AT5G26360
TCP Family

T-complex protein 1 subunit

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
9255053 .. 9259028
3976 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G26360.1

Sequence Viewer

Length: 1668 bp
ATGCACGCACCGGTACTCGTTCTGAGCGATTCGTTGAAGCGTGAATCTGGAAGTAAGGTTCATCATGGTAATATCCAAGCTTCCAAGGCTGTTGCTGATATCATTCGTACAACATTGGGTCCTCGTTCTATGTTGAAGATGCTTCTTGATGCTGGTGGAGGGATTGTTGTTACTAATGATGGGAATGCTATTCTTCGTGAGCTAGATGTCGCTCATCCTGCAGCTAAGTCAATGATTGAGTTGAGCCGTACGCAAGATGAAGAAGTTGGTGATGGGACAACGTCTGTTATTGTTCTAGCTGGTGAAATGCTTCACGTTGCAGAAGCGTTTCTTGAGAAGAATTACCATCCCACAGTCATATGCCGAGCTTACATCAAGGCTCTCGAAGATTCTATTGCTGTTCTTGACAAAATTGCTATGTCAATTGATATCAATGACCGTTCACAAGTGCTAGGATTAGTCAAGAGCTGCATAGGGACAAAGTTCACTAGCCAATTTGGAGATCTTATTGCGGATTTGGCTATTGATGCCACTACTACTGTTGGTGTTGATCTTGGACAAGGTTTGAGGGAGGTAGACATTAAAAAGTACATCAAGGTTGAGAAAGTTCCTGGTGGTCAGTTCGAGGACTCTGAGGTTCTTAAAGGAGTTATGTTTAACAAAGATGTTGTTGCTCCTGGTAAAATGAAAAGAAAGATTGTCAACCCACGGATTATTCTTCTTGACTGTCCTCTTGAGTACAAGAAAGGTGAAAATCAAACCAATGCTGAGTTGGTTAGAGAAGAGGACTGGGAAGTGTTGTTGAAGTTGGAAGAGGAATATATCGAGAACATTTGCGTTCAAATACTAAAGTTCAAGCCTGATTTGGTTATCACAGAGAAGGGTCTTAGTGACTTGGCCTGTCACTATTTCAGTAAAGCTGGGGTAAGTGCAATCCGAAGGTTGAGAAAAACTGACAACAACAGAATCGCCAAGGCTTGTGGAGCAGTAATTGTGAACAGGCCCGACGAACTGCAGGAGTCTGATATCGGTACTGGGGCTGGCTTGTTTGAGGTCAAGAAAATTGGAGATGATTTCTTTTCTTTCATTGTTGATTGCAAAGAACCCAAAGCCTGTACTGTACTCTTAAGGGGACCAAGTAAAGATTTCATCAATGAAGTGGAAAGAAATTTACAGGATGCCATGTCTGTTGCAAGAAACATTATCAAAAACCCAAAGCTAGTTCCTGGTGGAGGAGCCACAGAGCTAACCGTTTCTGCCACATTAAAACAGAAGAGTGCAACAATTGAAGGCATAGAAAAGTGGCCTTATGAAGCAGCTGCCATTGCTTTCGAGGCTATTCCACGTACCCTGGCTCAAAACTGTGGGGTTAACGTGATCCGTACTATGACTGCATTGCAAGGGAAGCATGCAAATGGTGAAAACGCATGGACTGGTATTGACGGGAACACTGGTGCAATAGCTGATATGAAAGAGAGCAAGATATGGGATTCGTACAATGTGAAGGCGCAAACTTTCAAGACGGCTATAGAAGCAGCGTGTATGCTTCTAAGGATCGATGATATAGTGAGTGGAATCAAGAAGAAGCAAGCTCCTGGATCTGGACCTTCAAAGCCTACCATTGAGACAGAAGGAGATGCAGACAACGAACAAATTCTTCCCGACTAA

