Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016504

Physical Location & Seq

Genomic Coordinates Reverse (-)

7210202 .. 7214714

Gene Structure 4513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46923

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGAAGGACCAGGAGCAGCCACGGCGCCGCAGCTCAGCCCGCGCACCGTTGAAGAGGTTTTCAGGGACTTCAAGTGCCGGAGAGCCGGCATAGTCAAAGCTCTCACCACCGATGTTGGTGAATTTTACGAGCAATGCGATCCTGAGAAGGAGAATCTTTGTTTGTATGGACTGCCTAATGAAGAGTGGGAAGTTAATCTACCTGCTGAGGAAGTTCCTCCAGAGCTTCCTGAACCTGCTTTGGGCATCAACTTTGCCAGAGATGGGATGAAAGAAAAGGACTGGTTGTCTCTGGTTGCAGTTCACAGTGATGCATGGTTACTTGGAGTGGCTTTCTATTTTGGTGCCAGATTCGGTTTTGACAGGGCTGACAGGAAACGTCTCTTCACTATGATAAATGATCTGCCATCAGTATTTGAGATTGTGACGGGCTCTGTGAAGAAACAGGCGATGGAGAAGTCAGCAGTTTCAAATAACAGCATCCATAAGCCAAAGTCAAGCTCTAGAGGGCGAGGCTCTGAACCAGGCAAATATTCAAAAATGCTGCCAAAGGACGAGGATGAGGGACTGGATGAGGAAGATGATGAGGAGCATGGGGAAACTATGTGTGGTTCCTGTGGGGAGAGCTATGCTGCAGATGAATTCTGGATTTGTTGCGACATTTGTGAGAAGTGGTTCCATGGAAAATGCGTGAAGATAACTCCTGCCAGAGCTGAGCACATCAAGCATTACAAGTGCCCTGCATGCAGCAACAAGAGAATGCGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

256

Amino Acids

28.78

Weight (kDa)

