Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0016504

Physical Location & Seq

Genomic Coordinates Reverse (-)

13440508 .. 13442987

Gene Structure 2480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g18960.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGTGATGGAAGTAGTAGGAGGAGAAGAAACAGCAGCGTACAGCCCGCGCACCGTGGAGGAGGTTTTCACCGACTTCAAGGGCCGTCGTGCTGCCTTGATCAAAGCTCTCACTACTGACAGGGAGAATCTTTGTTTGTATGGATTCCCGAATGAAGAATGGGAAGTTAATCTACCTGCTGAAGAACTTCCTCCAGAGCTCCCGGAACCTGCTTTGGGCATCAACTTTGCCAGAGATGGAATGCAAGAAAGAGACTGGTTGTCCCTGGTAGCTGTGCACAGTGATGCATGGTTGCTTTCAGTGGCCTTATACTTTGGTGCCAGATTTGGTTTTGACAAGACTGAAAGGGAATGTCTCTTCAATATGATGAATGATCTGCCATCTATCTTCGAGGTTATGGCAGTCATCGCAAAGAGACAGTCAAAGGAGAAGTCATCAGTTTCAAATAATAGCATCCATAGGCCTAAGTCAAGCTCTAAAGGGAGAGGGTCTGAATCTGTCAAACATGCAAAAGTGATGCCAAAGAATGAGGACGAGGGCCTGGATGAGGAAGATGATGATGATGAGCACGGCAAGACTGTCTGTGGTGCATGCGGGGGGAGCTATGCTGCTGATGAATTTTGGATTTGCTGCGACATATGTGAAAAGTGGTTCCATGGAAAATGCGTGAAGATCACTCCTGCCAGAGCCGAGCACATCAAGCACTACAAGTGCCCGTCATGCAGCAACAAGAGAGTCCGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

249

Amino Acids

27.88

Weight (kDa)

5.29

Isoelectric Point (pI)

