Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0008625

Physical Location & Seq

Genomic Coordinates Reverse (-)

21837309 .. 21842363

Gene Structure 5055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G017080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1671 bp

ATGCAATCCCAAGTGCTCGTTCTCAAGGACTCTTTGAAGCGGGAGTCTGGGAGTAAAGTGCACCATGCTAATATCCAGGCCTCAAAGGCTGTTGCTGACATCATCCGTACAACCTTGGGACCGAGGTCCATGTTAAAGATGCTACTGGATGCTAGTGGAGGTATTGTAGTAACCAATGATGGGAATGCCATTCTGCGAGAATTGGATCTTGCGCACCCAGCAGCAAAGTCGATGATTGAATTAAGCCGCACACAAGATGAAGAAGTCGGTGATGGAACAACATCTGTCATTATTCTTGCTGGTGAGATGTTACATGTTGCCGAAGCATTTATTGACCAGCATTTTCATCCTACTGTCATTTGCCGAGCCTACAATAAAGCCCTGGAAGATGCTATTGCTGTGCTTGACAAAATAGCAATGACCATTGACGTGACAGATCGTGCAACAATGTTGGGGCTGATTAAAAGTTGTATCGGTACAAAGTTTACTGGTCAGTTTGGAGATTTAATTGCTGATTTAGCCCTTGATGCCACTAGAATAGTTGGAGTGGACCTCGGCCAGGGTTTACGAGAAGTGGATATTAAAAAGTACATTAAGGTTGAGAAGGTTCCTGGTGGCCAGTTGGAAGATTCAGTGGTTTTGAAAGGAGTAATGATTAACAAAGATGTCATTGCTCCTGGAAAAATGAGAAGAAAGATTGTCAATCCGCGGATCATGCTTCTTGATTGTCCTCTTGAGTATAAGAAAGGCGAGAACCAAACAAATGCTGAGTTGCTTAAAGAGGAAGATTGGGGACTCCTCCTGAAGTTAGAAGAAGAATACATTGAGGGCCTCTGTGTGCAGATATTGAAGTTCAAACCAGATGTTGTGATTACAGAAAAGGGGCTCAGTGACCTGGCATGCCATTATCTGAGCAAGGCCGGTGTTACTGCAATTAGGAGGTTGAGAAAAACAGATAATAACAGAATTGCCAAGGCTTGTGGGGCAGTTATTGTCAACAGACCCGATGAACTGCAAGAATCTGATATTGGTACTGGGGCTGGATTATTTGAGGTTAAAAAAATTGGAGATGAGTTCTTTACATTCATCGTTGATTGCAAAGATCCCAAGGCATGTACAGTACTCTTAAGAGGTCCGAGTAAGGATATGTTAAACGAAGTGGAAAGAAATTTACAGGATGCCATGGCAGTAGCAAGAAATATCCTGAAGAATCCAAAACTTGTTCCTGGTGGTGGTGCTGCAGAGTTAACTGTTTCTGCTACACTGAAGCAAAAGAGCTCATCTATTGAAGGTATAGAAAAGTGGCCATATGAAGCTGCTGCTGTAGCTTTTGAGGCCATACCACGAACATTGGCTCAGAACTGTGGGGTTAATGTCATTAGAACGATGACAGCGCTACAAGGAAAGCACGCAAATGGTGAAAATGCATGGATTGGCATAGATGGTAACACTGGTGCCATGACTGACGTAAAAGAGAAAAAGATCTGGGATGCCTACAATGTGAAGGCACAGACCTTTAAGACAGCCATAGAAAGTGCTTGCCTACTTCTCAGAATTGATGACATTGTGAGTGGGATTAAGAAGAAGCAGCCTGCTGGAAGCAAAGCTCCTTCAAAGCCTCAAGTTGAGACAGAAGGAGATGCAGATAATGAGCAAATAATTCCCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005975 GO:0006457 GO:0006458 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0032502 GO:0032535 GO:0032989 GO:0032991 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043412 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051716 GO:0055082 GO:0060560 GO:0061077 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0101031 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

