Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002193.1

Orthogroup ID

OG0016504

Physical Location & Seq

Genomic Coordinates Reverse (-)

28126 .. 29543

Gene Structure 1418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002193.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgataaatgatctgccatcagtatttgagattgtgacgggctctgtgaagaaacaggcgatggagaagtcagcagtttcaaataacagcatccataagccaaagtcaagctctagagggcgaggctctgaaccaggcaaatattcaaaaatgctgccaaaggacgaggatgagggactggatgaggaagatgatgaggagcatggggaaactatgtgtggttcctgtggggagagctatgctgcagatgaattctggatttgttgcgacatttgtgagaagtggttccatggaaaatgcgtgaagataactcctgccagagctgagcacatcaagcattacaagtgccctgcatgcagcaacaagagaatgcggccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

126

Amino Acids

14.13

Weight (kDa)

5.96

Isoelectric Point (pI)

54.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26210
fragaria_vesca	FvH4_1g08141
malus_domestica	MD02G1086000.v1.1
prunus_persica	Prupe.7G203700_v2.0.a1 Prupe.7G203700_v2.0.a1
pyrus_communis	pycom02g06920 pycom15g18960
rosa_chinensis	RchiOBHm_Chr2g0094211
rosa_laevigata	RLG00000016466
rosa_multiflora	Rmu_sc0002193.1_g000007 Rmu_ssc0000070.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147370
rosa_rugosa	Rorug02G0041800
rosa_samantha	Rh2BG089700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	373
AcsI	RAATTY	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	81, 147
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	3 cut(s)	111, 237, 323
AluI	AGCT	3 cut(s)	111, 237, 323
Alw21I	GWGCWC	1 cut(s)	330
AoxI	GGCC	1 cut(s)	374
ApeKI	GCWGC	3 cut(s)	154, 242, 357
ApoI	RAATTY	1 cut(s)	251
Asp700I	GAANNNNTTC	1 cut(s)	284
BaeGI	GKGCMC	1 cut(s)	350
BanII	GRGCYC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	3 cut(s)	141, 229, 369
BccI	CCATC	2 cut(s)	25, 55
BciT130I	CCWGG	1 cut(s)	135
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	1 cut(s)	243
BisI	GCNGC	4 cut(s)	155, 243, 358, 374
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	4 cut(s)	156, 244, 359, 375
Bme1390I	CCNGG	1 cut(s)	135
BmiI	GGNNCC	2 cut(s)	223, 287
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	99
Bpu1102I	GCTNAGC	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	289
Bse1I	ACTGG	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	3 cut(s)	90, 175, 187
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	183
BseRI	GAGGAG	1 cut(s)	212
BseSI	GKGCMC	1 cut(s)	350
BseXI	GCAGC	3 cut(s)	141, 229, 369
BshFI	GGCC	1 cut(s)	376
BsiHKAI	GWGCWC	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	189
BsmFI	GGGAC	1 cut(s)	189
BsmI	GAATGC	1 cut(s)	375
BsnI	GGCC	1 cut(s)	376
Bsp1286I	GDGCHC	3 cut(s)	44, 330, 350
Bsp143I	GATC	1 cut(s)	10
Bsp1720I	GCTNAGC	1 cut(s)	324
Bsp19I	CCATGG	1 cut(s)	289
BspACI	CCGC	1 cut(s)	373
BspANI	GGCC	1 cut(s)	376
BspCNI	CTCAG	1 cut(s)	316
BspLI	GGNNCC	2 cut(s)	223, 287
BspMAI	CTGCAG	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	1 cut(s)	10
BssT1I	CCWWGG	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	1 cut(s)	324
BstDSI	CCRYGG	1 cut(s)	289
BstF5I	GGATG	3 cut(s)	90, 175, 187
BstKTI	GATC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	2 cut(s)	334, 354
BstNI	CCWGG	1 cut(s)	135
BstNSI	RCATGY	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	350
BstV1I	GCAGC	3 cut(s)	141, 229, 369
BsuRI	GGCC	1 cut(s)	376
BtgI	CCRYGG	1 cut(s)	289
BtgZI	GCGATG	1 cut(s)	74
BtsCI	GGATG	3 cut(s)	90, 175, 187
Cac8I	GCNNGC	1 cut(s)	355
CviAII	CATG	3 cut(s)	203, 290, 354
CviJI	RGCY	7 cut(s)	42, 100, 111, 126, 237, 323, 376
CviKI_1	RGCY	7 cut(s)	42, 100, 111, 126, 237, 323, 376
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	289
FaeI	CATG	3 cut(s)	206, 293, 357
FaiI	YATR	6 cut(s)	96, 204, 215, 240, 291, 355
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	3 cut(s)	202, 289, 353
Fnu4HI	GCNGC	4 cut(s)	155, 243, 358, 374
FokI	GGATG	3 cut(s)	77, 182, 194
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	4 cut(s)	155, 243, 358, 374
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	4 cut(s)	155, 243, 358, 374
HaeIII	GGCC	1 cut(s)	376
Hin1II	CATG	3 cut(s)	206, 293, 357
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	2 cut(s)	114, 256
HpyCH4V	TGCA	3 cut(s)	245, 353, 357
HpyF10VI	GCNNNNNNNGC	2 cut(s)	334, 354
HpyF3I	CTNAG	1 cut(s)	324
Hsp92II	CATG	3 cut(s)	206, 293, 357
Kzo9I	GATC	1 cut(s)	10
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	9 cut(s)	41, 120, 147, 164, 238, 241, 327, 331, 363
Lsp1109I	GCAGC	3 cut(s)	141, 229, 369
LweI	GCATC	1 cut(s)	99
MaeI	CTAG	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MboII	GAAGA	3 cut(s)	61, 200, 316
MhlI	GDGCHC	3 cut(s)	44, 330, 350
MluCI	AATT	1 cut(s)	251
MnlI	CCTC	6 cut(s)	110, 116, 160, 166, 178, 190
MroXI	GAANNNNTTC	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	135
Mva1269I	GAATGC	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	334, 354
NcoI	CCATGG	1 cut(s)	289
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	3 cut(s)	206, 293, 357
NlaIV	GGNNCC	2 cut(s)	223, 287
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	357
PaeI	GCATGC	1 cut(s)	357
PctI	GAATGC	1 cut(s)	375
PdmI	GAANNNNTTC	1 cut(s)	284
PkrI	GCNGC	4 cut(s)	156, 244, 359, 375
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	2 cut(s)	223, 287
PstI	CTGCAG	1 cut(s)	247
SatI	GCNGC	4 cut(s)	155, 243, 358, 374
Sau3AI	GATC	1 cut(s)	10
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	3 cut(s)	44, 330, 350
SetI	ASST	3 cut(s)	113, 239, 325
SfaNI	GCATC	1 cut(s)	99
SfcI	CTRYAG	1 cut(s)	243
SphI	GCATGC	1 cut(s)	357
Sse9I	AATT	1 cut(s)	251
SsiI	CCGC	1 cut(s)	373
SspI	AATATT	1 cut(s)	143
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	289
TasI	AATT	1 cut(s)	251
TauI	GCSGC	1 cut(s)	376
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	3 cut(s)	154, 242, 357
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	264
XapI	RAATTY	1 cut(s)	251
XbaI	TCTAGA	1 cut(s)	113
XceI	RCATGY	1 cut(s)	357
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.