Protein Analysis

555

Amino Acids

60.34

Weight (kDa)

5.56

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 31 - 524 3.5e-159 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 576
AciI CCGC 1 cut(s) 512
AclWI GGATC 3 cut(s) 1372, 1562, 1606
AcsI RAATTY 2 cut(s) 1168, 1653
AfiI CCNNNNNNNGG 2 cut(s) 1232, 1601
AflII CTTAAG 1 cut(s) 1126
AgeI ACCGGT 1 cut(s) 10
AgsI TTSAA 8 cut(s) 37, 136, 805, 842, 856, 1289, 1519, 1611
AjnI CCWGG 5 cut(s) 610, 676, 1225, 1350, 1594
AloI GAACNNNNNNTCC 2 cut(s) 42, 74
Alw26I GTCTC 1 cut(s) 1619
AlwI GGATC 3 cut(s) 1372, 1562, 1606
AoxI GGCC 3 cut(s) 897, 1001, 1304
ApeKI GCWGC 5 cut(s) 221, 468, 1316, 1319, 1535
ApoI RAATTY 2 cut(s) 1168, 1653
AsiGI ACCGGT 1 cut(s) 10
Asp700I GAANNNNTTC 3 cut(s) 309, 327, 1653
AspLEI GCGC 1 cut(s) 1510
AspS9I GGNCC 4 cut(s) 119, 1002, 1133, 1604
AsuHPI GGTGA 4 cut(s) 281, 314, 761, 1430
AvaII GGWCC 3 cut(s) 119, 1133, 1604
BbvI GCAGC 5 cut(s) 233, 455, 1306, 1328, 1547
BccI CCATC 3 cut(s) 173, 266, 354
BceAI ACGGC 2 cut(s) 231, 1539
BciT130I CCWGG 5 cut(s) 612, 678, 1227, 1352, 1596
BcoDI GTCTC 1 cut(s) 1619
BfaI CTAG 5 cut(s) 203, 296, 452, 489, 1220
BfmI CTRYAG 3 cut(s) 219, 1013, 1527
BfrI CTTAAG 1 cut(s) 1126
BglII AGATCT 1 cut(s) 502
BisI GCNGC 5 cut(s) 222, 469, 1317, 1320, 1536
BlsI GCNGC 5 cut(s) 223, 470, 1318, 1321, 1537
Bme1390I CCNGG 5 cut(s) 612, 678, 1227, 1352, 1596
Bme18I GGWCC 3 cut(s) 119, 1133, 1604
BmgT120I GGNCC 4 cut(s) 119, 1002, 1133, 1604
BmiI GGNNCC 3 cut(s) 120, 1134, 1237
BmrFI CCNGG 5 cut(s) 612, 678, 1227, 1352, 1596
BmrI ACTGGG 2 cut(s) 799, 1044
BmsI GCATC 5 cut(s) 129, 139, 517, 1168, 1627
BmuI ACTGGG 2 cut(s) 799, 1044
BpuEI CTTGAG 2 cut(s) 353, 755
Bsa29I ATCGAT 1 cut(s) 1557
BsaAI YACGTR 1 cut(s) 1346
BsaJI CCNNGG 4 cut(s) 84, 707, 972, 1350
BsaWI WCCGGW 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 150, 180
Bsc4I CCNNNNNNNGG 2 cut(s) 1232, 1601
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 4 cut(s) 794, 1039, 1438, 1456
Bse3DI GCAATG 2 cut(s) 1323, 1394
BseBI CCWGG 5 cut(s) 612, 678, 1227, 1352, 1596
BseCI ATCGAT 1 cut(s) 1557
BseDI CCNNGG 4 cut(s) 84, 707, 972, 1350