556

Amino Acids

60.45

Weight (kDa)

6.04

Isoelectric Point (pI)

33.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	31 - 524	6.3e-157	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26360
fragaria_vesca	FvH4_3g15890 FvH4_3g15890
malus_domestica	MD05G1219100.v1.1 MD10G1201400.v1.1
prunus_persica	Prupe.2G068500_v2.0.a1 Prupe.2G068500_v2.0.a1 Prupe.4G141000_v2.0.a1 Prupe.6G064200_v2.0.a1
pyrus_communis	pycom05g20030 pycom10g17240
rosa_chinensis	RchiOBHm_Chr5g0026711
rosa_laevigata	RLG00000032949
rosa_multiflora	Rmu_sc0027336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052760
rosa_rugosa	Rorug05G0095000
rosa_samantha	Rh4CG005800 Rh5BG185000 Rh5CG204800 Rh5DG187200 Rh5DG243000
rosa_wichuraiana	Rw1G016630 Rw5G017080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	213
AccB1I	GGYRCC	1 cut(s)	1454
AccII	CGCG	1 cut(s)	709
AciI	CCGC	4 cut(s)	40, 247, 707, 709
AclWI	GGATC	3 cut(s)	213, 719, 1097
AcoI	YGGCCR	3 cut(s)	556, 616, 1304
AcsI	RAATTY	1 cut(s)	1168
AcuI	CTGAAG	3 cut(s)	824, 1226, 1286
AfaI	GTAC	6 cut(s)	109, 478, 590, 1033, 1117, 1122
AfeI	AGCGCT	1 cut(s)	1395
AfiI	CCNNNNNNNGG	3 cut(s)	180, 559, 1232
AflII	CTTAAG	1 cut(s)	1126
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	7 cut(s)	37, 239, 643, 850, 856, 1289, 1614
AjiI	CACGTC	1 cut(s)	430
AjnI	CCWGG	7 cut(s)	75, 381, 558, 610, 676, 894, 1225
AjuI	GAANNNNNNNTTGG	3 cut(s)	35, 1011, 1043
AluBI	AGCT	4 cut(s)	1278, 1316, 1328, 1607
AluI	AGCT	4 cut(s)	1278, 1316, 1328, 1607
Alw21I	GWGCWC	3 cut(s)	18, 63, 1280
Alw26I	GTCTC	1 cut(s)	1622
Alw44I	GTGCAC	1 cut(s)	59
AlwI	GGATC	3 cut(s)	213, 719, 1097
Ama87I	CYCGRG	1 cut(s)	1664
Aor51HI	AGCGCT	1 cut(s)	1395
AoxI	GGCC	7 cut(s)	78, 556, 616, 829, 918, 1304, 1335
ApaLI	GTGCAC	1 cut(s)	59
ApeKI	GCWGC	5 cut(s)	221, 1238, 1316, 1319, 1588
ApoI	RAATTY	1 cut(s)	1168
AspLEI	GCGC	2 cut(s)	214, 1396
AspS9I	GGNCC	5 cut(s)	119, 126, 550, 829, 1133
AsuHPI	GGTGA	3 cut(s)	281, 314, 1430
AvaI	CYCGRG	1 cut(s)	1664
AvaII	GGWCC	4 cut(s)	119, 126, 550, 1133
BaeGI	GKGCMC	1 cut(s)	63
BalI	TGGCCA	2 cut(s)	618, 1306
BanI	GGYRCC	1 cut(s)	1454
BanII	GRGCYC	2 cut(s)	888, 1280
