210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAAGCAGGTGGCGCGTACAATCCACGCACTGTTGAAGAGGTGTTTAGGGATTTTAAGGGTCGTAGAGCTGGCATGATTAAGGCTTTAACCACTGATGTTCAGGAGTTTTTCCGACTTTGTGATCCCGAAAAGGAGAACCTTTGCCTTTACGGACATCCAAATGAGCACTGGGAAGTGAATTTGCCAGCTGAAGAGGTTCCTCCTGAGCTCCCAGAGCCTGTCTTGGGTATCAATTTTGCCAGAGACGGGATGGCGGAAAAGGATTGGTTGTCCCTTGTTGCTGTCCACAGTGATGCTTGGCTTCTTGCTGTTGCTTTCTTTTTTGGAGCCAGGTTTGGATTTGACAAAGCTGATAGGAAGAGGCTTTTCAATATGGTGAATGACCTCCCAACAATCTTTGAGGTTGTAGCTGGCACTGCTAAGAAACAAGGAAAAGATAAGTCCTCTGTTTCCAACAACAGCAGCAACAGATCCAAATCAAGCTCCAAGCGAGGATCTGAATCCCGTGCCAAGTTCTCAAAGCCGGAGCCGAAAGATGATGAGGAGGAGGAAGAGGAAGGTGTGGAAGAGGAGGATGAGGATGAGCAAGGTGAAACACAGTGTGGAGCATGTGGTGAGAGCTATGCAGCTGATGAGTTCTGGATTTGCTGTGACCTCTGTGAGATGTGGTTTCATGGAAAGTGTGTTAAGATAACACCAGCAAGAGCTGAGCACATCAAGCAATACAAGTGCCCTTCTTGCAGCAACAAAAGGGCTCGTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0035064 GO:0042221 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140030 GO:0140034 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

255

Amino Acids

28.78

Weight (kDa)

5.01

Isoelectric Point (pI)

53.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	11 - 138	8.6e-68	Alfin
PHD	PF00628	202 - 248	4e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Publication-ready