BseGI GGATG 3 cut(s) 214, 346, 1183
BseLI CCNNNNNNNGG 2 cut(s) 1232, 1601
BseMI GCAATG 2 cut(s) 1323, 1394
BseMII CTCAG 3 cut(s) 14, 624, 759
BseNI ACTGG 4 cut(s) 794, 1039, 1438, 1456
BseRI GAGGAG 1 cut(s) 1248
BseXI GCAGC 5 cut(s) 233, 455, 1306, 1328, 1547
BseYI CCCAGC 1 cut(s) 920
BshFI GGCC 3 cut(s) 899, 1003, 1306
BshTI ACCGGT 1 cut(s) 10
BshVI ATCGAT 1 cut(s) 1557
BsiSI CCGG 1 cut(s) 11
BsiWI CGTACG 1 cut(s) 248
BslFI GGGAC 3 cut(s) 289, 490, 1146
BslI CCNNNNNNNGG 2 cut(s) 1232, 1601
BsmAI GTCTC 1 cut(s) 1619
BsmFI GGGAC 3 cut(s) 289, 490, 1146
BsmI GAATGC 1 cut(s) 190
BsnI GGCC 3 cut(s) 899, 1003, 1306
Bsp143I GATC 5 cut(s) 502, 550, 1377, 1554, 1598
BspACI CCGC 1 cut(s) 512
BspANI GGCC 3 cut(s) 899, 1003, 1306
BspCNI CTCAG 3 cut(s) 15, 625, 760
BspDI ATCGAT 1 cut(s) 1557
BspLI GGNNCC 3 cut(s) 120, 1134, 1237
BspMAI CTGCAG 2 cut(s) 223, 1017
BspPI GGATC 3 cut(s) 1372, 1562, 1606
BspTI CTTAAG 1 cut(s) 1126
BsrDI GCAATG 2 cut(s) 1323, 1394
BsrFI RCCGGY 1 cut(s) 10
BsrI ACTGG 4 cut(s) 794, 1039, 1438, 1456
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 4 cut(s) 84, 707, 972, 1350
BssMI GATC 5 cut(s) 502, 550, 1377, 1554, 1598
BssT1I CCWWGG 2 cut(s) 84, 972
Bst2UI CCWGG 5 cut(s) 612, 678, 1227, 1352, 1596
Bst4CI ACNGT 7 cut(s) 355, 440, 541, 728, 1120, 1252, 1364
Bst6I CTCTTC 3 cut(s) 777, 807, 1268
BstAFI CTTAAG 1 cut(s) 1126
BstBAI YACGTR 1 cut(s) 1346
BstC8I GCNNGC 4 cut(s) 6, 1042, 1410, 1590
BstDEI CTNAG 6 cut(s) 23, 225, 633, 768, 887, 1550
BstDSI CCRYGG 1 cut(s) 707
BstENI CCTNNNNNAGG 1 cut(s) 1230
BstF5I GGATG 3 cut(s) 214, 346, 1183
BstHHI GCGC 1 cut(s) 1510
BstKTI GATC 5 cut(s) 505, 553, 1380, 1557, 1601
BstMAI GTCTC 1 cut(s) 1619
BstMBI GATC 5 cut(s) 502, 550, 1377, 1554, 1598
BstMWI GCNNNNNNNGC 9 cut(s) 86, 218, 518, 527, 983, 1325, 1334, 1405, 1532
BstNI CCWGG 5 cut(s) 612, 678, 1227, 1352, 1596
BstNSI RCATGY 1 cut(s) 1412
BstSCI CCNGG 5 cut(s) 610, 676, 1225, 1350, 1594
BstSFI CTRYAG 3 cut(s) 219, 1013, 1527
BstV1I GCAGC 5 cut(s) 233, 455, 1306, 1328, 1547
BstX2I RGATCY 2 cut(s) 502, 1598
BstYI RGATCY 2 cut(s) 502, 1598
Bsu15I ATCGAT 1 cut(s) 1557
BsuRI GGCC 3 cut(s) 899, 1003, 1306