Bbv12I	GWGCWC	3 cut(s)	18, 63, 1280
BbvI	GCAGC	5 cut(s)	233, 1225, 1303, 1306, 1600
BccI	CCATC	3 cut(s)	173, 266, 1436
BcgI	CGANNNNNNTGC	2 cut(s)	210, 244
BciT130I	CCWGG	7 cut(s)	77, 383, 560, 612, 678, 896, 1227
BcoDI	GTCTC	1 cut(s)	1622
BfaI	CTAG	2 cut(s)	153, 534
BfmI	CTRYAG	2 cut(s)	1239, 1323
BfoI	RGCGCY	1 cut(s)	1397
BfrI	CTTAAG	1 cut(s)	1126
BglI	GCCNNNNNGGC	1 cut(s)	86
BglII	AGATCT	1 cut(s)	1482
BisI	GCNGC	6 cut(s)	222, 247, 1239, 1317, 1320, 1589
BlsI	GCNGC	6 cut(s)	223, 248, 1240, 1318, 1321, 1590
BmcAI	AGTACT	1 cut(s)	1122
Bme1390I	CCNGG	7 cut(s)	77, 383, 560, 612, 678, 896, 1227
Bme18I	GGWCC	4 cut(s)	119, 126, 550, 1133
BmeT110I	CYCGRG	1 cut(s)	1664
BmgBI	CACGTC	1 cut(s)	430
BmgT120I	GGNCC	5 cut(s)	119, 126, 550, 829, 1133
BmiI	GGNNCC	3 cut(s)	120, 609, 1456
BmrFI	CCNGG	7 cut(s)	77, 383, 560, 612, 678, 896, 1227
BmrI	ACTGGG	1 cut(s)	1044
BmsI	GCATC	7 cut(s)	129, 139, 379, 517, 1168, 1480, 1630
BmuI	ACTGGG	1 cut(s)	1044
BoxI	GACNNNNGTC	1 cut(s)	124
BplI	GAGNNNNNCTC	2 cut(s)	537, 569
BpuEI	CTTGAG	3 cut(s)	8, 755, 1605
BsaJI	CCNNGG	9 cut(s)	114, 122, 381, 553, 559, 707, 972, 1107, 1182
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 559, 1232
Bse118I	RCCGGY	1 cut(s)	920
Bse1I	ACTGG	5 cut(s)	150, 493, 619, 1039, 1456
Bse3DI	GCAATG	2 cut(s)	423, 669
BseBI	CCWGG	7 cut(s)	77, 383, 560, 612, 678, 896, 1227
BseDI	CCNNGG	9 cut(s)	114, 122, 381, 553, 559, 707, 972, 1107, 1182
BseGI	GGATG	5 cut(s)	102, 154, 346, 1183, 1495
BseLI	CCNNNNNNNGG	3 cut(s)	180, 559, 1232
BseMI	GCAATG	2 cut(s)	423, 669
BseMII	CTCAG	5 cut(s)	759, 901, 902, 1370, 1564
BseNI	ACTGG	5 cut(s)	150, 493, 619, 1039, 1456
BseRI	GAGGAG	1 cut(s)	788
BseSI	GKGCMC	1 cut(s)	63
BseXI	GCAGC	5 cut(s)	233, 1225, 1303, 1306, 1600
BseYI	CCCAGC	1 cut(s)	217
BsgI	GTGCAG	1 cut(s)	860
Bsh1236I	CGCG	1 cut(s)	709
BshFI	GGCC	7 cut(s)	80, 558, 618, 831, 920, 1306, 1337
BshNI	GGYRCC	1 cut(s)	1454
BsiHKAI	GWGCWC	3 cut(s)	18, 63, 1280
BsiHKCI	CYCGRG	1 cut(s)	1664
BsiSI	CCGG	1 cut(s)	921
BslFI	GGGAC	2 cut(s)	132, 807
BslI	CCNNNNNNNGG	3 cut(s)	180, 559, 1232
BsmAI	GTCTC	1 cut(s)	1622
BsmFI	GGGAC	2 cut(s)	132, 807
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	7 cut(s)	80, 558, 618, 831, 920, 1306, 1337
BsoBI	CYCGRG	1 cut(s)	1664
Bsp1286I	GDGCHC	4 cut(s)	18, 63, 888, 1280