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Orthologous Genes (Group: OG0016504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26210
fragaria_vesca	FvH4_1g08141
malus_domestica	MD02G1086000.v1.1
prunus_persica	Prupe.7G203700_v2.0.a1 Prupe.7G203700_v2.0.a1
pyrus_communis	pycom02g06920 pycom15g18960
rosa_chinensis	RchiOBHm_Chr2g0094211
rosa_laevigata	RLG00000016466
rosa_multiflora	Rmu_sc0002193.1_g000007 Rmu_ssc0000070.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147370
rosa_rugosa	Rorug02G0041800
rosa_samantha	Rh2BG089700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	17
AciI	CCGC	1 cut(s)	257
AclWI	GGATC	3 cut(s)	119, 468, 505
AcsI	RAATTY	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	213
AdeI	CACNNNGTG	1 cut(s)	605
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	2 cut(s)	227, 249
AgsI	TTSAA	2 cut(s)	38, 373
AjnI	CCWGG	1 cut(s)	332
AluBI	AGCT	9 cut(s)	71, 191, 211, 353, 413, 486, 624, 632, 710
AluI	AGCT	9 cut(s)	71, 191, 211, 353, 413, 486, 624, 632, 710
Alw21I	GWGCWC	3 cut(s)	171, 213, 717
Alw26I	GTCTC	1 cut(s)	240
AlwI	GGATC	3 cut(s)	119, 468, 505
AlwNI	CAGNNNCTG	1 cut(s)	221
ApeKI	GCWGC	3 cut(s)	465, 629, 744
ApoI	RAATTY	1 cut(s)	181
Asp700I	GAANNNNTTC	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	17
AsuHPI	GGTGA	3 cut(s)	391, 605, 629
BaeGI	GKGCMC	1 cut(s)	737
BanII	GRGCYC	2 cut(s)	213, 760
Bbv12I	GWGCWC	3 cut(s)	171, 213, 717
BbvI	GCAGC	3 cut(s)	477, 641, 756
BccI	CCATC	1 cut(s)	247
BciT130I	CCWGG	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	240
BisI	GCNGC	3 cut(s)	466, 630, 745
BlpI	GCTNAGC	1 cut(s)	711
BlsI	GCNGC	3 cut(s)	467, 631, 746
Bme1390I	CCNGG	1 cut(s)	334
BmiI	GGNNCC	3 cut(s)	201, 331, 531
BmrFI	CCNGG	1 cut(s)	334
BmrI	ACTGGG	1 cut(s)	181
BmsI	GCATC	1 cut(s)	286
BmuI	ACTGGG	1 cut(s)	181
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	711
BsaBI	GATNNNNATC	2 cut(s)	478, 502
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 249
Bse1I	ACTGG	1 cut(s)	176
Bse8I	GATNNNNATC	2 cut(s)	478, 502
BseBI	CCWGG	1 cut(s)	334
BseGI	GGATG	4 cut(s)	157, 258, 583, 589
BseJI	GATNNNNATC	2 cut(s)	478, 502
BseLI	CCNNNNNNNGG	2 cut(s)	227, 249
BseMII	CTCAG	2 cut(s)	198, 702
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	3 cut(s)	560, 563, 587
BseSI	GKGCMC	1 cut(s)	737
BseXI	GCAGC	3 cut(s)	477, 641, 756
Bsh1236I	CGCG	1 cut(s)	17
BsiHKAI	GWGCWC	3 cut(s)	171, 213, 717
BsiSI	CCGG	1 cut(s)	527
BslFI	GGGAC	1 cut(s)	259
BslI	CCNNNNNNNGG	2 cut(s)	227, 249
BsmAI	GTCTC	1 cut(s)	240
BsmBI	CGTCTC	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	259
Bsp1286I	GDGCHC	5 cut(s)	171, 213, 717, 737, 760
Bsp143I	GATC	3 cut(s)	124, 473, 497
Bsp1720I	GCTNAGC	1 cut(s)	711
BspACI	CCGC	1 cut(s)	257
BspCNI	CTCAG	2 cut(s)	199, 703
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	3 cut(s)	201, 331, 531
BspPI	GGATC	3 cut(s)	119, 468, 505
BsrI	ACTGG	1 cut(s)	176
BssMI	GATC	3 cut(s)	124, 473, 497
Bst2UI	CCWGG	1 cut(s)	334
Bst4CI	ACNGT	3 cut(s)	34, 293, 603
Bst6I	CTCTTC	5 cut(s)	33, 189, 356, 549, 564
BstC8I	GCNNGC	3 cut(s)	73, 189, 415
BstDEI	CTNAG	3 cut(s)	207, 423, 711
BstF5I	GGATG	4 cut(s)	157, 258, 583, 589
BstFNI	CGCG	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	3 cut(s)	127, 476, 500
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	3 cut(s)	124, 473, 497
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 217, 419, 721, 741
BstNI	CCWGG	1 cut(s)	334
BstNSI	RCATGY	1 cut(s)	615
BstSCI	CCNGG	1 cut(s)	332
BstSLI	GKGCMC	1 cut(s)	737
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	3 cut(s)	477, 641, 756
BstX2I	RGATCY	2 cut(s)	473, 497
BstYI	RGATCY	2 cut(s)	473, 497
BtsCI	GGATG	4 cut(s)	157, 258, 583, 589
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	6 cut(s)	30, 93, 169, 298, 417, 608
Cac8I	GCNNGC	3 cut(s)	73, 189, 415
CaiI	CAGNNNCTG	1 cut(s)	221