BsuTUI ATCGAT 1 cut(s) 1557
BtgI CCRYGG 1 cut(s) 707
BtsCI GGATG 3 cut(s) 214, 346, 1183
BtsIMutI CAGTG 1 cut(s) 1449
Cac8I GCNNGC 4 cut(s) 6, 1042, 1410, 1590
CfoI GCGC 1 cut(s) 1510
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 4 cut(s) 119, 1002, 1133, 1604
ClaI ATCGAT 1 cut(s) 1557
CspAI ACCGGT 1 cut(s) 10
CspCI CAANNNNNGTGG 2 cut(s) 961, 996
CviAII CATG 4 cut(s) 65, 1183, 1409, 1428
DdeI CTNAG 6 cut(s) 23, 225, 633, 768, 887, 1550
DpnI GATC 5 cut(s) 504, 552, 1379, 1556, 1600
DpnII GATC 5 cut(s) 502, 550, 1377, 1554, 1598
Eam1104I CTCTTC 3 cut(s) 777, 807, 1268
EarI CTCTTC 3 cut(s) 777, 807, 1268
Eco130I CCWWGG 2 cut(s) 84, 972
Eco32I GATATC 3 cut(s) 100, 430, 1027
Eco47I GGWCC 3 cut(s) 119, 1133, 1604
EcoNI CCTNNNNNAGG 1 cut(s) 1230
EcoO109I RGGNCCY 1 cut(s) 119
EcoRII CCWGG 5 cut(s) 610, 676, 1225, 1350, 1594
EcoRV GATATC 3 cut(s) 100, 430, 1027
EcoT14I CCWWGG 2 cut(s) 84, 972
ErhI CCWWGG 2 cut(s) 84, 972
FaeI CATG 4 cut(s) 68, 1186, 1412, 1431
FalI AAGNNNNNCTT 2 cut(s) 315, 347
FaqI GGGAC 3 cut(s) 289, 490, 1146
FatI CATG 4 cut(s) 64, 1182, 1408, 1427
FauNDI CATATG 1 cut(s) 359
FblI GTMKAC 1 cut(s) 576
Fnu4HI GCNGC 5 cut(s) 222, 469, 1317, 1320, 1536
FokI GGATG 3 cut(s) 201, 333, 1190
Fsp4HI GCNGC 5 cut(s) 222, 469, 1317, 1320, 1536
FspBI CTAG 5 cut(s) 203, 296, 452, 489, 1220
GlaI GCGC 1 cut(s) 1509
GluI GCNGC 5 cut(s) 222, 469, 1317, 1320, 1536
GsaI CCCAGC 1 cut(s) 924
HaeIII GGCC 3 cut(s) 899, 1003, 1306
HapII CCGG 1 cut(s) 11
HhaI GCGC 1 cut(s) 1510
Hin1II CATG 4 cut(s) 68, 1186, 1412, 1431
Hin6I GCGC 1 cut(s) 1508
HinP1I GCGC 1 cut(s) 1508
HincII GTYRAC 2 cut(s) 703, 1372
HindII GTYRAC 2 cut(s) 703, 1372
HindIII AAGCTT 1 cut(s) 78
HinfI GANTC 8 cut(s) 29, 44, 389, 629, 966, 1019, 1490, 1575
HpaI GTTAAC 1 cut(s) 1372
HpaII CCGG 1 cut(s) 11
HphI GGTGA 4 cut(s) 281, 314, 761, 1430
Hpy166II GTNNAC 6 cut(s) 443, 486, 577, 703, 997, 1372
Hpy188I TCNGA 4 cut(s) 24, 634, 938, 1024
Hpy8I GTNNAC 6 cut(s) 443, 486, 577, 703, 997, 1372
Hpy99I CGWCG 1 cut(s) 1010
HpyAV CCTTC 6 cut(s) 874, 933, 1283, 1498, 1617, 1625
HpyCH4III ACNGT 7 cut(s) 355, 440, 541, 728, 1120, 1252, 1364