Bsp1407I	TGTACA	1 cut(s)	1115
Bsp143I	GATC	5 cut(s)	205, 436, 711, 1102, 1482
Bsp19I	CCATGG	1 cut(s)	1182
BspACI	CCGC	4 cut(s)	40, 247, 707, 709
BspANI	GGCC	7 cut(s)	80, 558, 618, 831, 920, 1306, 1337
BspCNI	CTCAG	5 cut(s)	760, 900, 903, 1369, 1563
BspFNI	CGCG	1 cut(s)	709
BspLI	GGNNCC	3 cut(s)	120, 609, 1456
BspMAI	CTGCAG	1 cut(s)	1243
BspPI	GGATC	3 cut(s)	213, 719, 1097
BspT107I	GGYRCC	1 cut(s)	1454
BspTI	CTTAAG	1 cut(s)	1126
BsrDI	GCAATG	2 cut(s)	423, 669
BsrFI	RCCGGY	1 cut(s)	920
BsrGI	TGTACA	1 cut(s)	1115
BsrI	ACTGG	5 cut(s)	150, 493, 619, 1039, 1456
BssAI	RCCGGY	1 cut(s)	920
BssECI	CCNNGG	9 cut(s)	114, 122, 381, 553, 559, 707, 972, 1107, 1182
BssMI	GATC	5 cut(s)	205, 436, 711, 1102, 1482
BssT1I	CCWWGG	4 cut(s)	114, 972, 1107, 1182
Bst2UI	CCWGG	7 cut(s)	77, 383, 560, 612, 678, 896, 1227
Bst4CI	ACNGT	4 cut(s)	355, 1120, 1252, 1364
BstAFI	CTTAAG	1 cut(s)	1126
BstAUI	TGTACA	1 cut(s)	1115
BstC8I	GCNNGC	4 cut(s)	901, 1410, 1540, 1593
BstDEI	CTNAG	5 cut(s)	768, 887, 911, 1356, 1550
BstDSI	CCRYGG	2 cut(s)	707, 1182
BstENI	CCTNNNNNAGG	1 cut(s)	557
BstF5I	GGATG	5 cut(s)	102, 154, 346, 1183, 1495
BstFNI	CGCG	1 cut(s)	709
BstH2I	RGCGCY	1 cut(s)	1397
BstHHI	GCGC	2 cut(s)	214, 1396
BstKTI	GATC	5 cut(s)	208, 439, 714, 1105, 1485
BstMAI	GTCTC	1 cut(s)	1622
BstMBI	GATC	5 cut(s)	205, 436, 711, 1102, 1482
BstMWI	GCNNNNNNNGC	8 cut(s)	86, 218, 518, 527, 715, 983, 1325, 1334
BstNI	CCWGG	7 cut(s)	77, 383, 560, 612, 678, 896, 1227
BstNSI	RCATGY	3 cut(s)	317, 903, 1116
BstPAI	GACNNNNGTC	1 cut(s)	124
BstSCI	CCNGG	7 cut(s)	75, 381, 558, 610, 676, 894, 1225
BstSFI	CTRYAG	2 cut(s)	1239, 1323
BstSLI	GKGCMC	1 cut(s)	63
BstUI	CGCG	1 cut(s)	709
BstV1I	GCAGC	5 cut(s)	233, 1225, 1303, 1306, 1600
BstX2I	RGATCY	3 cut(s)	205, 1102, 1482
BstYI	RGATCY	3 cut(s)	205, 1102, 1482
BsuRI	GGCC	7 cut(s)	80, 558, 618, 831, 920, 1306, 1337
BtgI	CCRYGG	2 cut(s)	707, 1182
BtrI	CACGTC	1 cut(s)	430
BtsCI	GGATG	5 cut(s)	102, 154, 346, 1183, 1495
BtsIMutI	CAGTG	4 cut(s)	639, 895, 1262, 1449
Cac8I	GCNNGC	4 cut(s)	901, 1410, 1540, 1593
CfoI	GCGC	2 cut(s)	214, 1396
Cfr10I	RCCGGY	1 cut(s)	920
Cfr13I	GGNCC	5 cut(s)	119, 126, 550, 829, 1133
Cfr42I	CCGCGG	1 cut(s)	710
Csp6I	GTAC	6 cut(s)	108, 477, 589, 1032, 1116, 1121
CspCI	CAANNNNNGTGG	4 cut(s)	961, 996, 1332, 1367
