Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0016504

Physical Location & Seq

Genomic Coordinates Reverse (-)

4309816 .. 4312815

Gene Structure 3000 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g08141.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAAGGACAAGGTGCAGCCACGGCGCAGCTCAGCCCGCGCACCGTCGAGGAGGTTTTCAGGGACTTCAAGTGCCGGCGAGCCGGCATAGTCAAAGCTCTCACCGCCGATGTTGCTGATTTTTACGAACAATGCGATCCTGAGAAGGAGAATCTCTGTTTGTATGGACTGCCTAATGAGGACTGGGAAGTTAATCTACCTGCGGAAGAAGTTCCTCCAGAGCTTCCTGAACCTGCTCTGGGCATCAACTTTGCCAGAGATGGGATGAAAGAAAAGGACTGGTTGTCTCTGGTTGCAGTTCACAGTGATGCATGGTTACTTGCAGTGGCTTTCTACTTTGGTGCCAGATTTGGTTTTGACAGGGCTGACAGGAAACGTCTCTTCACTATGATAAATGATCTGCCATCAGTTTTTGAGATTGTGACAGGCTCTGTGAAGAAACAGCCAATGGAGAAGTCAGTAGTTTCAAATAACAGCATCCATAAGCCAAAGTCAAGCTCTAGAGTGCGAGGCTCTGAACCAGGCAAATATTCAAAAATGCTGCCAAAGGACGAGGACGAGGGACTGGATGAGGAAGAAGATGAGGAGCATGGGGAAACTATGTGTGGTGCCTGTGGGGACAGCTATGCTGCGGATGAATTCTGGATTTGTTGTGACATATGTGAGAAGTGGTTCCATGGAAAATGTGTGAAGATTACTCCTGCCAGAGCTGAGCACATCAAGCATTACAAGTGCCCTGCATGCAGCAACAAGAGAATGCGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

256

Amino Acids

28.76

Weight (kDa)