HpyCH4IV ACGT 4 cut(s) 281, 315, 1345, 1374
HpyF10VI GCNNNNNNNGC 9 cut(s) 86, 218, 518, 527, 983, 1325, 1334, 1405, 1532
HpyF3I CTNAG 6 cut(s) 23, 225, 633, 768, 887, 1550
HpySE526I ACGT 4 cut(s) 281, 315, 1345, 1374
Hsp92II CATG 4 cut(s) 68, 1186, 1412, 1431
HspAI GCGC 1 cut(s) 1508
KspAI GTTAAC 1 cut(s) 1372
Kzo9I GATC 5 cut(s) 502, 550, 1377, 1554, 1598
LmnI GCTCC 4 cut(s) 679, 983, 1235, 1597
Lsp1109I GCAGC 5 cut(s) 233, 455, 1306, 1328, 1547
LweI GCATC 5 cut(s) 129, 139, 517, 1168, 1627
MaeI CTAG 5 cut(s) 203, 296, 452, 489, 1220
MaeII ACGT 4 cut(s) 281, 315, 1345, 1374
MaeIII GTNAC 3 cut(s) 169, 890, 902
MalI GATC 5 cut(s) 504, 552, 1379, 1556, 1600
MboI GATC 5 cut(s) 502, 550, 1377, 1554, 1598
MfeI CAATTG 2 cut(s) 423, 1284
MflI RGATCY 2 cut(s) 502, 1598
MluCI AATT 9 cut(s) 340, 411, 423, 494, 990, 1062, 1168, 1284, 1653
MlyI GAGTC 2 cut(s) 623, 1028
MmeI TCCRAC 1 cut(s) 789
MroXI GAANNNNTTC 3 cut(s) 309, 327, 1653
MseI TTAA 6 cut(s) 582, 642, 657, 1127, 1265, 1371
MslI CAYNNNNRTG 1 cut(s) 1413
MspA1I CMGCKG 1 cut(s) 1319
MspCI CTTAAG 1 cut(s) 1126
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 5 cut(s) 612, 678, 1227, 1352, 1596
MunI CAATTG 2 cut(s) 423, 1284
Mva1269I GAATGC 1 cut(s) 190
MvaI CCWGG 5 cut(s) 612, 678, 1227, 1352, 1596
MwoI GCNNNNNNNGC 9 cut(s) 86, 218, 518, 527, 983, 1325, 1334, 1405, 1532
NdeI CATATG 1 cut(s) 359
NdeII GATC 5 cut(s) 502, 550, 1377, 1554, 1598
NlaIII CATG 4 cut(s) 68, 1186, 1412, 1431
NlaIV GGNNCC 3 cut(s) 120, 1134, 1237
NmeAIII GCCGAG 1 cut(s) 389
NmuCI GTSAC 2 cut(s) 890, 902
NspI RCATGY 1 cut(s) 1412
PaeI GCATGC 1 cut(s) 1412
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PctI GAATGC 1 cut(s) 190
PdmI GAANNNNTTC 3 cut(s) 309, 327, 1653
PfeI GAWTC 6 cut(s) 29, 44, 389, 966, 1490, 1575
Pfl23II CGTACG 1 cut(s) 248
PflFI GACNNNGTC 1 cut(s) 280
PfoI TCCNGGA 1 cut(s) 1594
PinAI ACCGGT 1 cut(s) 10
PkrI GCNGC 5 cut(s) 223, 470, 1318, 1321, 1537
PleI GAGTC 2 cut(s) 623, 1027
PpsI GAGTC 2 cut(s) 623, 1027
Ppu21I YACGTR 1 cut(s) 1346
PpuMI RGGWCCY 1 cut(s) 119
Psp5II RGGWCCY 1 cut(s) 119
Psp6I CCWGG 5 cut(s) 610, 676, 1225, 1350, 1594
PspFI CCCAGC 1 cut(s) 920