CviAII	CATG	9 cut(s)	65, 130, 314, 715, 900, 1113, 1183, 1428, 1459
CviQI	GTAC	6 cut(s)	108, 477, 589, 1032, 1116, 1121
DdeI	CTNAG	5 cut(s)	768, 887, 911, 1356, 1550
DpnI	GATC	5 cut(s)	207, 438, 713, 1104, 1484
DpnII	GATC	5 cut(s)	205, 436, 711, 1102, 1482
EaeI	YGGCCR	3 cut(s)	556, 616, 1304
Ecl136II	GAGCTC	1 cut(s)	1278
Eco130I	CCWWGG	4 cut(s)	114, 972, 1107, 1182
Eco147I	AGGCCT	1 cut(s)	80
Eco24I	GRGCYC	2 cut(s)	888, 1280
Eco47I	GGWCC	4 cut(s)	119, 126, 550, 1133
Eco47III	AGCGCT	1 cut(s)	1395
Eco53kI	GAGCTC	1 cut(s)	1278
Eco57I	CTGAAG	3 cut(s)	824, 1226, 1286
Eco88I	CYCGRG	1 cut(s)	1664
EcoICRI	GAGCTC	1 cut(s)	1278
EcoNI	CCTNNNNNAGG	1 cut(s)	557
EcoO109I	RGGNCCY	1 cut(s)	829
EcoRII	CCWGG	7 cut(s)	75, 381, 558, 610, 676, 894, 1225
EcoT14I	CCWWGG	4 cut(s)	114, 972, 1107, 1182
EcoT22I	ATGCAT	1 cut(s)	1429
EcoT38I	GRGCYC	2 cut(s)	888, 1280
ErhI	CCWWGG	4 cut(s)	114, 972, 1107, 1182
FaeI	CATG	9 cut(s)	68, 133, 317, 718, 903, 1116, 1186, 1431, 1462
FaqI	GGGAC	2 cut(s)	132, 807
FatI	CATG	9 cut(s)	64, 129, 313, 714, 899, 1112, 1182, 1427, 1458
FauI	CCCGC	1 cut(s)	33
FauNDI	CATATG	1 cut(s)	1309
Fnu4HI	GCNGC	6 cut(s)	222, 247, 1239, 1317, 1320, 1589
FokI	GGATG	5 cut(s)	89, 161, 333, 1190, 1502
FriOI	GRGCYC	2 cut(s)	888, 1280
Fsp4HI	GCNGC	6 cut(s)	222, 247, 1239, 1317, 1320, 1589
FspBI	CTAG	2 cut(s)	153, 534
FspI	TGCGCA	1 cut(s)	213
GlaI	GCGC	2 cut(s)	213, 1395
GluI	GCNGC	6 cut(s)	222, 247, 1239, 1317, 1320, 1589
GsaI	CCCAGC	1 cut(s)	221
HaeII	RGCGCY	1 cut(s)	1397
HaeIII	GGCC	7 cut(s)	80, 558, 618, 831, 920, 1306, 1337
HapII	CCGG	1 cut(s)	921
HhaI	GCGC	2 cut(s)	214, 1396
Hin1II	CATG	9 cut(s)	68, 133, 317, 718, 903, 1116, 1186, 1431, 1462
Hin6I	GCGC	2 cut(s)	212, 1394
HinP1I	GCGC	2 cut(s)	212, 1394
HincII	GTYRAC	2 cut(s)	997, 1248
HindII	GTYRAC	2 cut(s)	997, 1248
HinfI	GANTC	6 cut(s)	29, 44, 629, 795, 1019, 1210
HpaI	GTTAAC	1 cut(s)	1248
HpaII	CCGG	1 cut(s)	921
HphI	GGTGA	3 cut(s)	281, 314, 1430
Hpy166II	GTNNAC	6 cut(s)	61, 486, 550, 566, 997, 1248
Hpy188I	TCNGA	5 cut(s)	912, 1024, 1137, 1359, 1553
Hpy188III	TCNNGA	5 cut(s)	722, 734, 802, 1204, 1664
Hpy8I	GTNNAC	6 cut(s)	61, 486, 550, 566, 997, 1248
HpyAV	CCTTC	5 cut(s)	598, 1283, 1498, 1620, 1628
HpyCH4III	ACNGT	4 cut(s)	355, 1120, 1252, 1364
HpyCH4IV	ACGT	2 cut(s)	429, 1467