52.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26210
fragaria_vesca	FvH4_1g08141
malus_domestica	MD02G1086000.v1.1
prunus_persica	Prupe.7G203700_v2.0.a1 Prupe.7G203700_v2.0.a1
pyrus_communis	pycom02g06920 pycom15g18960
rosa_chinensis	RchiOBHm_Chr2g0094211
rosa_laevigata	RLG00000016466
rosa_multiflora	Rmu_sc0002193.1_g000007 Rmu_ssc0000070.1_g000008
rosa_roxburghii	Rroxscaffold_2G00147370
rosa_rugosa	Rorug02G0041800
rosa_samantha	Rh2BG089700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	184, 217
AccB1I	GGYRCC	1 cut(s)	317
AccII	CGCG	1 cut(s)	49
AciI	CCGC	2 cut(s)	47, 594
AcsI	RAATTY	1 cut(s)	617
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	215, 547
AgsI	TTSAA	3 cut(s)	79, 361, 444
AhdI	GACNNNNNGTC	1 cut(s)	259
AjnI	CCWGG	2 cut(s)	264, 540
AluBI	AGCT	5 cut(s)	107, 199, 272, 474, 603
AluI	AGCT	5 cut(s)	107, 199, 272, 474, 603
Alw21I	GWGCWC	4 cut(s)	201, 279, 570, 696
Alw26I	GTCTC	3 cut(s)	246, 359, 409
Alw44I	GTGCAC	1 cut(s)	275
AoxI	GGCC	5 cut(s)	82, 303, 461, 538, 740
ApaLI	GTGCAC	1 cut(s)	275
ApeKI	GCWGC	5 cut(s)	35, 92, 608, 630, 723
ApoI	RAATTY	1 cut(s)	617
ArsI	GACNNNNNNTTYG	4 cut(s)	404, 416, 436, 448
Asp700I	GAANNNNTTC	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	2 cut(s)	82, 538
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	2 cut(s)	16, 61
BaeGI	GKGCMC	2 cut(s)	279, 716
BanI	GGYRCC	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	201
BarI	GAAGNNNNNNTAC	2 cut(s)	156, 188
Bbv12I	GWGCWC	4 cut(s)	201, 279, 570, 696
BbvI	GCAGC	5 cut(s)	47, 79, 595, 617, 735
BccI	CCATC	2 cut(s)	230, 388
BceAI	ACGGC	2 cut(s)	69, 586
BciT130I	CCWGG	2 cut(s)	266, 542
BclI	TGATCA	1 cut(s)	99
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	3 cut(s)	246, 359, 409
BfuAI	ACCTGC	2 cut(s)	184, 217
BisI	GCNGC	5 cut(s)	36, 93, 609, 631, 724
BlsI	GCNGC	5 cut(s)	37, 94, 610, 632, 725
Bme1390I	CCNGG	3 cut(s)	203, 266, 542
BmeRI	GACNNNNNGTC	1 cut(s)	259
BmgT120I	GGNCC	2 cut(s)	82, 538
BmiI	GGNNCC	3 cut(s)	207, 319, 653
BmrFI	CCNGG	3 cut(s)	203, 266, 542
BmsI	GCATC	4 cut(s)	228, 274, 462, 507
BpmI	CTGGAG	1 cut(s)	177
BpuMI	CCSGG	1 cut(s)	203
BsaJI	CCNNGG	3 cut(s)	54, 264, 655
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 547
Bse1I	ACTGG	1 cut(s)	260
BseBI	CCWGG	2 cut(s)	266, 542
BseDI	CCNNGG	3 cut(s)	54, 264, 655
BseGI	GGATG	2 cut(s)	453, 550
BseLI	CCNNNNNNNGG	2 cut(s)	215, 547
BseNI	ACTGG	1 cut(s)	260
BseRI	GAGGAG	2 cut(s)	36, 74
BseSI	GKGCMC	2 cut(s)	279, 716
BseXI	GCAGC	5 cut(s)	47, 79, 595, 617, 735
Bsh1236I	CGCG	1 cut(s)	49
BshFI	GGCC	5 cut(s)	84, 305, 463, 540, 742
BshNI	GGYRCC	1 cut(s)	317
BsiHKAI	GWGCWC	4 cut(s)	201, 279, 570, 696
BsiSI	CCGG	2 cut(s)	203, 739
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	2 cut(s)	215, 547
BsmAI	GTCTC	3 cut(s)	246, 359, 409
BsmFI	GGGAC	1 cut(s)	247
BsmI	GAATGC	1 cut(s)	246
BsnI	GGCC	5 cut(s)	84, 305, 463, 540, 742
Bsp1286I	GDGCHC	5 cut(s)	201, 279, 570, 696, 716
Bsp143I	GATC	3 cut(s)	99, 373, 672