5.15

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	15 - 142	4e-68	Alfin
PHD	PF00628	202 - 248	1.2e-08	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26210
fragaria_vesca	FvH4_1g08141
malus_domestica	MD02G1086000.v1.1
prunus_persica	Prupe.7G203700_v2.0.a1 Prupe.7G203700_v2.0.a1
pyrus_communis	pycom02g06920 pycom15g18960
rosa_chinensis	RchiOBHm_Chr2g0094211
rosa_laevigata	RLG00000016466
rosa_multiflora	Rmu_sc0002193.1_g000007 Rmu_ssc0000070.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147370
rosa_rugosa	Rorug02G0041800
rosa_samantha	Rh2BG089700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	208, 241
AccB1I	GGYRCC	2 cut(s)	341, 608
AccII	CGCG	1 cut(s)	40
AciI	CCGC	5 cut(s)	38, 105, 203, 632, 760
AclWI	GGATC	1 cut(s)	131
AcsI	RAATTY	1 cut(s)	638
AfiI	CCNNNNNNNGG	2 cut(s)	239, 261
AgsI	TTSAA	3 cut(s)	70, 468, 534
AhdI	GACNNNNNGTC	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	520
AluBI	AGCT	6 cut(s)	31, 98, 223, 498, 624, 710
AluI	AGCT	6 cut(s)	31, 98, 223, 498, 624, 710
Alw21I	GWGCWC	1 cut(s)	717
Alw26I	GTCTC	2 cut(s)	291, 383
AlwI	GGATC	1 cut(s)	131
AlwNI	CAGNNNCTG	1 cut(s)	431
AoxI	GGCC	1 cut(s)	761
ApeKI	GCWGC	5 cut(s)	17, 28, 541, 629, 744
ApoI	RAATTY	1 cut(s)	638
Asp700I	GAANNNNTTC	2 cut(s)	210, 671
AspLEI	GCGC	2 cut(s)	28, 42
AsuHPI	GGTGA	1 cut(s)	94
BaeGI	GKGCMC	1 cut(s)	737
BanI	GGYRCC	2 cut(s)	341, 608
BarI	GAAGNNNNNNTAC	2 cut(s)	180, 212
Bbv12I	GWGCWC	1 cut(s)	717
BbvI	GCAGC	5 cut(s)	29, 40, 528, 616, 756
BccI	CCATC	2 cut(s)	254, 412
BceAI	ACGGC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	522
BcoDI	GTCTC	2 cut(s)	291, 383
BfaI	CTAG	1 cut(s)	501
BfuAI	ACCTGC	2 cut(s)	208, 241
BisI	GCNGC	6 cut(s)	18, 29, 542, 630, 745, 761
BlpI	GCTNAGC	2 cut(s)	32, 711
BlsI	GCNGC	6 cut(s)	19, 30, 543, 631, 746, 762
Bme1390I	CCNGG	1 cut(s)	522
BmeRI	GACNNNNNGTC	1 cut(s)	283
BmiI	GGNNCC	3 cut(s)	343, 610, 674
BmrFI	CCNGG	1 cut(s)	522
BmrI	ACTGGG	1 cut(s)	193
BmsI	GCATC	3 cut(s)	252, 298, 486
BmuI	ACTGGG	1 cut(s)	193
BpmI	CTGGAG	1 cut(s)	201
Bpu1102I	GCTNAGC	2 cut(s)	32, 711
BsaJI	CCNNGG	2 cut(s)	21, 676
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 261
Bse118I	RCCGGY	2 cut(s)	75, 83
Bse1I	ACTGG	3 cut(s)	188, 284, 570
BseBI	CCWGG	1 cut(s)	522
BseDI	CCNNGG	2 cut(s)	21, 676
BseGI	GGATG	4 cut(s)	270, 477, 574, 640
BseLI	CCNNNNNNNGG	2 cut(s)	239, 261
BseMII	CTCAG	3 cut(s)	46, 132, 702
BseNI	ACTGG	3 cut(s)	188, 284, 570
BseRI	GAGGAG	2 cut(s)	65, 599
BseSI	GKGCMC	1 cut(s)	737
BseXI	GCAGC	5 cut(s)	29, 40, 528, 616, 756
BsgI	GTGCAG	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	40
BshFI	GGCC	1 cut(s)	763
BshNI	GGYRCC	2 cut(s)	341, 608
BsiHKAI	GWGCWC	1 cut(s)	717
BsiSI	CCGG	2 cut(s)	76, 84
BslFI	GGGAC	3 cut(s)	77, 576, 632
BslI	CCNNNNNNNGG	2 cut(s)	239, 261
BsmAI	GTCTC	2 cut(s)	291, 383
BsmBI	CGTCTC	1 cut(s)	383
BsmFI	GGGAC	3 cut(s)	77, 576, 632
BsmI	GAATGC	1 cut(s)	762
