Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0016504

Physical Location & Seq

Genomic Coordinates Reverse (-)

4796735 .. 4798825

Gene Structure 2091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g06920.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGTGATGGAAGTAGAAGGAGGAATAGCACCGTACAGCCCCCGCACTGTGGAGGAGGTTTTCACCGATTTCAAGGGCCGTCGAGCCGGCTTGATCAAAGCTCTCACCACTGATGTTGAACGTTTTTACCAGCAATGCGATCCTGAAAAGGAGAATCTTTGTTTGTATGGATTCCCGAACGAAGAATGGGAAGTTAATCTACCTGCTGAAGAAGTTCCTCCAGAGCTCCCGGAACCTGCTTTGGGCATCAACTTTGCCCGAGATGGAATGCAAGAAAGGGACTGGTTGTCTCTGGTAGCTGTGCACAGCGACGCATGGTTGCTTTCAGTGGCTTTCTACTTTGGTGCCAGATTCGGTTTTGACAAGACTGAAAGGAAACGTCTCTTCACTCTGATGAATGATCTGCCATCTATCTTCGAGGTTGTGGCGGGCATTGAAAAGAGACAGTCAAAGGAGAAGTCATCAGTTTCAAATAACAGCATCCATAGGCCTAAGTCAAGCTCTAAAGGGAGAGGCTCTGAGTCGGTCAAATATCCAAAAGCAATGCCAAAGAATGAGGACGAGGGTCTGGATGAGGAAGGTGATGATGATGAGCACGGCGAGACTGTCTGTGGTGCATGTGGGGAGAGCTATGCTGCTGATGAATTCTGGATTTGCTGCGACATATGTGAGAAGTGGTTCCATGGAAAATGCGTGAAGATAACCCCTGCCAGAGCTGAGCACATCAAGCACTACAAGTGCCCGTCATGCAGCAACAAGAGAGTCCGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

258

Amino Acids

29.11

Weight (kDa)

5.17

Isoelectric Point (pI)

