Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000070.1

Orthogroup ID

OG0016504

Physical Location & Seq

Genomic Coordinates Reverse (-)

22221 .. 25295

Gene Structure 3075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000070.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atggaaggaccaggagcagccacggcgccgcagctcagcccgcgcaccgttgaagaggttttcagggacttcaagtgccggagagccggcatagtcaaagctctcaccaccgatgttggtgaattttacgagcaatgcgatcctgagaaggagaatctttgtttgtatggactgcctaatgaagactgggaagttaatctacctgctgaggaagttcctccagagcttcctgaacctgctttgggcatcaactttgccagagatgggatgaaagaaaaggactggttgtctctggttgcagttcacagtgatgcatggttacttggagtggctttctattttggtgccagattcgtatttgagattgtgacgggctctgtgaagaaacaggcgatggagaagtcagcagtttcaaataacagcatccataagccaaagtcaagctctagagggcgaggctctgaaccaggcaaatattcaaaaatgctgccaaaggacgaggatgagggactggatgaggaagatgatgaggagcatggggaaactatgtgtggttcctgtggggagagctatgctgcagatgaattctggatttgttgcgacatttgtgagaagtggttccatggaaaatgcgtgaagataactcctgccagagctgagcacatcaagcattacaagtgccctgcatgcagcaacaaaagaatgcggccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

237

Amino Acids

26.53

Weight (kDa)

5.07

Isoelectric Point (pI)