HpyF10VI	GCNNNNNNNGC	8 cut(s)	86, 218, 518, 527, 715, 983, 1325, 1334
HpyF3I	CTNAG	5 cut(s)	768, 887, 911, 1356, 1550
HpySE526I	ACGT	2 cut(s)	429, 1467
Hsp92II	CATG	9 cut(s)	68, 133, 317, 718, 903, 1116, 1186, 1431, 1462
HspAI	GCGC	2 cut(s)	212, 1394
KspAI	GTTAAC	1 cut(s)	1248
KspI	CCGCGG	1 cut(s)	710
Kzo9I	GATC	5 cut(s)	205, 436, 711, 1102, 1482
LmnI	GCTCC	2 cut(s)	679, 1612
Lsp1109I	GCAGC	5 cut(s)	233, 1225, 1303, 1306, 1600
LweI	GCATC	7 cut(s)	129, 139, 379, 517, 1168, 1480, 1630
MaeI	CTAG	2 cut(s)	153, 534
MaeII	ACGT	2 cut(s)	429, 1467
MaeIII	GTNAC	6 cut(s)	169, 309, 430, 890, 925, 1445
MalI	GATC	5 cut(s)	207, 438, 713, 1104, 1484
MboI	GATC	5 cut(s)	205, 436, 711, 1102, 1482
MboII	GAAGA	9 cut(s)	272, 398, 638, 702, 797, 824, 827, 1219, 1594
MflI	RGATCY	3 cut(s)	205, 1102, 1482
MhlI	GDGCHC	4 cut(s)	18, 63, 888, 1280
MlsI	TGGCCA	2 cut(s)	618, 1306
MluCI	AATT	9 cut(s)	200, 239, 507, 933, 966, 1062, 1168, 1554, 1659
MluNI	TGGCCA	2 cut(s)	618, 1306
MlyI	GAGTC	3 cut(s)	23, 53, 789
MmeI	TCCRAC	2 cut(s)	523, 603
Mox20I	TGGCCA	2 cut(s)	618, 1306
Mph1103I	ATGCAT	1 cut(s)	1429
MscI	TGGCCA	2 cut(s)	618, 1306
MslI	CAYNNNNRTG	2 cut(s)	428, 1413
Msp20I	TGGCCA	2 cut(s)	618, 1306
MspA1I	CMGCKG	1 cut(s)	709
MspCI	CTTAAG	1 cut(s)	1126
MspI	CCGG	1 cut(s)	921
MspR9I	CCNGG	7 cut(s)	77, 383, 560, 612, 678, 896, 1227
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	7 cut(s)	77, 383, 560, 612, 678, 896, 1227
MvnI	CGCG	1 cut(s)	709
MwoI	GCNNNNNNNGC	8 cut(s)	86, 218, 518, 527, 715, 983, 1325, 1334
NcoI	CCATGG	1 cut(s)	1182
NdeI	CATATG	1 cut(s)	1309
NdeII	GATC	5 cut(s)	205, 436, 711, 1102, 1482
NlaIII	CATG	9 cut(s)	68, 133, 317, 718, 903, 1116, 1186, 1431, 1462
NlaIV	GGNNCC	3 cut(s)	120, 609, 1456
NmeAIII	GCCGAG	2 cut(s)	389, 534
NmuCI	GTSAC	2 cut(s)	430, 890
NsbI	TGCGCA	1 cut(s)	213
NsiI	ATGCAT	1 cut(s)	1429
NspI	RCATGY	3 cut(s)	317, 903, 1116
PaeI	GCATGC	1 cut(s)	903
PceI	AGGCCT	1 cut(s)	80
PciI	ACATGT	1 cut(s)	313
PctI	GAATGC	1 cut(s)	190
PfeI	GAWTC	3 cut(s)	629, 1019, 1210
PfoI	TCCNGGA	1 cut(s)	676
PkrI	GCNGC	6 cut(s)	223, 248, 1240, 1318, 1321, 1590
PleI	GAGTC	3 cut(s)	23, 52, 789
PpsI	GAGTC	3 cut(s)	23, 52, 789
PscI	ACATGT	1 cut(s)	313
PshAI	GACNNNNGTC	1 cut(s)	124
Psp124BI	GAGCTC	1 cut(s)	1280
Psp6I	CCWGG	7 cut(s)	75, 381, 558, 610, 676, 894, 1225
