Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0016504

Physical Location & Seq

Genomic Coordinates Forward (+)

18885919 .. 18889352

Gene Structure 3434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G203700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGAAGGAAGAGGCGGAGGAGCAGGAGCGCCGTACAGCCCACGCACTGTGGATGAGGTTTTCAGAGACTTCAAGGGCCGCCGAGCCGGCATGATCAAAGCTCTTTCCACTGATGTTGAAGATTTTTACGAGCAATGCGATCCTGAGAAGGAAAACCTTTGTTTGTATGGATTCCCAAATGAAGAATGGGAAGTTAATCTACCTGCTGAGGAAGTTCCTCCTGAACTTCCGGAACCTGCTTTGGGCATCAACTTTGCCAGAGATGGGATGCAAGAAAAGGATTTTTTATCTCTGGTAGCTGTTCACAGTGATGCATGGCTACTTTCAGTGGCTTTCTATTTTGGTGCCAGATTCGGTTTTGATAAGGCTGACAGGAAACGTCTCTTCACTATGATGAATGATTTACCAACAATATTTGAGGTTGTGACGGGAAGTGCAAAGAAACAATCAAAGGAGAAGTCATCAGTTACAACAAATCAAAGCATCCATAGGCCTAAGTCAAGCTCTAAAGGGCGAGGCTCTGATTCAAGCAAACAGTCGAAAATGATACCAAAGGATGAAGACGAGGGAATGGACGAGGAAGATGATGATGACCACAGCGATACTCTGTGTGGTGCATGCGGGGAGAACTATGCTTCCGATGAATTCTGGATTTGTTGCGACATATGTGAGAAGTGGTTTCATGGAAAGTGTGTGAAGATCACTCCTGCCAGAGCTGAGCACATCAAGCACTACAAGTGCCCCTCATGCAGCAACAAGAGAGTGCGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

258

Amino Acids

28.9

Weight (kDa)