CfoI	GCGC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	3 cut(s)	76, 612, 677
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	3 cut(s)	207, 423, 711
DpnI	GATC	3 cut(s)	126, 475, 499
DpnII	GATC	3 cut(s)	124, 473, 497
DraIII	CACNNNGTG	1 cut(s)	605
Eam1104I	CTCTTC	5 cut(s)	33, 189, 356, 549, 564
EarI	CTCTTC	5 cut(s)	33, 189, 356, 549, 564
EciI	GGCGGA	1 cut(s)	272
Ecl136II	GAGCTC	1 cut(s)	211
Eco24I	GRGCYC	2 cut(s)	213, 760
Eco53kI	GAGCTC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	213
EcoICRI	GAGCTC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	332
EcoT38I	GRGCYC	2 cut(s)	213, 760
Esp3I	CGTCTC	1 cut(s)	240
FaeI	CATG	3 cut(s)	79, 615, 680
FaiI	YATR	5 cut(s)	77, 377, 613, 627, 678
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	3 cut(s)	75, 611, 676
Fnu4HI	GCNGC	3 cut(s)	466, 630, 745
FokI	GGATG	4 cut(s)	144, 265, 590, 596
FriOI	GRGCYC	2 cut(s)	213, 760
Fsp4HI	GCNGC	3 cut(s)	466, 630, 745
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	3 cut(s)	466, 630, 745
HapII	CCGG	1 cut(s)	527
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	3 cut(s)	79, 615, 680
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HinfI	GANTC	1 cut(s)	503
HpaII	CCGG	1 cut(s)	527
HphI	GGTGA	3 cut(s)	391, 605, 629
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	2 cut(s)	116, 502
Hpy188III	TCNNGA	4 cut(s)	104, 128, 206, 643
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	2 cut(s)	554, 747
HpyCH4III	ACNGT	3 cut(s)	34, 293, 603
HpyCH4V	TGCA	2 cut(s)	629, 744
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 217, 419, 721, 741
HpyF3I	CTNAG	3 cut(s)	207, 423, 711
Hsp92II	CATG	3 cut(s)	79, 615, 680
HspAI	GCGC	1 cut(s)	15
Kzo9I	GATC	3 cut(s)	124, 473, 497
LmnI	GCTCC	5 cut(s)	216, 329, 491, 529, 608
Lsp1109I	GCAGC	3 cut(s)	477, 641, 756
LweI	GCATC	1 cut(s)	286
MaeIII	GTNAC	1 cut(s)	653
MalI	GATC	3 cut(s)	126, 475, 499
MboI	GATC	3 cut(s)	124, 473, 497
MboII	GAAGA	5 cut(s)	50, 206, 373, 566, 581
MflI	RGATCY	2 cut(s)	473, 497
MhlI	GDGCHC	5 cut(s)	171, 213, 717, 737, 760
MluCI	AATT	2 cut(s)	181, 235
MmeI	TCCRAC	2 cut(s)	139, 480
MroXI	GAANNNNTTC	1 cut(s)	198
MseI	TTAA	4 cut(s)	57, 81, 89, 690
MslI	CAYNNNNRTG	2 cut(s)	162, 294
MspA1I	CMGCKG	2 cut(s)	191, 632
MspI	CCGG	1 cut(s)	527
MspR9I	CCNGG	1 cut(s)	334
MvaI	CCWGG	1 cut(s)	334
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	5 cut(s)	14, 217, 419, 721, 741
NdeII	GATC	3 cut(s)	124, 473, 497
NlaIII	CATG	3 cut(s)	79, 615, 680
NlaIV	GGNNCC	3 cut(s)	201, 331, 531
NmuCI	GTSAC	1 cut(s)	653
NspI	RCATGY	1 cut(s)	615
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	503
PkrI	GCNGC	3 cut(s)	467, 631, 746
Psp124BI	GAGCTC	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	332
PspGI	CCWGG	1 cut(s)	332
PspN4I	GGNNCC	3 cut(s)	201, 331, 531
PstNI	CAGNNNCTG	1 cut(s)	221
PsuI	RGATCY	2 cut(s)	473, 497
PvuII	CAGCTG	2 cut(s)	191, 632
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	2 cut(s)	162, 294
SacI	GAGCTC	1 cut(s)	213
SaqAI	TTAA	4 cut(s)	57, 81, 89, 690
SatI	GCNGC	3 cut(s)	466, 630, 745
Sau3AI	GATC	3 cut(s)	124, 473, 497
ScrFI	CCNGG	1 cut(s)	334
SduI	GDGCHC	5 cut(s)	171, 213, 717, 737, 760
SfaNI	GCATC	1 cut(s)	286
SmiMI	CAYNNNNRTG	2 cut(s)	162, 294
Sse9I	AATT	2 cut(s)	181, 235
SsiI	CCGC	1 cut(s)	257
SstI	GAGCTC	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	332
TaaI	ACNGT	3 cut(s)	34, 293, 603
TasI	AATT	2 cut(s)	181, 235
TfiI	GAWTC	1 cut(s)	503
Tru1I	TTAA	4 cut(s)	57, 81, 89, 690
Tru9I	TTAA	4 cut(s)	57, 81, 89, 690
TscAI	CASTG	6 cut(s)	37, 100, 176, 298, 424, 608
TseFI	GTSAC	1 cut(s)	653
TseI	GCWGC	3 cut(s)	465, 629, 744
Tsp45I	GTSAC	1 cut(s)	653
TspDTI	ATGAA	1 cut(s)	665
TspGWI	ACGGA	1 cut(s)	168
TspRI	CASTG	6 cut(s)	37, 100, 176, 298, 424, 608
XapI	RAATTY	1 cut(s)	181
XceI	RCATGY	1 cut(s)	615
XcmI	CCANNNNNNNNNTGG	2 cut(s)	168, 250
XmnI	GAANNNNTTC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.