5.17

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	16 - 143	6.8e-68	Alfin
PHD	PF00628	203 - 249	2.1e-08	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26210
fragaria_vesca	FvH4_1g08141
malus_domestica	MD02G1086000.v1.1
prunus_persica	Prupe.7G203700_v2.0.a1 Prupe.7G203700_v2.0.a1
pyrus_communis	pycom02g06920 pycom15g18960
rosa_chinensis	RchiOBHm_Chr2g0094211
rosa_laevigata	RLG00000016466
rosa_multiflora	Rmu_sc0002193.1_g000007 Rmu_ssc0000070.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147370
rosa_rugosa	Rorug02G0041800
rosa_samantha	Rh2BG089700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	211, 244
AccB1I	GGYRCC	2 cut(s)	25, 344
AccII	CGCG	1 cut(s)	43
AciI	CCGC	3 cut(s)	29, 41, 763
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	2 cut(s)	122, 641
AcyI	GRCGYC	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	242, 264
AgsI	TTSAA	4 cut(s)	53, 73, 471, 537
AhdI	GACNNNNNGTC	1 cut(s)	286
AjnI	CCWGG	2 cut(s)	10, 523
AluBI	AGCT	6 cut(s)	34, 101, 226, 501, 627, 713
AluI	AGCT	6 cut(s)	34, 101, 226, 501, 627, 713
Alw21I	GWGCWC	1 cut(s)	720
Alw26I	GTCTC	2 cut(s)	294, 386
AlwI	GGATC	1 cut(s)	134
AoxI	GGCC	1 cut(s)	764
ApeKI	GCWGC	5 cut(s)	17, 31, 544, 632, 747
ApoI	RAATTY	2 cut(s)	122, 641
Asp700I	GAANNNNTTC	1 cut(s)	674
AspLEI	GCGC	2 cut(s)	28, 45
AspS9I	GGNCC	1 cut(s)	8
AsuHPI	GGTGA	2 cut(s)	97, 131
AvaII	GGWCC	1 cut(s)	8
BaeGI	GKGCMC	1 cut(s)	740
BanI	GGYRCC	2 cut(s)	25, 344
BanII	GRGCYC	1 cut(s)	434
BarI	GAAGNNNNNNTAC	2 cut(s)	183, 215
Bbv12I	GWGCWC	1 cut(s)	720
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	5 cut(s)	29, 43, 531, 619, 759
BccI	CCATC	3 cut(s)	257, 415, 445
BceAI	ACGGC	1 cut(s)	39
BciT130I	CCWGG	2 cut(s)	12, 525
BcoDI	GTCTC	2 cut(s)	294, 386
BfaI	CTAG	1 cut(s)	504
BfmI	CTRYAG	1 cut(s)	633
BfoI	RGCGCY	1 cut(s)	29
BfuAI	ACCTGC	2 cut(s)	211, 244
BisI	GCNGC	7 cut(s)	18, 29, 32, 545, 633, 748, 764
BlpI	GCTNAGC	2 cut(s)	35, 714
BlsI	GCNGC	7 cut(s)	19, 30, 33, 546, 634, 749, 765
Bme1390I	CCNGG	2 cut(s)	12, 525
Bme18I	GGWCC	1 cut(s)	8
BmeRI	GACNNNNNGTC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	8
BmiI	GGNNCC	4 cut(s)	27, 346, 613, 677
BmrFI	CCNGG	2 cut(s)	12, 525
BmsI	GCATC	3 cut(s)	255, 301, 489
BpmI	CTGGAG	1 cut(s)	204
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu1102I	GCTNAGC	2 cut(s)	35, 714
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	21, 679
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 264
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	2 cut(s)	287, 573
Bse3DI	GCAATG	1 cut(s)	140
BseBI	CCWGG	2 cut(s)	12, 525
BseDI	CCNNGG	2 cut(s)	21, 679
BseGI	GGATG	4 cut(s)	273, 480, 565, 577
BseLI	CCNNNNNNNGG	2 cut(s)	242, 264
BseMI	GCAATG	1 cut(s)	140
BseMII	CTCAG	4 cut(s)	49, 135, 198, 705
BseNI	ACTGG	2 cut(s)	287, 573
BseRI	GAGGAG	1 cut(s)	602
BseSI	GKGCMC	1 cut(s)	740
BseXI	GCAGC	5 cut(s)	29, 43, 531, 619, 759
Bsh1236I	CGCG	1 cut(s)	43
BshFI	GGCC	1 cut(s)	766
BshNI	GGYRCC	2 cut(s)	25, 344
BsiHKAI	GWGCWC	1 cut(s)	720
BsiSI	CCGG	2 cut(s)	79, 87
BslFI	GGGAC	2 cut(s)	80, 579
BslI	CCNNNNNNNGG	2 cut(s)	242, 264
BsmAI	GTCTC	2 cut(s)	294, 386
BsmBI	CGTCTC	1 cut(s)	386
BsmFI	GGGAC	2 cut(s)	80, 579
BsmI	GAATGC	1 cut(s)	765
BsnI	GGCC	1 cut(s)	766