Bsp19I	CCATGG	1 cut(s)	655
BspACI	CCGC	2 cut(s)	47, 594
BspANI	GGCC	5 cut(s)	84, 305, 463, 540, 742
BspFNI	CGCG	1 cut(s)	49
BspLI	GGNNCC	3 cut(s)	207, 319, 653
BspMI	ACCTGC	2 cut(s)	184, 217
BspT107I	GGYRCC	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	260
BssECI	CCNNGG	3 cut(s)	54, 264, 655
BssMI	GATC	3 cut(s)	99, 373, 672
BssT1I	CCWWGG	1 cut(s)	655
Bst2UI	CCWGG	2 cut(s)	266, 542
Bst4CI	ACNGT	4 cut(s)	55, 281, 420, 580
Bst6I	CTCTTC	1 cut(s)	362
BstC8I	GCNNGC	2 cut(s)	47, 592
BstDEI	CTNAG	1 cut(s)	465
BstDSI	CCRYGG	2 cut(s)	54, 655
BstENI	CCTNNNNNAGG	1 cut(s)	545
BstF5I	GGATG	2 cut(s)	453, 550
BstFNI	CGCG	1 cut(s)	49
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	3 cut(s)	102, 376, 675
BstMAI	GTCTC	3 cut(s)	246, 359, 409
BstMBI	GATC	3 cut(s)	99, 373, 672
BstMWI	GCNNNNNNNGC	4 cut(s)	407, 600, 700, 720
BstNI	CCWGG	2 cut(s)	266, 542
BstNSI	RCATGY	2 cut(s)	509, 594
BstSCI	CCNGG	3 cut(s)	201, 264, 540
BstSLI	GKGCMC	2 cut(s)	279, 716
BstUI	CGCG	1 cut(s)	49
BstV1I	GCAGC	5 cut(s)	47, 79, 595, 617, 735
BsuRI	GGCC	5 cut(s)	84, 305, 463, 540, 742
BtgI	CCRYGG	2 cut(s)	54, 655
BtgZI	GCGATG	1 cut(s)	391
BtsCI	GGATG	2 cut(s)	453, 550
BtsIMutI	CAGTG	2 cut(s)	286, 306
BveI	ACCTGC	2 cut(s)	184, 217
Cac8I	GCNNGC	2 cut(s)	47, 592
CfoI	GCGC	1 cut(s)	51
Cfr13I	GGNCC	2 cut(s)	82, 538
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	5 cut(s)	288, 506, 591, 656, 720
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	1 cut(s)	465
DpnI	GATC	3 cut(s)	101, 375, 674
DpnII	GATC	3 cut(s)	99, 373, 672
DriI	GACNNNNNGTC	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	362
Eam1105I	GACNNNNNGTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	362
Ecl136II	GAGCTC	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	655
Eco147I	AGGCCT	1 cut(s)	463
Eco24I	GRGCYC	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	199
EcoNI	CCTNNNNNAGG	1 cut(s)	545
EcoO109I	RGGNCCY	1 cut(s)	538
EcoRII	CCWGG	2 cut(s)	264, 540
EcoT14I	CCWWGG	1 cut(s)	655
EcoT22I	ATGCAT	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	655
FaeI	CATG	5 cut(s)	291, 509, 594, 659, 723
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	5 cut(s)	287, 505, 590, 655, 719
FauI	CCCGC	2 cut(s)	54, 587
FauNDI	CATATG	1 cut(s)	638
FbaI	TGATCA	1 cut(s)	99
Fnu4HI	GCNGC	5 cut(s)	36, 93, 609, 631, 724
FokI	GGATG	2 cut(s)	440, 557
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	5 cut(s)	36, 93, 609, 631, 724
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	5 cut(s)	36, 93, 609, 631, 724
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	5 cut(s)	84, 305, 463, 540, 742
HapII	CCGG	2 cut(s)	203, 739
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	5 cut(s)	291, 509, 594, 659, 723
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HinfI	GANTC	4 cut(s)	127, 144, 494, 735
HpaII	CCGG	2 cut(s)	203, 739
HphI	GGTGA	2 cut(s)	16, 61
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	1 cut(s)	493
Hpy188III	TCNNGA	2 cut(s)	148, 194