5.14

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26210
fragaria_vesca	FvH4_1g08141
malus_domestica	MD02G1086000.v1.1
prunus_persica	Prupe.7G203700_v2.0.a1 Prupe.7G203700_v2.0.a1
pyrus_communis	pycom02g06920 pycom15g18960
rosa_chinensis	RchiOBHm_Chr2g0094211
rosa_laevigata	RLG00000016466
rosa_multiflora	Rmu_sc0002193.1_g000007 Rmu_ssc0000070.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147370
rosa_rugosa	Rorug02G0041800
rosa_samantha	Rh2BG089700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	211, 244
AccB1I	GGYRCC	1 cut(s)	344
AccIII	TCCGGA	1 cut(s)	229
AciI	CCGC	4 cut(s)	15, 79, 621, 766
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	644
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	242, 264
AgsI	TTSAA	3 cut(s)	73, 119, 528
AloI	GAACNNNNNNTCC	2 cut(s)	620, 652
AluBI	AGCT	4 cut(s)	101, 299, 504, 716
AluI	AGCT	4 cut(s)	101, 299, 504, 716
Alw21I	GWGCWC	1 cut(s)	723
Alw26I	GTCTC	2 cut(s)	60, 386
AlwI	GGATC	1 cut(s)	134
Aor13HI	TCCGGA	1 cut(s)	229
AoxI	GGCC	3 cut(s)	76, 491, 767
ApeKI	GCWGC	1 cut(s)	750
ApoI	RAATTY	1 cut(s)	644
ArsI	GACNNNNNNTTYG	2 cut(s)	443, 475
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	76
BaeGI	GKGCMC	1 cut(s)	743
BanI	GGYRCC	1 cut(s)	344
BarI	GAAGNNNNNNTAC	2 cut(s)	183, 215
BbsI	GAAGAC	1 cut(s)	567
Bbv12I	GWGCWC	1 cut(s)	723
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	762
BccI	CCATC	1 cut(s)	257
BceAI	ACGGC	1 cut(s)	16
BclI	TGATCA	1 cut(s)	93
BcoDI	GTCTC	2 cut(s)	60, 386
BfoI	RGCGCY	1 cut(s)	32
BfuAI	ACCTGC	2 cut(s)	211, 244
BglI	GCCNNNNNGGC	1 cut(s)	87
BisI	GCNGC	3 cut(s)	79, 751, 767
BlpI	GCTNAGC	1 cut(s)	717
BlsI	GCNGC	3 cut(s)	80, 752, 768
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	2 cut(s)	234, 346
BmsI	GCATC	4 cut(s)	255, 258, 301, 492
BpiI	GAAGAC	1 cut(s)	567
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	717
BsaWI	WCCGGW	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 264
Bse118I	RCCGGY	1 cut(s)	86
Bse3DI	GCAATG	1 cut(s)	140
BseAI	TCCGGA	1 cut(s)	229
BseGI	GGATG	4 cut(s)	58, 273, 483, 562
BseLI	CCNNNNNNNGG	2 cut(s)	242, 264
BseMI	GCAATG	1 cut(s)	140
BseMII	CTCAG	3 cut(s)	135, 198, 708
BseRI	GAGGAG	1 cut(s)	33
BseSI	GKGCMC	1 cut(s)	743
BseXI	GCAGC	1 cut(s)	762
BshFI	GGCC	3 cut(s)	78, 493, 769
BshNI	GGYRCC	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	723
BsiSI	CCGG	2 cut(s)	87, 230
BslI	CCNNNNNNNGG	2 cut(s)	242, 264
BsmAI	GTCTC	2 cut(s)	60, 386
BsmBI	CGTCTC	1 cut(s)	386
BsnI	GGCC	3 cut(s)	78, 493, 769
Bsp1286I	GDGCHC	2 cut(s)	723, 743
Bsp13I	TCCGGA	1 cut(s)	229
Bsp143I	GATC	3 cut(s)	93, 139, 699
Bsp1720I	GCTNAGC	1 cut(s)	717
BspACI	CCGC	4 cut(s)	15, 79, 621, 766
BspANI	GGCC	3 cut(s)	78, 493, 769
BspCNI	CTCAG	3 cut(s)	136, 199, 709
BspEI	TCCGGA	1 cut(s)	229
BspLI	GGNNCC	2 cut(s)	234, 346
BspMI	ACCTGC	2 cut(s)	211, 244
BspPI	GGATC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	344
BsrDI	GCAATG	1 cut(s)	140
BsrFI	RCCGGY	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	86
BssMI	GATC	3 cut(s)	93, 139, 699
Bst4CI	ACNGT	3 cut(s)	49, 308, 537
Bst6I	CTCTTC	2 cut(s)	4, 389
BstC8I	GCNNGC	2 cut(s)	88, 619
BstDEI	CTNAG	4 cut(s)	144, 207, 495, 717
BstF5I	GGATG	4 cut(s)	58, 273, 483, 562
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	3 cut(s)	96, 142, 702
BstMAI	GTCTC	2 cut(s)	60, 386
BstMBI	GATC	3 cut(s)	93, 139, 699
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 727, 747
BstNSI	RCATGY	1 cut(s)	621
BstSLI	GKGCMC	1 cut(s)	743
BstV1I	GCAGC	1 cut(s)	762
BstV2I	GAAGAC	1 cut(s)	567
BsuRI	GGCC	3 cut(s)	78, 493, 769
BtsCI	GGATG	4 cut(s)	58, 273, 483, 562
BtsIMutI	CAGTG	4 cut(s)	45, 108, 313, 333
BveI	ACCTGC	2 cut(s)	211, 244
Cac8I	GCNNGC	2 cut(s)	88, 619
CfoI	GCGC	1 cut(s)	31
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	34
CspCI	CAANNNNNGTGG	2 cut(s)	97, 132
CviAII	CATG	5 cut(s)	91, 315, 618, 683, 747