55.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26210
fragaria_vesca	FvH4_1g08141
malus_domestica	MD02G1086000.v1.1
prunus_persica	Prupe.7G203700_v2.0.a1 Prupe.7G203700_v2.0.a1
pyrus_communis	pycom02g06920 pycom15g18960
rosa_chinensis	RchiOBHm_Chr2g0094211
rosa_laevigata	RLG00000016466
rosa_multiflora	Rmu_sc0002193.1_g000007 Rmu_ssc0000070.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147370
rosa_rugosa	Rorug02G0041800
rosa_samantha	Rh2BG089700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	211, 244
AccB1I	GGYRCC	1 cut(s)	344
AciI	CCGC	2 cut(s)	43, 428
AclI	AACGTT	1 cut(s)	121
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	644
AcuI	CTGAAG	1 cut(s)	228
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	49, 242
AgsI	TTSAA	4 cut(s)	73, 119, 437, 471
AhdI	GACNNNNNGTC	1 cut(s)	286
AluBI	AGCT	6 cut(s)	101, 226, 299, 501, 630, 716
AluI	AGCT	6 cut(s)	101, 226, 299, 501, 630, 716
Alw21I	GWGCWC	4 cut(s)	228, 306, 597, 723
Alw26I	GTCTC	4 cut(s)	294, 386, 436, 596
Alw44I	GTGCAC	1 cut(s)	302
AlwI	GGATC	1 cut(s)	134
Ama87I	CYCGRG	1 cut(s)	258
AoxI	GGCC	3 cut(s)	76, 488, 767
ApaLI	GTGCAC	1 cut(s)	302
ApeKI	GCWGC	3 cut(s)	635, 657, 750
ApoI	RAATTY	1 cut(s)	644
ArsI	GACNNNNNNTTYG	2 cut(s)	443, 475
Asp700I	GAANNNNTTC	2 cut(s)	213, 677
AspS9I	GGNCC	1 cut(s)	76
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	4 cut(s)	16, 55, 97, 593
AvaI	CYCGRG	1 cut(s)	258
BaeGI	GKGCMC	2 cut(s)	306, 743
BanI	GGYRCC	1 cut(s)	344
BanII	GRGCYC	1 cut(s)	228
BarI	GAAGNNNNNNTAC	2 cut(s)	183, 215
Bbv12I	GWGCWC	4 cut(s)	228, 306, 597, 723
BbvI	GCAGC	3 cut(s)	622, 644, 762
BccI	CCATC	2 cut(s)	257, 415
BceAI	ACGGC	2 cut(s)	63, 613
BclI	TGATCA	1 cut(s)	93
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	4 cut(s)	294, 386, 436, 596
BfuAI	ACCTGC	2 cut(s)	211, 244
BisI	GCNGC	3 cut(s)	636, 658, 751
BlpI	GCTNAGC	1 cut(s)	717
BlsI	GCNGC	3 cut(s)	637, 659, 752
Bme1390I	CCNGG	1 cut(s)	230
BmeRI	GACNNNNNGTC	1 cut(s)	286
BmeT110I	CYCGRG	1 cut(s)	258
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	3 cut(s)	234, 346, 680
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	2 cut(s)	255, 489
BoxI	GACNNNNGTC	1 cut(s)	564
BpmI	CTGGAG	1 cut(s)	204
Bpu1102I	GCTNAGC	1 cut(s)	717
BpuMI	CCSGG	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	682
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 242
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	287
Bse3DI	GCAATG	2 cut(s)	140, 549
BseDI	CCNNGG	1 cut(s)	682
BseGI	GGATG	2 cut(s)	480, 577
BseLI	CCNNNNNNNGG	2 cut(s)	49, 242
BseMI	GCAATG	2 cut(s)	140, 549
BseMII	CTCAG	2 cut(s)	510, 708
BseNI	ACTGG	1 cut(s)	287
BseRI	GAGGAG	1 cut(s)	68
BseSI	GKGCMC	2 cut(s)	306, 743
BseXI	GCAGC	3 cut(s)	622, 644, 762
BshFI	GGCC	3 cut(s)	78, 490, 769
BshNI	GGYRCC	1 cut(s)	344
BsiHKAI	GWGCWC	4 cut(s)	228, 306, 597, 723
BsiHKCI	CYCGRG	1 cut(s)	258
BsiSI	CCGG	3 cut(s)	87, 230, 766
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	2 cut(s)	49, 242
BsmAI	GTCTC	4 cut(s)	294, 386, 436, 596