Hpy8I	GTNNAC	1 cut(s)	277
Hpy99I	CGWCG	1 cut(s)	90
HpyCH4III	ACNGT	4 cut(s)	55, 281, 420, 580
HpyCH4V	TGCA	6 cut(s)	244, 277, 287, 509, 590, 723
HpyF10VI	GCNNNNNNNGC	4 cut(s)	407, 600, 700, 720
HpyF3I	CTNAG	1 cut(s)	465
Hsp92II	CATG	5 cut(s)	291, 509, 594, 659, 723
HspAI	GCGC	1 cut(s)	49
Ksp22I	TGATCA	1 cut(s)	99
Kzo9I	GATC	3 cut(s)	99, 373, 672
LmnI	GCTCC	2 cut(s)	204, 600
Lsp1109I	GCAGC	5 cut(s)	47, 79, 595, 617, 735
LweI	GCATC	4 cut(s)	228, 274, 462, 507
MalI	GATC	3 cut(s)	101, 375, 674
MboI	GATC	3 cut(s)	99, 373, 672
MboII	GAAGA	7 cut(s)	38, 167, 194, 349, 379, 563, 682
MhlI	GDGCHC	5 cut(s)	201, 279, 570, 696, 716
MluCI	AATT	1 cut(s)	617
MlyI	GAGTC	1 cut(s)	744
MnlI	CCTC	9 cut(s)	14, 52, 55, 201, 385, 479, 523, 529, 541
Mph1103I	ATGCAT	1 cut(s)	289
MroXI	GAANNNNTTC	1 cut(s)	186
MseI	TTAA	1 cut(s)	168
MslI	CAYNNNNRTG	1 cut(s)	282
MspI	CCGG	2 cut(s)	203, 739
MspR9I	CCNGG	3 cut(s)	203, 266, 542
Mva1269I	GAATGC	1 cut(s)	246
MvaI	CCWGG	2 cut(s)	266, 542
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	4 cut(s)	407, 600, 700, 720
NciI	CCSGG	1 cut(s)	203
NcoI	CCATGG	1 cut(s)	655
NdeI	CATATG	1 cut(s)	638
NdeII	GATC	3 cut(s)	99, 373, 672
NlaIII	CATG	5 cut(s)	291, 509, 594, 659, 723
NlaIV	GGNNCC	3 cut(s)	207, 319, 653
NmeAIII	GCCGAG	1 cut(s)	715
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	2 cut(s)	509, 594
PaeI	GCATGC	1 cut(s)	594
PceI	AGGCCT	1 cut(s)	463
PctI	GAATGC	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	186
PfeI	GAWTC	3 cut(s)	127, 144, 494
PfoI	TCCNGGA	1 cut(s)	201
PkrI	GCNGC	5 cut(s)	37, 94, 610, 632, 725
PleI	GAGTC	1 cut(s)	743
PpsI	GAGTC	1 cut(s)	743
Psp124BI	GAGCTC	1 cut(s)	201
Psp6I	CCWGG	2 cut(s)	264, 540
PspGI	CCWGG	2 cut(s)	264, 540
PspN4I	GGNNCC	3 cut(s)	207, 319, 653
PspPI	GGNCC	2 cut(s)	82, 538
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	282
SacI	GAGCTC	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	5 cut(s)	36, 93, 609, 631, 724
Sau3AI	GATC	3 cut(s)	99, 373, 672
Sau96I	GGNCC	2 cut(s)	82, 538
SchI	GAGTC	1 cut(s)	744
ScrFI	CCNGG	3 cut(s)	203, 266, 542
SduI	GDGCHC	5 cut(s)	201, 279, 570, 696, 716
SetI	ASST	9 cut(s)	66, 109, 178, 201, 211, 274, 396, 476, 605
SfaNI	GCATC	4 cut(s)	228, 274, 462, 507
SmiMI	CAYNNNNRTG	1 cut(s)	282
SphI	GCATGC	1 cut(s)	594
Sse9I	AATT	1 cut(s)	617
SseBI	AGGCCT	1 cut(s)	463
SsiI	CCGC	2 cut(s)	47, 594
SstI	GAGCTC	1 cut(s)	201
StuI	AGGCCT	1 cut(s)	463
StyD4I	CCNGG	3 cut(s)	201, 264, 540
StyI	CCWWGG	1 cut(s)	655
TaaI	ACNGT	4 cut(s)	55, 281, 420, 580
TaqI	TCGA	1 cut(s)	390
TasI	AATT	1 cut(s)	617
TfiI	GAWTC	3 cut(s)	127, 144, 494
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	2 cut(s)	286, 306
TseI	GCWGC	5 cut(s)	35, 92, 608, 630, 723
TspDTI	ATGAA	3 cut(s)	168, 383, 630
TspRI	CASTG	2 cut(s)	286, 306
VneI	GTGCAC	1 cut(s)	275
XagI	CCTNNNNNAGG	1 cut(s)	545
XapI	RAATTY	1 cut(s)	617
XceI	RCATGY	2 cut(s)	509, 594
XmnI	GAANNNNTTC	1 cut(s)	186
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.