PspGI CCWGG 5 cut(s) 610, 676, 1225, 1350, 1594
PspLI CGTACG 1 cut(s) 248
PspN4I GGNNCC 3 cut(s) 120, 1134, 1237
PspPI GGNCC 4 cut(s) 119, 1002, 1133, 1604
PspPPI RGGWCCY 1 cut(s) 119
PstI CTGCAG 2 cut(s) 223, 1017
PsuI RGATCY 2 cut(s) 502, 1598
PsyI GACNNNGTC 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 1319
RseI CAYNNNNRTG 1 cut(s) 1413
SaqAI TTAA 6 cut(s) 582, 642, 657, 1127, 1265, 1371
SatI GCNGC 5 cut(s) 222, 469, 1317, 1320, 1536
Sau3AI GATC 5 cut(s) 502, 550, 1377, 1554, 1598
Sau96I GGNCC 4 cut(s) 119, 1002, 1133, 1604
SchI GAGTC 2 cut(s) 623, 1028
ScrFI CCNGG 5 cut(s) 612, 678, 1227, 1352, 1596
SfaNI GCATC 5 cut(s) 129, 139, 517, 1168, 1627
SfcI CTRYAG 3 cut(s) 219, 1013, 1527
SinI GGWCC 3 cut(s) 119, 1133, 1604
SmiMI CAYNNNNRTG 1 cut(s) 1413
SmlI CTYRAG 3 cut(s) 332, 734, 1126
SmoI CTYRAG 3 cut(s) 332, 734, 1126
SphI GCATGC 1 cut(s) 1412
Sse9I AATT 9 cut(s) 340, 411, 423, 494, 990, 1062, 1168, 1284, 1653
SsiI CCGC 1 cut(s) 512
SspMI CTAG 5 cut(s) 203, 296, 452, 489, 1220
StyD4I CCNGG 5 cut(s) 610, 676, 1225, 1350, 1594
StyI CCWWGG 2 cut(s) 84, 972
TaaI ACNGT 7 cut(s) 355, 440, 541, 728, 1120, 1252, 1364
TaiI ACGT 4 cut(s) 284, 318, 1348, 1377
TaqI TCGA 5 cut(s) 384, 624, 825, 1332, 1557
TasI AATT 9 cut(s) 340, 411, 423, 494, 990, 1062, 1168, 1284, 1653
TatI WGTACW 4 cut(s) 588, 738, 1115, 1120
TfiI GAWTC 6 cut(s) 29, 44, 389, 966, 1490, 1575
Tru1I TTAA 6 cut(s) 582, 642, 657, 1127, 1265, 1371
Tru9I TTAA 6 cut(s) 582, 642, 657, 1127, 1265, 1371
TscAI CASTG 1 cut(s) 1456
TseFI GTSAC 2 cut(s) 890, 902
TseI GCWGC 5 cut(s) 221, 468, 1316, 1319, 1535
Tsp45I GTSAC 2 cut(s) 890, 902
TspDTI ATGAA 8 cut(s) 50, 273, 701, 1075, 1138, 1170, 1326, 1484
TspGWI ACGGA 2 cut(s) 724, 1370
TspRI CASTG 1 cut(s) 1456
Tth111I GACNNNGTC 1 cut(s) 280
Vha464I CTTAAG 1 cut(s) 1126
VpaK11BI GGWCC 3 cut(s) 119, 1133, 1604
XagI CCTNNNNNAGG 1 cut(s) 1230
XapI RAATTY 2 cut(s) 1168, 1653
XceI RCATGY 1 cut(s) 1412
XcmI CCANNNNNNNNNTGG 1 cut(s) 769
XmiI GTMKAC 1 cut(s) 576
XmnI GAANNNNTTC 3 cut(s) 309, 327, 1653
XspI CTAG 5 cut(s) 203, 296, 452, 489, 1220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.