BsmBI	CGTCTC	1 cut(s)	386
BsmFI	GGGAC	1 cut(s)	293
BsmI	GAATGC	1 cut(s)	273
BsnI	GGCC	3 cut(s)	78, 490, 769
BsoBI	CYCGRG	1 cut(s)	258
Bsp1286I	GDGCHC	5 cut(s)	228, 306, 597, 723, 743
Bsp143I	GATC	3 cut(s)	93, 139, 400
Bsp1720I	GCTNAGC	1 cut(s)	717
Bsp19I	CCATGG	1 cut(s)	682
BspACI	CCGC	2 cut(s)	43, 428
BspANI	GGCC	3 cut(s)	78, 490, 769
BspCNI	CTCAG	2 cut(s)	511, 709
BspLI	GGNNCC	3 cut(s)	234, 346, 680
BspMI	ACCTGC	2 cut(s)	211, 244
BspPI	GGATC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	344
BsrDI	GCAATG	2 cut(s)	140, 549
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	287
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	682
BssMI	GATC	3 cut(s)	93, 139, 400
BssT1I	CCWWGG	1 cut(s)	682
Bst4CI	ACNGT	4 cut(s)	33, 49, 447, 607
Bst6I	CTCTTC	1 cut(s)	389
BstC8I	GCNNGC	2 cut(s)	88, 430
BstDEI	CTNAG	3 cut(s)	492, 519, 717
BstDSI	CCRYGG	1 cut(s)	682
BstF5I	GGATG	2 cut(s)	480, 577
BstKTI	GATC	3 cut(s)	96, 142, 403
BstMAI	GTCTC	4 cut(s)	294, 386, 436, 596
BstMBI	GATC	3 cut(s)	93, 139, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	727, 747
BstNSI	RCATGY	1 cut(s)	621
BstPAI	GACNNNNGTC	1 cut(s)	564
BstSCI	CCNGG	1 cut(s)	228
BstSLI	GKGCMC	2 cut(s)	306, 743
BstV1I	GCAGC	3 cut(s)	622, 644, 762
BsuRI	GGCC	3 cut(s)	78, 490, 769
BtgI	CCRYGG	1 cut(s)	682
BtsCI	GGATG	2 cut(s)	480, 577
BtsIMutI	CAGTG	3 cut(s)	45, 108, 333
BveI	ACCTGC	2 cut(s)	211, 244
Cac8I	GCNNGC	2 cut(s)	88, 430
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	76
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	34
CspCI	CAANNNNNGTGG	2 cut(s)	97, 132
CviAII	CATG	4 cut(s)	315, 618, 683, 747
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	3 cut(s)	492, 519, 717
DpnI	GATC	3 cut(s)	95, 141, 402
DpnII	GATC	3 cut(s)	93, 139, 400
DriI	GACNNNNNGTC	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	389
Eam1105I	GACNNNNNGTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	389
Ecl136II	GAGCTC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	682
Eco147I	AGGCCT	1 cut(s)	490
Eco24I	GRGCYC	1 cut(s)	228
Eco53kI	GAGCTC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	226
EcoRI	GAATTC	1 cut(s)	644
EcoT14I	CCWWGG	1 cut(s)	682
EcoT38I	GRGCYC	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	682
Esp3I	CGTCTC	1 cut(s)	386
FaeI	CATG	4 cut(s)	318, 621, 686, 750
FaiI	YATR	9 cut(s)	168, 316, 486, 619, 633, 665, 667, 684, 748
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	4 cut(s)	314, 617, 682, 746
FauI	CCCGC	2 cut(s)	50, 421
FauNDI	CATATG	1 cut(s)	665
FbaI	TGATCA	1 cut(s)	93
Fnu4HI	GCNGC	3 cut(s)	636, 658, 751
FokI	GGATG	2 cut(s)	467, 584
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	3 cut(s)	636, 658, 751
GluI	GCNGC	3 cut(s)	636, 658, 751
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	3 cut(s)	78, 490, 769
HapII	CCGG	3 cut(s)	87, 230, 766
HgaI	GACGC	1 cut(s)	320
Hin1II	CATG	4 cut(s)	318, 621, 686, 750
HinfI	GANTC	5 cut(s)	154, 171, 351, 521, 762
HpaII	CCGG	3 cut(s)	87, 230, 766
HphI	GGTGA	4 cut(s)	16, 55, 97, 593