Bsp1286I	GDGCHC	3 cut(s)	434, 720, 740
Bsp143I	GATC	2 cut(s)	139, 400
Bsp1720I	GCTNAGC	2 cut(s)	35, 714
Bsp19I	CCATGG	1 cut(s)	679
BspACI	CCGC	3 cut(s)	29, 41, 763
BspANI	GGCC	1 cut(s)	766
BspCNI	CTCAG	4 cut(s)	48, 136, 199, 706
BspFNI	CGCG	1 cut(s)	43
BspLI	GGNNCC	4 cut(s)	27, 346, 613, 677
BspMAI	CTGCAG	1 cut(s)	637
BspMI	ACCTGC	2 cut(s)	211, 244
BspPI	GGATC	1 cut(s)	134
BspT107I	GGYRCC	2 cut(s)	25, 344
BsrDI	GCAATG	1 cut(s)	140
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	2 cut(s)	287, 573
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	2 cut(s)	21, 679
BssMI	GATC	2 cut(s)	139, 400
BssNI	GRCGYC	1 cut(s)	26
BssT1I	CCWWGG	1 cut(s)	679
Bst2UI	CCWGG	2 cut(s)	12, 525
Bst4CI	ACNGT	2 cut(s)	49, 308
Bst6I	CTCTTC	3 cut(s)	48, 177, 389
BstACI	GRCGYC	1 cut(s)	26
BstC8I	GCNNGC	3 cut(s)	41, 88, 745
BstDEI	CTNAG	4 cut(s)	35, 144, 207, 714
BstDSI	CCRYGG	2 cut(s)	21, 679
BstF5I	GGATG	4 cut(s)	273, 480, 565, 577
BstFNI	CGCG	1 cut(s)	43
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	2 cut(s)	28, 45
BstKTI	GATC	2 cut(s)	142, 403
BstMAI	GTCTC	2 cut(s)	294, 386
BstMBI	GATC	2 cut(s)	139, 400
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 40, 724, 744
BstNI	CCWGG	2 cut(s)	12, 525
BstNSI	RCATGY	1 cut(s)	747
BstSCI	CCNGG	2 cut(s)	10, 523
BstSFI	CTRYAG	1 cut(s)	633
BstSLI	GKGCMC	1 cut(s)	740
BstUI	CGCG	1 cut(s)	43
BstV1I	GCAGC	5 cut(s)	29, 43, 531, 619, 759
BsuRI	GGCC	1 cut(s)	766
BtgI	CCRYGG	2 cut(s)	21, 679
BtgZI	GCGATG	1 cut(s)	464
BtsCI	GGATG	4 cut(s)	273, 480, 565, 577
BtsIMutI	CAGTG	1 cut(s)	313
BveI	ACCTGC	2 cut(s)	211, 244
Cac8I	GCNNGC	3 cut(s)	41, 88, 745
CfoI	GCGC	2 cut(s)	28, 45
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	8
CspCI	CAANNNNNGTGG	2 cut(s)	97, 132
CviAII	CATG	4 cut(s)	315, 593, 680, 744
DdeI	CTNAG	4 cut(s)	35, 144, 207, 714
DinI	GGCGCC	1 cut(s)	27
DpnI	GATC	2 cut(s)	141, 402
DpnII	GATC	2 cut(s)	139, 400
DriI	GACNNNNNGTC	1 cut(s)	286
Eam1104I	CTCTTC	3 cut(s)	48, 177, 389
Eam1105I	GACNNNNNGTC	1 cut(s)	286
EarI	CTCTTC	3 cut(s)	48, 177, 389
Eco130I	CCWWGG	1 cut(s)	679
Eco24I	GRGCYC	1 cut(s)	434
Eco47I	GGWCC	1 cut(s)	8
EcoRI	GAATTC	1 cut(s)	641
EcoRII	CCWGG	2 cut(s)	10, 523
EcoT14I	CCWWGG	1 cut(s)	679
EcoT22I	ATGCAT	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	434
EgeI	GGCGCC	1 cut(s)	27
EheI	GGCGCC	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	679
Esp3I	CGTCTC	1 cut(s)	386
FaeI	CATG	4 cut(s)	318, 596, 683, 747
FaqI	GGGAC	2 cut(s)	80, 579
FatI	CATG	4 cut(s)	314, 592, 679, 743
FauI	CCCGC	1 cut(s)	48
Fnu4HI	GCNGC	7 cut(s)	18, 29, 32, 545, 633, 748, 764
FokI	GGATG	4 cut(s)	280, 467, 572, 584
FriOI	GRGCYC	1 cut(s)	434
Fsp4HI	GCNGC	7 cut(s)	18, 29, 32, 545, 633, 748, 764
FspBI	CTAG	1 cut(s)	504
GlaI	GCGC	2 cut(s)	27, 44
GluI	GCNGC	7 cut(s)	18, 29, 32, 545, 633, 748, 764
GsuI	CTGGAG	1 cut(s)	204
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	766
HapII	CCGG	2 cut(s)	79, 87
HhaI	GCGC	2 cut(s)	28, 45
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	4 cut(s)	318, 596, 683, 747
Hin6I	GCGC	2 cut(s)	26, 43
HinP1I	GCGC	2 cut(s)	26, 43
HinfI	GANTC	2 cut(s)	154, 351
HpaII	CCGG	2 cut(s)	79, 87
HphI	GGTGA	2 cut(s)	97, 131
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	1 cut(s)	520