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	4 cut(s)	144, 207, 495, 717
DpnI	GATC	3 cut(s)	95, 141, 701
DpnII	GATC	3 cut(s)	93, 139, 699
Eam1104I	CTCTTC	2 cut(s)	4, 389
EarI	CTCTTC	2 cut(s)	4, 389
EciI	GGCGGA	1 cut(s)	30
Eco147I	AGGCCT	1 cut(s)	493
EcoRI	GAATTC	1 cut(s)	644
EcoT22I	ATGCAT	1 cut(s)	316
Esp3I	CGTCTC	1 cut(s)	386
FaeI	CATG	5 cut(s)	94, 318, 621, 686, 750
FatI	CATG	5 cut(s)	90, 314, 617, 682, 746
FauI	CCCGC	1 cut(s)	614
FauNDI	CATATG	1 cut(s)	665
FbaI	TGATCA	1 cut(s)	93
Fnu4HI	GCNGC	3 cut(s)	79, 751, 767
FokI	GGATG	4 cut(s)	65, 280, 470, 569
Fsp4HI	GCNGC	3 cut(s)	79, 751, 767
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	3 cut(s)	79, 751, 767
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	3 cut(s)	78, 493, 769
HapII	CCGG	2 cut(s)	87, 230
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	5 cut(s)	94, 318, 621, 686, 750
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HinfI	GANTC	3 cut(s)	171, 351, 524
HpaII	CCGG	2 cut(s)	87, 230
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	3 cut(s)	65, 523, 640
Hpy188III	TCNNGA	4 cut(s)	143, 221, 230, 649
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	3 cut(s)	49, 308, 537
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	5 cut(s)	271, 314, 437, 617, 750
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 727, 747
HpyF3I	CTNAG	4 cut(s)	144, 207, 495, 717
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	5 cut(s)	94, 318, 621, 686, 750
HspAI	GCGC	1 cut(s)	29
Kpn2I	TCCGGA	1 cut(s)	229
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	3 cut(s)	93, 139, 699
LmnI	GCTCC	2 cut(s)	20, 26
Lsp1109I	GCAGC	1 cut(s)	762
LweI	GCATC	4 cut(s)	255, 258, 301, 492
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	2 cut(s)	424, 466
MalI	GATC	3 cut(s)	95, 141, 701
MboI	GATC	3 cut(s)	93, 139, 699
MboII	GAAGA	7 cut(s)	21, 131, 194, 376, 572, 593, 709
MhlI	GDGCHC	2 cut(s)	723, 743
MluCI	AATT	1 cut(s)	644
Mph1103I	ATGCAT	1 cut(s)	316
MroI	TCCGGA	1 cut(s)	229
MroNI	GCCGGC	1 cut(s)	86
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	2 cut(s)	309, 392
MspI	CCGG	2 cut(s)	87, 230
MwoI	GCNNNNNNNGC	3 cut(s)	87, 727, 747
NaeI	GCCGGC	1 cut(s)	88
NdeI	CATATG	1 cut(s)	665
NdeII	GATC	3 cut(s)	93, 139, 699
NgoMIV	GCCGGC	1 cut(s)	86
NlaIII	CATG	5 cut(s)	94, 318, 621, 686, 750
NlaIV	GGNNCC	2 cut(s)	234, 346
NmeAIII	GCCGAG	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	424
NsiI	ATGCAT	1 cut(s)	316
NspI	RCATGY	1 cut(s)	621
PaeI	GCATGC	1 cut(s)	621
PceI	AGGCCT	1 cut(s)	493
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PdiI	GCCGGC	1 cut(s)	88
PfeI	GAWTC	3 cut(s)	171, 351, 524
PkrI	GCNGC	3 cut(s)	80, 752, 768
PspN4I	GGNNCC	2 cut(s)	234, 346
PspPI	GGNCC	1 cut(s)	76
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	2 cut(s)	309, 392
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	3 cut(s)	79, 751, 767
Sau3AI	GATC	3 cut(s)	93, 139, 699
Sau96I	GGNCC	1 cut(s)	76
SduI	GDGCHC	2 cut(s)	723, 743
SfaNI	GCATC	4 cut(s)	255, 258, 301, 492
SmiMI	CAYNNNNRTG	2 cut(s)	309, 392
SphI	GCATGC	1 cut(s)	621
Sse9I	AATT	1 cut(s)	644
SseBI	AGGCCT	1 cut(s)	493
SsiI	CCGC	4 cut(s)	15, 79, 621, 766
SspI	AATATT	1 cut(s)	414
StuI	AGGCCT	1 cut(s)	493
TaaI	ACNGT	3 cut(s)	49, 308, 537
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	1 cut(s)	539
TasI	AATT	1 cut(s)	644
TauI	GCSGC	2 cut(s)	81, 769
TfiI	GAWTC	3 cut(s)	171, 351, 524
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	4 cut(s)	52, 115, 313, 333
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	1 cut(s)	750
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	5 cut(s)	195, 410, 573, 657, 671
TspRI	CASTG	4 cut(s)	52, 115, 313, 333
XapI	RAATTY	1 cut(s)	644
XceI	RCATGY	1 cut(s)	621
XcmI	CCANNNNNNNNNTGG	1 cut(s)	183
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.