BsnI	GGCC	1 cut(s)	763
Bsp1286I	GDGCHC	2 cut(s)	717, 737
Bsp143I	GATC	2 cut(s)	136, 397
Bsp1720I	GCTNAGC	2 cut(s)	32, 711
Bsp19I	CCATGG	1 cut(s)	676
BspACI	CCGC	5 cut(s)	38, 105, 203, 632, 760
BspANI	GGCC	1 cut(s)	763
BspCNI	CTCAG	3 cut(s)	45, 133, 703
BspFNI	CGCG	1 cut(s)	40
BspLI	GGNNCC	3 cut(s)	343, 610, 674
BspMI	ACCTGC	2 cut(s)	208, 241
BspPI	GGATC	1 cut(s)	131
BspT107I	GGYRCC	2 cut(s)	341, 608
BsrFI	RCCGGY	2 cut(s)	75, 83
BsrI	ACTGG	3 cut(s)	188, 284, 570
BssAI	RCCGGY	2 cut(s)	75, 83
BssECI	CCNNGG	2 cut(s)	21, 676
BssMI	GATC	2 cut(s)	136, 397
BssT1I	CCWWGG	1 cut(s)	676
Bst2UI	CCWGG	1 cut(s)	522
Bst4CI	ACNGT	2 cut(s)	46, 305
Bst6I	CTCTTC	1 cut(s)	386
BstC8I	GCNNGC	5 cut(s)	38, 77, 81, 85, 742
BstDEI	CTNAG	3 cut(s)	32, 141, 711
BstDSI	CCRYGG	2 cut(s)	21, 676
BstF5I	GGATG	4 cut(s)	270, 477, 574, 640
BstFNI	CGCG	1 cut(s)	40
BstHHI	GCGC	2 cut(s)	28, 42
BstKTI	GATC	2 cut(s)	139, 400
BstMAI	GTCTC	2 cut(s)	291, 383
BstMBI	GATC	2 cut(s)	136, 397
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 37, 104, 113, 721, 741
BstNI	CCWGG	1 cut(s)	522
BstNSI	RCATGY	1 cut(s)	744
BstSCI	CCNGG	1 cut(s)	520
BstSLI	GKGCMC	1 cut(s)	737
BstUI	CGCG	1 cut(s)	40
BstV1I	GCAGC	5 cut(s)	29, 40, 528, 616, 756
BsuRI	GGCC	1 cut(s)	763
BtgI	CCRYGG	2 cut(s)	21, 676
BtsCI	GGATG	4 cut(s)	270, 477, 574, 640
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	2 cut(s)	310, 330
BveI	ACCTGC	2 cut(s)	208, 241
Cac8I	GCNNGC	5 cut(s)	38, 77, 81, 85, 742
CaiI	CAGNNNCTG	1 cut(s)	431
CfoI	GCGC	2 cut(s)	28, 42
Cfr10I	RCCGGY	2 cut(s)	75, 83
CviAII	CATG	4 cut(s)	312, 590, 677, 741
DdeI	CTNAG	3 cut(s)	32, 141, 711
DpnI	GATC	2 cut(s)	138, 399
DpnII	GATC	2 cut(s)	136, 397
DriI	GACNNNNNGTC	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	386
Eam1105I	GACNNNNNGTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	386
Eco130I	CCWWGG	1 cut(s)	676
EcoRI	GAATTC	1 cut(s)	638
EcoRII	CCWGG	1 cut(s)	520
EcoT14I	CCWWGG	1 cut(s)	676
EcoT22I	ATGCAT	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	676
Esp3I	CGTCTC	1 cut(s)	383
FaeI	CATG	4 cut(s)	315, 593, 680, 744
FaqI	GGGAC	3 cut(s)	77, 576, 632
FatI	CATG	4 cut(s)	311, 589, 676, 740
FauI	CCCGC	1 cut(s)	45
FauNDI	CATATG	1 cut(s)	659
Fnu4HI	GCNGC	6 cut(s)	18, 29, 542, 630, 745, 761
FokI	GGATG	4 cut(s)	277, 464, 581, 647
Fsp4HI	GCNGC	6 cut(s)	18, 29, 542, 630, 745, 761
FspBI	CTAG	1 cut(s)	501
GlaI	GCGC	2 cut(s)	27, 41
GluI	GCNGC	6 cut(s)	18, 29, 542, 630, 745, 761
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	763
HapII	CCGG	2 cut(s)	76, 84
HhaI	GCGC	2 cut(s)	28, 42
Hin1II	CATG	4 cut(s)	315, 593, 680, 744
Hin6I	GCGC	2 cut(s)	26, 40
HinP1I	GCGC	2 cut(s)	26, 40
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	2 cut(s)	76, 84
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	1 cut(s)	517
Hpy188III	TCNNGA	5 cut(s)	140, 218, 227, 501, 643
Hpy8I	GTNNAC	1 cut(s)	301
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	2 cut(s)	46, 305