51.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26210
fragaria_vesca	FvH4_1g08141
malus_domestica	MD02G1086000.v1.1
prunus_persica	Prupe.7G203700_v2.0.a1 Prupe.7G203700_v2.0.a1
pyrus_communis	pycom02g06920 pycom15g18960
rosa_chinensis	RchiOBHm_Chr2g0094211
rosa_laevigata	RLG00000016466
rosa_multiflora	Rmu_sc0002193.1_g000007 Rmu_ssc0000070.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147370
rosa_rugosa	Rorug02G0041800
rosa_samantha	Rh2BG089700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	211, 244
AccB1I	GGYRCC	2 cut(s)	25, 344
AccII	CGCG	1 cut(s)	43
AciI	CCGC	3 cut(s)	29, 41, 706
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	2 cut(s)	122, 584
AcyI	GRCGYC	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	242, 264
AgsI	TTSAA	4 cut(s)	53, 73, 414, 480
AhdI	GACNNNNNGTC	1 cut(s)	286
AjnI	CCWGG	2 cut(s)	10, 466
AluBI	AGCT	6 cut(s)	34, 101, 226, 444, 570, 656
AluI	AGCT	6 cut(s)	34, 101, 226, 444, 570, 656
Alw21I	GWGCWC	1 cut(s)	663
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	134
AoxI	GGCC	1 cut(s)	707
ApeKI	GCWGC	5 cut(s)	17, 31, 487, 575, 690
ApoI	RAATTY	2 cut(s)	122, 584
Asp700I	GAANNNNTTC	1 cut(s)	617
AspLEI	GCGC	2 cut(s)	28, 45
AspS9I	GGNCC	1 cut(s)	8
AsuHPI	GGTGA	2 cut(s)	97, 131
AvaII	GGWCC	1 cut(s)	8
BaeGI	GKGCMC	1 cut(s)	683
BanI	GGYRCC	2 cut(s)	25, 344
BanII	GRGCYC	1 cut(s)	377
BarI	GAAGNNNNNNTAC	2 cut(s)	183, 215
BbsI	GAAGAC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	663
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	5 cut(s)	29, 43, 474, 562, 702
BccI	CCATC	2 cut(s)	257, 388
BceAI	ACGGC	1 cut(s)	39
BciT130I	CCWGG	2 cut(s)	12, 468
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	1 cut(s)	447
BfmI	CTRYAG	1 cut(s)	576
BfoI	RGCGCY	1 cut(s)	29
BfuAI	ACCTGC	2 cut(s)	211, 244
BisI	GCNGC	7 cut(s)	18, 29, 32, 488, 576, 691, 707
BlpI	GCTNAGC	2 cut(s)	35, 657
BlsI	GCNGC	7 cut(s)	19, 30, 33, 489, 577, 692, 708
Bme1390I	CCNGG	2 cut(s)	12, 468
Bme18I	GGWCC	1 cut(s)	8
BmeRI	GACNNNNNGTC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	8
BmiI	GGNNCC	4 cut(s)	27, 346, 556, 620
BmrFI	CCNGG	2 cut(s)	12, 468
BmrI	ACTGGG	1 cut(s)	196
BmsI	GCATC	3 cut(s)	255, 301, 432
BmuI	ACTGGG	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	189
BpmI	CTGGAG	1 cut(s)	204
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu1102I	GCTNAGC	2 cut(s)	35, 657
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	21, 622
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 264
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	3 cut(s)	191, 287, 516
Bse3DI	GCAATG	1 cut(s)	140
BseBI	CCWGG	2 cut(s)	12, 468
BseDI	CCNNGG	2 cut(s)	21, 622
BseGI	GGATG	4 cut(s)	273, 423, 508, 520
BseLI	CCNNNNNNNGG	2 cut(s)	242, 264
BseMI	GCAATG	1 cut(s)	140
BseMII	CTCAG	4 cut(s)	49, 135, 198, 648
BseNI	ACTGG	3 cut(s)	191, 287, 516
BseRI	GAGGAG	1 cut(s)	545
BseSI	GKGCMC	1 cut(s)	683
BseXI	GCAGC	5 cut(s)	29, 43, 474, 562, 702
Bsh1236I	CGCG	1 cut(s)	43
BshFI	GGCC	1 cut(s)	709
BshNI	GGYRCC	2 cut(s)	25, 344
BsiHKAI	GWGCWC	1 cut(s)	663
BsiSI	CCGG	2 cut(s)	79, 87
BslFI	GGGAC	2 cut(s)	80, 522
BslI	CCNNNNNNNGG	2 cut(s)	242, 264
BsmAI	GTCTC	1 cut(s)	294
BsmFI	GGGAC	2 cut(s)	80, 522
