Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0016504

Physical Location & Seq

Genomic Coordinates Reverse (-)

6752654 .. 6755137

Gene Structure 2484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1086000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGTGATGGAAGTAGAAGAAGGAGGAATAGCACCGTACAGCCCGCGCACTGTGGAGGAGGTTTTCACCGACTTCAAGGGCCGTCGAGCCGGCTTGATCAAAGCTCTCACCACTGATGTTGAACGTTTTTACCAGCAATGCGATCCTGAAAAGGAGAATCTTTGTTTGTATGGATTCCCGAATGAAGAATGGGAGGTTAATCTACCTGCTGAAGAAGTTCCTCCAGAGCTCCCGGAACCTGCTCTGGGCATCAACTTTGCCCGAGATGGAATGCAAGAAAGGGACTGGTTGTCTCTGGTAGCTGTGCACAGCGACGCGTGGTTGCTTTCAGTGGCTTTCTACTTTGGTGCCAGATTTGGTTTTGACAAGACTGAAAGGAAACGTCTCTTCACTCTGATGAATGATCTGCCATCTATCTTCGAGGTTGTGGCGGGCATTGAAAAGAGACAGTCAAAGGAGAAGTCATCAGTTTCAAATAACAGCATCCATAGGCCTAAGTCAAGCTCTAAAGGGAGAGGCTCTGAATCGGTCAAATATAGCTATGCTGCTGATGAATTCTGGATTTGCTGCGACATATGTGAGAAGTGGTTCCATGGAAAATGCGTGAAGATAACCCCAGCCAGAGCTGAGCACATCAAGCACTACAAGTGCCCGTCATGCAGCAACAAGAGAGTCCGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

228

Amino Acids

25.98

Weight (kDa)