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	6 cut(s)	17, 296, 311, 323, 740, 744
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 37, 104, 113, 721, 741
HpyF3I	CTNAG	3 cut(s)	32, 141, 711
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	4 cut(s)	315, 593, 680, 744
HspAI	GCGC	2 cut(s)	26, 40
KroI	GCCGGC	2 cut(s)	75, 83
KroNI	GCCGGC	2 cut(s)	77, 85
Kzo9I	GATC	2 cut(s)	136, 397
LmnI	GCTCC	1 cut(s)	586
Lsp1109I	GCAGC	5 cut(s)	29, 40, 528, 616, 756
LweI	GCATC	3 cut(s)	252, 298, 486
MaeI	CTAG	1 cut(s)	501
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	3 cut(s)	315, 421, 653
MalI	GATC	2 cut(s)	138, 399
MboI	GATC	2 cut(s)	136, 397
MboII	GAAGA	6 cut(s)	218, 373, 448, 587, 590, 703
MhlI	GDGCHC	2 cut(s)	717, 737
MluCI	AATT	1 cut(s)	638
MnlI	CCTC	9 cut(s)	43, 46, 172, 225, 503, 547, 553, 565, 577
Mph1103I	ATGCAT	1 cut(s)	313
MroNI	GCCGGC	2 cut(s)	75, 83
MroXI	GAANNNNTTC	2 cut(s)	210, 671
MseI	TTAA	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	306
MspI	CCGG	2 cut(s)	76, 84
MspR9I	CCNGG	1 cut(s)	522
Mva1269I	GAATGC	1 cut(s)	762
MvaI	CCWGG	1 cut(s)	522
MvnI	CGCG	1 cut(s)	40
MwoI	GCNNNNNNNGC	6 cut(s)	23, 37, 104, 113, 721, 741
NaeI	GCCGGC	2 cut(s)	77, 85
NcoI	CCATGG	1 cut(s)	676
NdeI	CATATG	1 cut(s)	659
NdeII	GATC	2 cut(s)	136, 397
NgoMIV	GCCGGC	2 cut(s)	75, 83
NlaIII	CATG	4 cut(s)	315, 593, 680, 744
NlaIV	GGNNCC	3 cut(s)	343, 610, 674
NmuCI	GTSAC	2 cut(s)	421, 653
NsiI	ATGCAT	1 cut(s)	313
NspI	RCATGY	1 cut(s)	744
PaeI	GCATGC	1 cut(s)	744
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PctI	GAATGC	1 cut(s)	762
PdiI	GCCGGC	2 cut(s)	77, 85
PdmI	GAANNNNTTC	2 cut(s)	210, 671
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	6 cut(s)	19, 30, 543, 631, 746, 762
Psp6I	CCWGG	1 cut(s)	520
PspGI	CCWGG	1 cut(s)	520
PspN4I	GGNNCC	3 cut(s)	343, 610, 674
PstNI	CAGNNNCTG	1 cut(s)	431
RseI	CAYNNNNRTG	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	6 cut(s)	18, 29, 542, 630, 745, 761
Sau3AI	GATC	2 cut(s)	136, 397
ScrFI	CCNGG	1 cut(s)	522
SduI	GDGCHC	2 cut(s)	717, 737
SfaNI	GCATC	3 cut(s)	252, 298, 486
SmiMI	CAYNNNNRTG	1 cut(s)	306
SphI	GCATGC	1 cut(s)	744
Sse9I	AATT	1 cut(s)	638
SsiI	CCGC	5 cut(s)	38, 105, 203, 632, 760
SspI	AATATT	1 cut(s)	530
SspMI	CTAG	1 cut(s)	501
StyD4I	CCNGG	1 cut(s)	520
StyI	CCWWGG	1 cut(s)	676
TaaI	ACNGT	2 cut(s)	46, 305
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	1 cut(s)	48
TasI	AATT	1 cut(s)	638
TauI	GCSGC	1 cut(s)	763
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	2 cut(s)	310, 330
TseFI	GTSAC	2 cut(s)	421, 653
TseI	GCWGC	5 cut(s)	17, 28, 541, 629, 744
Tsp45I	GTSAC	2 cut(s)	421, 653
TspDTI	ATGAA	2 cut(s)	281, 651
TspRI	CASTG	2 cut(s)	310, 330
XapI	RAATTY	1 cut(s)	638
XbaI	TCTAGA	1 cut(s)	500
XceI	RCATGY	1 cut(s)	744
XmnI	GAANNNNTTC	2 cut(s)	210, 671
XspI	CTAG	1 cut(s)	501
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.