BsmI	GAATGC	1 cut(s)	708
BsnI	GGCC	1 cut(s)	709
Bsp1286I	GDGCHC	3 cut(s)	377, 663, 683
Bsp143I	GATC	1 cut(s)	139
Bsp1720I	GCTNAGC	2 cut(s)	35, 657
Bsp19I	CCATGG	1 cut(s)	622
BspACI	CCGC	3 cut(s)	29, 41, 706
BspANI	GGCC	1 cut(s)	709
BspCNI	CTCAG	4 cut(s)	48, 136, 199, 649
BspFNI	CGCG	1 cut(s)	43
BspLI	GGNNCC	4 cut(s)	27, 346, 556, 620
BspMAI	CTGCAG	1 cut(s)	580
BspMI	ACCTGC	2 cut(s)	211, 244
BspPI	GGATC	1 cut(s)	134
BspT107I	GGYRCC	2 cut(s)	25, 344
BsrDI	GCAATG	1 cut(s)	140
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	3 cut(s)	191, 287, 516
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	2 cut(s)	21, 622
BssMI	GATC	1 cut(s)	139
BssNI	GRCGYC	1 cut(s)	26
BssT1I	CCWWGG	1 cut(s)	622
Bst2UI	CCWGG	2 cut(s)	12, 468
Bst4CI	ACNGT	2 cut(s)	49, 308
Bst6I	CTCTTC	1 cut(s)	48
BstACI	GRCGYC	1 cut(s)	26
BstC8I	GCNNGC	3 cut(s)	41, 88, 688
BstDEI	CTNAG	4 cut(s)	35, 144, 207, 657
BstDSI	CCRYGG	2 cut(s)	21, 622
BstF5I	GGATG	4 cut(s)	273, 423, 508, 520
BstFNI	CGCG	1 cut(s)	43
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	2 cut(s)	28, 45
BstKTI	GATC	1 cut(s)	142
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 40, 667, 687
BstNI	CCWGG	2 cut(s)	12, 468
BstNSI	RCATGY	1 cut(s)	690
BstSCI	CCNGG	2 cut(s)	10, 466
BstSFI	CTRYAG	1 cut(s)	576
BstSLI	GKGCMC	1 cut(s)	683
BstUI	CGCG	1 cut(s)	43
BstV1I	GCAGC	5 cut(s)	29, 43, 474, 562, 702
BstV2I	GAAGAC	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	709
BtgI	CCRYGG	2 cut(s)	21, 622
BtgZI	GCGATG	1 cut(s)	407
BtsCI	GGATG	4 cut(s)	273, 423, 508, 520
BtsIMutI	CAGTG	1 cut(s)	313
BveI	ACCTGC	2 cut(s)	211, 244
Cac8I	GCNNGC	3 cut(s)	41, 88, 688
CfoI	GCGC	2 cut(s)	28, 45
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	8
CspCI	CAANNNNNGTGG	2 cut(s)	97, 132
CviAII	CATG	4 cut(s)	315, 536, 623, 687
DdeI	CTNAG	4 cut(s)	35, 144, 207, 657
DinI	GGCGCC	1 cut(s)	27
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
DriI	GACNNNNNGTC	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	48
Eam1105I	GACNNNNNGTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	622
Eco24I	GRGCYC	1 cut(s)	377
Eco47I	GGWCC	1 cut(s)	8
EcoRI	GAATTC	1 cut(s)	584
EcoRII	CCWGG	2 cut(s)	10, 466
EcoT14I	CCWWGG	1 cut(s)	622
EcoT22I	ATGCAT	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	377
EgeI	GGCGCC	1 cut(s)	27
EheI	GGCGCC	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	622
FaeI	CATG	4 cut(s)	318, 539, 626, 690
FaiI	YATR	9 cut(s)	92, 168, 316, 429, 537, 548, 573, 624, 688
FaqI	GGGAC	2 cut(s)	80, 522
FatI	CATG	4 cut(s)	314, 535, 622, 686
FauI	CCCGC	1 cut(s)	48
Fnu4HI	GCNGC	7 cut(s)	18, 29, 32, 488, 576, 691, 707
FokI	GGATG	4 cut(s)	280, 410, 515, 527
FriOI	GRGCYC	1 cut(s)	377
Fsp4HI	GCNGC	7 cut(s)	18, 29, 32, 488, 576, 691, 707
FspBI	CTAG	1 cut(s)	447
GlaI	GCGC	2 cut(s)	27, 44
GluI	GCNGC	7 cut(s)	18, 29, 32, 488, 576, 691, 707
GsuI	CTGGAG	1 cut(s)	204
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	709
HapII	CCGG	2 cut(s)	79, 87
HhaI	GCGC	2 cut(s)	28, 45
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	4 cut(s)	318, 539, 626, 690
Hin6I	GCGC	2 cut(s)	26, 43
HinP1I	GCGC	2 cut(s)	26, 43
HinfI	GANTC	2 cut(s)	154, 351
HpaII	CCGG	2 cut(s)	79, 87
HphI	GGTGA	2 cut(s)	97, 131