6.25

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	17 - 144	5.1e-68	Alfin
PHD	PF00628	182 - 220	2e-08	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26210
fragaria_vesca	FvH4_1g08141
malus_domestica	MD02G1086000.v1.1
prunus_persica	Prupe.7G203700_v2.0.a1 Prupe.7G203700_v2.0.a1
pyrus_communis	pycom02g06920 pycom15g18960
rosa_chinensis	RchiOBHm_Chr2g0094211
rosa_laevigata	RLG00000016466
rosa_multiflora	Rmu_sc0002193.1_g000007 Rmu_ssc0000070.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147370
rosa_rugosa	Rorug02G0041800
rosa_samantha	Rh2BG089700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	214, 247
AccB1I	GGYRCC	1 cut(s)	347
AccII	CGCG	2 cut(s)	46, 317
AciI	CCGC	2 cut(s)	44, 431
AclI	AACGTT	1 cut(s)	124
AclWI	GGATC	1 cut(s)	137
AcsI	RAATTY	1 cut(s)	554
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	245
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	4 cut(s)	76, 122, 440, 474
AhdI	GACNNNNNGTC	1 cut(s)	289
AluBI	AGCT	6 cut(s)	104, 229, 302, 504, 540, 626
AluI	AGCT	6 cut(s)	104, 229, 302, 504, 540, 626
Alw21I	GWGCWC	3 cut(s)	231, 309, 633
Alw26I	GTCTC	3 cut(s)	297, 389, 439
Alw44I	GTGCAC	1 cut(s)	305
AlwI	GGATC	1 cut(s)	137
Ama87I	CYCGRG	1 cut(s)	261
AoxI	GGCC	2 cut(s)	79, 491
ApaLI	GTGCAC	1 cut(s)	305
ApeKI	GCWGC	3 cut(s)	545, 567, 660
ApoI	RAATTY	1 cut(s)	554
ArsI	GACNNNNNNTTYG	2 cut(s)	446, 478
Asp700I	GAANNNNTTC	2 cut(s)	216, 587
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	79
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	3 cut(s)	16, 58, 100
AvaI	CYCGRG	1 cut(s)	261
BaeGI	GKGCMC	2 cut(s)	309, 653
BanI	GGYRCC	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	231
Bbv12I	GWGCWC	3 cut(s)	231, 309, 633
BbvI	GCAGC	3 cut(s)	532, 554, 672
BccI	CCATC	2 cut(s)	260, 418
BceAI	ACGGC	1 cut(s)	66
BclI	TGATCA	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	3 cut(s)	297, 389, 439
BfuAI	ACCTGC	2 cut(s)	214, 247
BisI	GCNGC	3 cut(s)	546, 568, 661
BlpI	GCTNAGC	1 cut(s)	627
BlsI	GCNGC	3 cut(s)	547, 569, 662
Bme1390I	CCNGG	1 cut(s)	233
BmeRI	GACNNNNNGTC	1 cut(s)	289
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	3 cut(s)	237, 349, 590
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	2 cut(s)	258, 492
BpmI	CTGGAG	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	627
BpuMI	CCSGG	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	592
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	290
Bse3DI	GCAATG	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	592
BseGI	GGATG	1 cut(s)	483
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMI	GCAATG	1 cut(s)	143
BseMII	CTCAG	1 cut(s)	618
BseNI	ACTGG	1 cut(s)	290
BseRI	GAGGAG	1 cut(s)	71
BseSI	GKGCMC	2 cut(s)	309, 653
BseXI	GCAGC	3 cut(s)	532, 554, 672
BseYI	CCCAGC	1 cut(s)	616
Bsh1236I	CGCG	2 cut(s)	46, 317
BshFI	GGCC	2 cut(s)	81, 493
BshNI	GGYRCC	1 cut(s)	347
BsiHKAI	GWGCWC	3 cut(s)	231, 309, 633
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	90, 233
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	3 cut(s)	297, 389, 439
BsmBI	CGTCTC	1 cut(s)	389
BsmFI	GGGAC	1 cut(s)	296
BsmI	GAATGC	1 cut(s)	276
BsnI	GGCC	2 cut(s)	81, 493
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	4 cut(s)	231, 309, 633, 653
Bsp143I	GATC	3 cut(s)	96, 142, 403
Bsp1720I	GCTNAGC	1 cut(s)	627
Bsp19I	CCATGG	1 cut(s)	592
BspACI	CCGC	2 cut(s)	44, 431
BspANI	GGCC	2 cut(s)	81, 493
BspCNI	CTCAG	1 cut(s)	619
BspFNI	CGCG	2 cut(s)	46, 317
BspLI	GGNNCC	3 cut(s)	237, 349, 590
BspMI	ACCTGC	2 cut(s)	214, 247
BspPI	GGATC	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	290
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	592
BssMI	GATC	3 cut(s)	96, 142, 403
BssT1I	CCWWGG	1 cut(s)	592
Bst4CI	ACNGT	3 cut(s)	36, 52, 450
Bst6I	CTCTTC	1 cut(s)	392
BstC8I	GCNNGC	3 cut(s)	44, 91, 433
BstDEI	CTNAG	2 cut(s)	495, 627
BstDSI	CCRYGG	1 cut(s)	592
BstF5I	GGATG	1 cut(s)	483
BstFNI	CGCG	2 cut(s)	46, 317
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	3 cut(s)	99, 145, 406
BstMAI	GTCTC	3 cut(s)	297, 389, 439
BstMBI	GATC	3 cut(s)	96, 142, 403
BstMWI	GCNNNNNNNGC	2 cut(s)	637, 657
BstSCI	CCNGG	1 cut(s)	231
BstSLI	GKGCMC	2 cut(s)	309, 653
BstUI	CGCG	2 cut(s)	46, 317
BstV1I	GCAGC	3 cut(s)	532, 554, 672
BsuRI	GGCC	2 cut(s)	81, 493
BtgI	CCRYGG	1 cut(s)	592
BtsCI	GGATG	1 cut(s)	483
BtsIMutI	CAGTG	3 cut(s)	48, 111, 336
BveI	ACCTGC	2 cut(s)	214, 247
Cac8I	GCNNGC	3 cut(s)	44, 91, 433
CfoI	GCGC	1 cut(s)	48
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	79