Hpy188III	TCNNGA	5 cut(s)	143, 221, 230, 504, 646
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	2 cut(s)	49, 308
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	5 cut(s)	299, 314, 635, 743, 747
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 40, 724, 744
HpyF3I	CTNAG	4 cut(s)	35, 144, 207, 714
HpySE526I	ACGT	1 cut(s)	379
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	4 cut(s)	318, 596, 683, 747
HspAI	GCGC	2 cut(s)	26, 43
KasI	GGCGCC	1 cut(s)	25
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	139, 400
LmnI	GCTCC	2 cut(s)	14, 589
Lsp1109I	GCAGC	5 cut(s)	29, 43, 531, 619, 759
LweI	GCATC	3 cut(s)	255, 301, 489
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	2 cut(s)	318, 424
MalI	GATC	2 cut(s)	141, 402
MboI	GATC	2 cut(s)	139, 400
MboII	GAAGA	6 cut(s)	65, 194, 376, 451, 590, 706
MhlI	GDGCHC	3 cut(s)	434, 720, 740
MluCI	AATT	2 cut(s)	122, 641
Mly113I	GGCGCC	1 cut(s)	26
MnlI	CCTC	9 cut(s)	49, 202, 228, 500, 506, 550, 556, 568, 580
Mph1103I	ATGCAT	1 cut(s)	316
MroNI	GCCGGC	1 cut(s)	86
MroXI	GAANNNNTTC	1 cut(s)	674
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	309
MspI	CCGG	2 cut(s)	79, 87
MspR9I	CCNGG	2 cut(s)	12, 525
Mva1269I	GAATGC	1 cut(s)	765
MvaI	CCWGG	2 cut(s)	12, 525
MvnI	CGCG	1 cut(s)	43
MwoI	GCNNNNNNNGC	4 cut(s)	23, 40, 724, 744
NaeI	GCCGGC	1 cut(s)	88
NarI	GGCGCC	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	679
NdeII	GATC	2 cut(s)	139, 400
NgoMIV	GCCGGC	1 cut(s)	86
NlaIII	CATG	4 cut(s)	318, 596, 683, 747
NlaIV	GGNNCC	4 cut(s)	27, 346, 613, 677
NmuCI	GTSAC	1 cut(s)	424
NsiI	ATGCAT	1 cut(s)	316
NspI	RCATGY	1 cut(s)	747
PaeI	GCATGC	1 cut(s)	747
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PctI	GAATGC	1 cut(s)	765
PdiI	GCCGGC	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	674
PfeI	GAWTC	2 cut(s)	154, 351
PkrI	GCNGC	7 cut(s)	19, 30, 33, 546, 634, 749, 765
PluTI	GGCGCC	1 cut(s)	29
Psp6I	CCWGG	2 cut(s)	10, 523
PspGI	CCWGG	2 cut(s)	10, 523
PspN4I	GGNNCC	4 cut(s)	27, 346, 613, 677
PspPI	GGNCC	1 cut(s)	8
PstI	CTGCAG	1 cut(s)	637
RseI	CAYNNNNRTG	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	7 cut(s)	18, 29, 32, 545, 633, 748, 764
Sau3AI	GATC	2 cut(s)	139, 400
Sau96I	GGNCC	1 cut(s)	8
ScrFI	CCNGG	2 cut(s)	12, 525
SduI	GDGCHC	3 cut(s)	434, 720, 740
SfaNI	GCATC	3 cut(s)	255, 301, 489
SfcI	CTRYAG	1 cut(s)	633
SfoI	GGCGCC	1 cut(s)	27
SinI	GGWCC	1 cut(s)	8
SmiMI	CAYNNNNRTG	1 cut(s)	309
SphI	GCATGC	1 cut(s)	747
Sse9I	AATT	2 cut(s)	122, 641
SsiI	CCGC	3 cut(s)	29, 41, 763
SspDI	GGCGCC	1 cut(s)	25
SspI	AATATT	1 cut(s)	533
SspMI	CTAG	1 cut(s)	504
StyD4I	CCNGG	2 cut(s)	10, 523
StyI	CCWWGG	1 cut(s)	679
TaaI	ACNGT	2 cut(s)	49, 308
TaiI	ACGT	1 cut(s)	382
TasI	AATT	2 cut(s)	122, 641
TauI	GCSGC	2 cut(s)	31, 766
TfiI	GAWTC	2 cut(s)	154, 351
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	5 cut(s)	17, 31, 544, 632, 747
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	3 cut(s)	195, 284, 654
TspRI	CASTG	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	8
XapI	RAATTY	2 cut(s)	122, 641
XbaI	TCTAGA	1 cut(s)	503
XceI	RCATGY	1 cut(s)	747
XmnI	GAANNNNTTC	1 cut(s)	674
XspI	CTAG	1 cut(s)	504
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.