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	1 cut(s)	463
Hpy188III	TCNNGA	5 cut(s)	143, 221, 230, 447, 589
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	2 cut(s)	49, 308
HpyCH4V	TGCA	5 cut(s)	299, 314, 578, 686, 690
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 40, 667, 687
HpyF3I	CTNAG	4 cut(s)	35, 144, 207, 657
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	4 cut(s)	318, 539, 626, 690
HspAI	GCGC	2 cut(s)	26, 43
KasI	GGCGCC	1 cut(s)	25
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	139
LmnI	GCTCC	2 cut(s)	14, 532
Lsp1109I	GCAGC	5 cut(s)	29, 43, 474, 562, 702
LweI	GCATC	3 cut(s)	255, 301, 432
MaeI	CTAG	1 cut(s)	447
MaeIII	GTNAC	2 cut(s)	318, 367
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	5 cut(s)	65, 194, 394, 533, 649
MhlI	GDGCHC	3 cut(s)	377, 663, 683
MluCI	AATT	2 cut(s)	122, 584
Mly113I	GGCGCC	1 cut(s)	26
MnlI	CCTC	9 cut(s)	49, 202, 228, 443, 449, 493, 499, 511, 523
Mph1103I	ATGCAT	1 cut(s)	316
MroNI	GCCGGC	1 cut(s)	86
MroXI	GAANNNNTTC	1 cut(s)	617
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	309
MspI	CCGG	2 cut(s)	79, 87
MspR9I	CCNGG	2 cut(s)	12, 468
Mva1269I	GAATGC	1 cut(s)	708
MvaI	CCWGG	2 cut(s)	12, 468
MvnI	CGCG	1 cut(s)	43
MwoI	GCNNNNNNNGC	4 cut(s)	23, 40, 667, 687
NaeI	GCCGGC	1 cut(s)	88
NarI	GGCGCC	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	622
NdeII	GATC	1 cut(s)	139
NgoMIV	GCCGGC	1 cut(s)	86
NlaIII	CATG	4 cut(s)	318, 539, 626, 690
NlaIV	GGNNCC	4 cut(s)	27, 346, 556, 620
NmuCI	GTSAC	1 cut(s)	367
NsiI	ATGCAT	1 cut(s)	316
NspI	RCATGY	1 cut(s)	690
PaeI	GCATGC	1 cut(s)	690
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PctI	GAATGC	1 cut(s)	708
PdiI	GCCGGC	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	617
PfeI	GAWTC	2 cut(s)	154, 351
PkrI	GCNGC	7 cut(s)	19, 30, 33, 489, 577, 692, 708
PluTI	GGCGCC	1 cut(s)	29
Psp6I	CCWGG	2 cut(s)	10, 466
PspGI	CCWGG	2 cut(s)	10, 466
PspN4I	GGNNCC	4 cut(s)	27, 346, 556, 620
PspPI	GGNCC	1 cut(s)	8
PstI	CTGCAG	1 cut(s)	580
RseI	CAYNNNNRTG	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	7 cut(s)	18, 29, 32, 488, 576, 691, 707
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	1 cut(s)	8
ScrFI	CCNGG	2 cut(s)	12, 468
SduI	GDGCHC	3 cut(s)	377, 663, 683
SetI	ASST	9 cut(s)	36, 60, 103, 205, 228, 238, 446, 572, 658
SfaNI	GCATC	3 cut(s)	255, 301, 432
SfcI	CTRYAG	1 cut(s)	576
SfoI	GGCGCC	1 cut(s)	27
SinI	GGWCC	1 cut(s)	8
SmiMI	CAYNNNNRTG	1 cut(s)	309
SphI	GCATGC	1 cut(s)	690
Sse9I	AATT	2 cut(s)	122, 584
SsiI	CCGC	3 cut(s)	29, 41, 706
SspDI	GGCGCC	1 cut(s)	25
SspI	AATATT	1 cut(s)	476
SspMI	CTAG	1 cut(s)	447
StyD4I	CCNGG	2 cut(s)	10, 466
StyI	CCWWGG	1 cut(s)	622
TaaI	ACNGT	2 cut(s)	49, 308
TasI	AATT	2 cut(s)	122, 584
TauI	GCSGC	2 cut(s)	31, 709
TfiI	GAWTC	2 cut(s)	154, 351
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	5 cut(s)	17, 31, 487, 575, 690
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	3 cut(s)	195, 284, 597
TspRI	CASTG	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	8
XapI	RAATTY	2 cut(s)	122, 584
XbaI	TCTAGA	1 cut(s)	446
XceI	RCATGY	1 cut(s)	690
XmnI	GAANNNNTTC	1 cut(s)	617
XspI	CTAG	1 cut(s)	447
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.