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	2 cut(s)	393, 520
Hpy188III	TCNNGA	5 cut(s)	143, 175, 221, 569, 649
Hpy8I	GTNNAC	1 cut(s)	304
Hpy99I	CGWCG	2 cut(s)	84, 314
HpyAV	CCTTC	2 cut(s)	11, 572
HpyCH4III	ACNGT	4 cut(s)	33, 49, 447, 607
HpyCH4IV	ACGT	2 cut(s)	121, 379
HpyCH4V	TGCA	4 cut(s)	271, 304, 617, 750
HpyF10VI	GCNNNNNNNGC	2 cut(s)	727, 747
HpyF3I	CTNAG	3 cut(s)	492, 519, 717
HpySE526I	ACGT	2 cut(s)	121, 379
Hsp92II	CATG	4 cut(s)	318, 621, 686, 750
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	3 cut(s)	93, 139, 400
LmnI	GCTCC	1 cut(s)	231
Lsp1109I	GCAGC	3 cut(s)	622, 644, 762
LweI	GCATC	2 cut(s)	255, 489
MaeII	ACGT	2 cut(s)	121, 379
MalI	GATC	3 cut(s)	95, 141, 402
MboI	GATC	3 cut(s)	93, 139, 400
MboII	GAAGA	5 cut(s)	194, 221, 376, 406, 709
MhlI	GDGCHC	5 cut(s)	228, 306, 597, 723, 743
MluCI	AATT	1 cut(s)	644
MlyI	GAGTC	2 cut(s)	530, 771
MnlI	CCTC	9 cut(s)	14, 46, 49, 228, 412, 506, 550, 556, 568
MroNI	GCCGGC	1 cut(s)	86
MroXI	GAANNNNTTC	2 cut(s)	213, 677
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	392
MspI	CCGG	3 cut(s)	87, 230, 766
MspR9I	CCNGG	1 cut(s)	230
Mva1269I	GAATGC	1 cut(s)	273
MwoI	GCNNNNNNNGC	2 cut(s)	727, 747
NaeI	GCCGGC	1 cut(s)	88
NciI	CCSGG	1 cut(s)	230
NcoI	CCATGG	1 cut(s)	682
NdeI	CATATG	1 cut(s)	665
NdeII	GATC	3 cut(s)	93, 139, 400
NgoMIV	GCCGGC	1 cut(s)	86
NlaIII	CATG	4 cut(s)	318, 621, 686, 750
NlaIV	GGNNCC	3 cut(s)	234, 346, 680
NspI	RCATGY	1 cut(s)	621
PceI	AGGCCT	1 cut(s)	490
PctI	GAATGC	1 cut(s)	273
PdiI	GCCGGC	1 cut(s)	88
PdmI	GAANNNNTTC	2 cut(s)	213, 677
PfeI	GAWTC	3 cut(s)	154, 171, 351
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	3 cut(s)	637, 659, 752
PleI	GAGTC	2 cut(s)	529, 770
PpsI	GAGTC	2 cut(s)	529, 770
PshAI	GACNNNNGTC	1 cut(s)	564
Psp124BI	GAGCTC	1 cut(s)	228
Psp1406I	AACGTT	1 cut(s)	121
PspN4I	GGNNCC	3 cut(s)	234, 346, 680
PspPI	GGNCC	1 cut(s)	76
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	1 cut(s)	392
SacI	GAGCTC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	3 cut(s)	636, 658, 751
Sau3AI	GATC	3 cut(s)	93, 139, 400
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	2 cut(s)	530, 771
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	5 cut(s)	228, 306, 597, 723, 743
SfaNI	GCATC	2 cut(s)	255, 489
SmiMI	CAYNNNNRTG	1 cut(s)	392
Sse9I	AATT	1 cut(s)	644
SseBI	AGGCCT	1 cut(s)	490
SsiI	CCGC	2 cut(s)	43, 428
SstI	GAGCTC	1 cut(s)	228
StuI	AGGCCT	1 cut(s)	490
StyD4I	CCNGG	1 cut(s)	228
StyI	CCWWGG	1 cut(s)	682
TaaI	ACNGT	4 cut(s)	33, 49, 447, 607
TaiI	ACGT	2 cut(s)	124, 382
TaqI	TCGA	2 cut(s)	82, 417
TaqII	GACCGA	1 cut(s)	514
TasI	AATT	1 cut(s)	644
TfiI	GAWTC	3 cut(s)	154, 171, 351
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	3 cut(s)	52, 115, 333
TseI	GCWGC	3 cut(s)	635, 657, 750
TspDTI	ATGAA	2 cut(s)	410, 657
TspRI	CASTG	3 cut(s)	52, 115, 333
VneI	GTGCAC	1 cut(s)	302
XapI	RAATTY	1 cut(s)	644
XceI	RCATGY	1 cut(s)	621
XmnI	GAANNNNTTC	2 cut(s)	213, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.