PspFI	CCCAGC	1 cut(s)	217
PspGI	CCWGG	7 cut(s)	75, 381, 558, 610, 676, 894, 1225
PspN4I	GGNNCC	3 cut(s)	120, 609, 1456
PspPI	GGNCC	5 cut(s)	119, 126, 550, 829, 1133
PstI	CTGCAG	1 cut(s)	1243
PsuI	RGATCY	3 cut(s)	205, 1102, 1482
RsaI	GTAC	6 cut(s)	109, 478, 590, 1033, 1117, 1122
RsaNI	GTAC	6 cut(s)	108, 477, 589, 1032, 1116, 1121
RseI	CAYNNNNRTG	2 cut(s)	428, 1413
SacI	GAGCTC	1 cut(s)	1280
SacII	CCGCGG	1 cut(s)	710
SatI	GCNGC	6 cut(s)	222, 247, 1239, 1317, 1320, 1589
Sau3AI	GATC	5 cut(s)	205, 436, 711, 1102, 1482
Sau96I	GGNCC	5 cut(s)	119, 126, 550, 829, 1133
ScaI	AGTACT	1 cut(s)	1122
SchI	GAGTC	3 cut(s)	23, 53, 789
ScrFI	CCNGG	7 cut(s)	77, 383, 560, 612, 678, 896, 1227
SduI	GDGCHC	4 cut(s)	18, 63, 888, 1280
SfaNI	GCATC	7 cut(s)	129, 139, 379, 517, 1168, 1480, 1630
SfcI	CTRYAG	2 cut(s)	1239, 1323
Sfr303I	CCGCGG	1 cut(s)	710
SgrBI	CCGCGG	1 cut(s)	710
SinI	GGWCC	4 cut(s)	119, 126, 550, 1133
SmiMI	CAYNNNNRTG	2 cut(s)	428, 1413
SmlI	CTYRAG	4 cut(s)	23, 734, 1126, 1620
SmoI	CTYRAG	4 cut(s)	23, 734, 1126, 1620
SphI	GCATGC	1 cut(s)	903
Sse9I	AATT	9 cut(s)	200, 239, 507, 933, 966, 1062, 1168, 1554, 1659
SseBI	AGGCCT	1 cut(s)	80
SsiI	CCGC	4 cut(s)	40, 247, 707, 709
SspMI	CTAG	2 cut(s)	153, 534
SstI	GAGCTC	1 cut(s)	1280
StuI	AGGCCT	1 cut(s)	80
StyD4I	CCNGG	7 cut(s)	75, 381, 558, 610, 676, 894, 1225
StyI	CCWWGG	4 cut(s)	114, 972, 1107, 1182
TaaI	ACNGT	4 cut(s)	355, 1120, 1252, 1364
TaiI	ACGT	2 cut(s)	432, 1470
TaqI	TCGA	1 cut(s)	230
TaqII	GACCGA	1 cut(s)	136
TasI	AATT	9 cut(s)	200, 239, 507, 933, 966, 1062, 1168, 1554, 1659
TatI	WGTACW	3 cut(s)	588, 1115, 1120
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	3 cut(s)	629, 1019, 1210
TscAI	CASTG	4 cut(s)	639, 895, 1269, 1456
TseFI	GTSAC	2 cut(s)	430, 890
TseI	GCWGC	5 cut(s)	221, 1238, 1316, 1319, 1588
Tsp45I	GTSAC	2 cut(s)	430, 890
TspDTI	ATGAA	5 cut(s)	273, 335, 1023, 1075, 1326
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	4 cut(s)	639, 895, 1269, 1456
Vha464I	CTTAAG	1 cut(s)	1126
VneI	GTGCAC	1 cut(s)	59
VpaK11BI	GGWCC	4 cut(s)	119, 126, 550, 1133
XagI	CCTNNNNNAGG	1 cut(s)	557
XapI	RAATTY	1 cut(s)	1168
XceI	RCATGY	3 cut(s)	317, 903, 1116
XspI	CTAG	2 cut(s)	153, 534
ZrmI	AGTACT	1 cut(s)	1122
Zsp2I	ATGCAT	1 cut(s)	1429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.