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	37
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviAII	CATG	2 cut(s)	593, 657
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	2 cut(s)	495, 627
DpnI	GATC	3 cut(s)	98, 144, 405
DpnII	GATC	3 cut(s)	96, 142, 403
DriI	GACNNNNNGTC	1 cut(s)	289
Eam1104I	CTCTTC	1 cut(s)	392
Eam1105I	GACNNNNNGTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	392
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	592
Eco147I	AGGCCT	1 cut(s)	493
Eco24I	GRGCYC	1 cut(s)	231
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	261
EcoICRI	GAGCTC	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	554
EcoT14I	CCWWGG	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	592
Esp3I	CGTCTC	1 cut(s)	389
FaeI	CATG	2 cut(s)	596, 660
FaiI	YATR	8 cut(s)	171, 489, 537, 543, 575, 577, 594, 658
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	2 cut(s)	592, 656
FauI	CCCGC	2 cut(s)	51, 424
FauNDI	CATATG	1 cut(s)	575
FbaI	TGATCA	1 cut(s)	96
Fnu4HI	GCNGC	3 cut(s)	546, 568, 661
FokI	GGATG	1 cut(s)	470
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	3 cut(s)	546, 568, 661
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	3 cut(s)	546, 568, 661
GsaI	CCCAGC	1 cut(s)	620
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	81, 493
HapII	CCGG	2 cut(s)	90, 233
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	2 cut(s)	596, 660
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HinfI	GANTC	4 cut(s)	157, 174, 524, 672
HpaII	CCGG	2 cut(s)	90, 233
HphI	GGTGA	3 cut(s)	16, 58, 100
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	2 cut(s)	396, 523
Hpy188III	TCNNGA	4 cut(s)	146, 178, 224, 559
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	2 cut(s)	87, 317
HpyAV	CCTTC	1 cut(s)	14
HpyCH4III	ACNGT	3 cut(s)	36, 52, 450
HpyCH4IV	ACGT	2 cut(s)	124, 382
HpyCH4V	TGCA	3 cut(s)	274, 307, 660
HpyF10VI	GCNNNNNNNGC	2 cut(s)	637, 657
HpyF3I	CTNAG	2 cut(s)	495, 627
HpySE526I	ACGT	2 cut(s)	124, 382
Hsp92II	CATG	2 cut(s)	596, 660
HspAI	GCGC	1 cut(s)	46
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	96
Kzo9I	GATC	3 cut(s)	96, 142, 403
LmnI	GCTCC	1 cut(s)	234
Lsp1109I	GCAGC	3 cut(s)	532, 554, 672
LweI	GCATC	2 cut(s)	258, 492
MaeII	ACGT	2 cut(s)	124, 382
MalI	GATC	3 cut(s)	98, 144, 405
MboI	GATC	3 cut(s)	96, 142, 403
MboII	GAAGA	6 cut(s)	29, 197, 224, 379, 409, 619
MhlI	GDGCHC	4 cut(s)	231, 309, 633, 653
MluCI	AATT	1 cut(s)	554
MluI	ACGCGT	1 cut(s)	315
MlyI	GAGTC	1 cut(s)	681
MnlI	CCTC	7 cut(s)	17, 49, 52, 187, 231, 415, 509
MroNI	GCCGGC	1 cut(s)	89
MroXI	GAANNNNTTC	2 cut(s)	216, 587
MseI	TTAA	1 cut(s)	198
MslI	CAYNNNNRTG	1 cut(s)	395
MspI	CCGG	2 cut(s)	90, 233
MspR9I	CCNGG	1 cut(s)	233
Mva1269I	GAATGC	1 cut(s)	276
MvnI	CGCG	2 cut(s)	46, 317
MwoI	GCNNNNNNNGC	2 cut(s)	637, 657
NaeI	GCCGGC	1 cut(s)	91
NciI	CCSGG	1 cut(s)	233
NcoI	CCATGG	1 cut(s)	592
NdeI	CATATG	1 cut(s)	575
NdeII	GATC	3 cut(s)	96, 142, 403
NgoMIV	GCCGGC	1 cut(s)	89
NlaIII	CATG	2 cut(s)	596, 660
NlaIV	GGNNCC	3 cut(s)	237, 349, 590
PceI	AGGCCT	1 cut(s)	493
PctI	GAATGC	1 cut(s)	276
PdiI	GCCGGC	1 cut(s)	91
PdmI	GAANNNNTTC	2 cut(s)	216, 587
PfeI	GAWTC	3 cut(s)	157, 174, 524
PfoI	TCCNGGA	1 cut(s)	231
PkrI	GCNGC	3 cut(s)	547, 569, 662
PleI	GAGTC	1 cut(s)	680
PpsI	GAGTC	1 cut(s)	680
Psp124BI	GAGCTC	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	124
PspFI	CCCAGC	1 cut(s)	616
PspN4I	GGNNCC	3 cut(s)	237, 349, 590
PspPI	GGNCC	1 cut(s)	79
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	395
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	3 cut(s)	546, 568, 661
Sau3AI	GATC	3 cut(s)	96, 142, 403
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	681
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	4 cut(s)	231, 309, 633, 653
SfaNI	GCATC	2 cut(s)	258, 492
SmiMI	CAYNNNNRTG	1 cut(s)	395
Sse9I	AATT	1 cut(s)	554
SseBI	AGGCCT	1 cut(s)	493
SsiI	CCGC	2 cut(s)	44, 431
SstI	GAGCTC	1 cut(s)	231
StuI	AGGCCT	1 cut(s)	493
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	1 cut(s)	592
TaaI	ACNGT	3 cut(s)	36, 52, 450
TaiI	ACGT	2 cut(s)	127, 385
TaqI	TCGA	2 cut(s)	85, 420
TaqII	GACCGA	1 cut(s)	517
TasI	AATT	1 cut(s)	554
TfiI	GAWTC	3 cut(s)	157, 174, 524
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	3 cut(s)	55, 118, 336
TseI	GCWGC	3 cut(s)	545, 567, 660
TspDTI	ATGAA	3 cut(s)	198, 413, 567
TspGWI	ACGGA	1 cut(s)	665
TspRI	CASTG	3 cut(s)	55, 118, 336
VneI	GTGCAC	1 cut(s)	305
XapI	RAATTY	1 cut(s)	554
XmnI	GAANNNNTTC	2 cut(s)	216, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.