Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027336.1

Orthogroup ID

OG0008625

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1957

Gene Structure 1957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027336.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 950 bp

ctggtgagatgttacatgttgccgaagcatttattgaccagcattttcatcctactgtcatttgccgagcctacaataaagccctggaagatgctattgctgtgcttgacaaaatagcaatgaccattgacgtgacagatcgtgcaacaatgttggggctgattaaaagttgtatcggtacaaagttcactggtcagttcggagatttaattgctgatttagcccttgatgccactagaatagttggagtggacctcggccagggtttacgagaagtggatattaaaaagtacatcaaggttgagaaggttcctggtggccagttggaagattcagtggttctgaaaggagtaatgattaacaaagatgtcattgctcctggaaaaatgagaagaaagattgtcaatccgcggatcatgcttcttgattgtcctcttgagtataaaaaaggcgagaaccaaacaaatgctgagttgcttaaagaggaagattggggactcctcctgaagttagaagaagaatacattgagggcctttgtgtgcagatattgaagttcaaaccagatgttgttattacagaaaaggggctcagtgacctggcatgccattatctgagcaaggccggtgttactgcaattaggaggttgagaaaaacagataataacagaattgccaaggcttgtggggcagttattgtcaacagacccgatgaactgcaggaatctgatattggtactggggctggattatttgaggttaaaaaaattggagatgagttctttacattcatcattgattgcaaagatcccaaggcatgtacagtactcttaagaggtccgagtaaggatatgttaaacgaagtggaaagaaatttacaggatgccatggcagtagcaagaaatatcctgaagaatccaaaacttgttcctggtggtggtgctgcagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005975 GO:0006457 GO:0006458 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0032502 GO:0032535 GO:0032989 GO:0032991 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043412 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051716 GO:0055082 GO:0060560 GO:0061077 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0101031 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

315

Amino Acids

34.67

Weight (kDa)

5.97

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26360
fragaria_vesca	FvH4_3g15890 FvH4_3g15890
malus_domestica	MD05G1219100.v1.1 MD10G1201400.v1.1
prunus_persica	Prupe.2G068500_v2.0.a1 Prupe.2G068500_v2.0.a1 Prupe.4G141000_v2.0.a1 Prupe.6G064200_v2.0.a1
pyrus_communis	pycom05g20030 pycom10g17240
rosa_chinensis	RchiOBHm_Chr5g0026711
rosa_laevigata	RLG00000032949
rosa_multiflora	Rmu_sc0027336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052760
rosa_rugosa	Rorug05G0095000
rosa_samantha	Rh4CG005800 Rh5BG185000 Rh5CG204800 Rh5DG187200 Rh5DG243000
rosa_wichuraiana	Rw1G016630 Rw5G017080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	411
AciI	CCGC	2 cut(s)	409, 411
AclWI	GGATC	2 cut(s)	421, 799
AcoI	YGGCCR	2 cut(s)	258, 318
AcsI	RAATTY	1 cut(s)	870
AcuI	CTGAAG	2 cut(s)	526, 928
AfaI	GTAC	5 cut(s)	180, 292, 735, 819, 824
AfiI	CCNNNNNNNGG	2 cut(s)	261, 934
AflII	CTTAAG	1 cut(s)	828
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	2 cut(s)	552, 558
AjiI	CACGTC	1 cut(s)	132
AjnI	CCWGG	6 cut(s)	83, 260, 312, 378, 596, 927
AjuI	GAANNNNNNNTTGG	2 cut(s)	713, 745
AlwI	GGATC	2 cut(s)	421, 799
AoxI	GGCC	4 cut(s)	258, 318, 531, 620
ApeKI	GCWGC	1 cut(s)	940
ApoI	RAATTY	1 cut(s)	870
AspS9I	GGNCC	3 cut(s)	252, 531, 835
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	2 cut(s)	252, 835
BalI	TGGCCA	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	590
BbvI	GCAGC	1 cut(s)	927
BciT130I	CCWGG	6 cut(s)	85, 262, 314, 380, 598, 929
BfaI	CTAG	1 cut(s)	236
BfmI	CTRYAG	2 cut(s)	715, 941
BfrI	CTTAAG	1 cut(s)	828
BisI	GCNGC	1 cut(s)	941
BlsI	GCNGC	1 cut(s)	942
BmcAI	AGTACT	1 cut(s)	824
Bme1390I	CCNGG	6 cut(s)	85, 262, 314, 380, 598, 929
Bme18I	GGWCC	2 cut(s)	252, 835
BmgBI	CACGTC	1 cut(s)	132
BmgT120I	GGNCC	3 cut(s)	252, 531, 835
BmiI	GGNNCC	1 cut(s)	311
BmrFI	CCNGG	6 cut(s)	85, 262, 314, 380, 598, 929
BmrI	ACTGGG	1 cut(s)	746
BmsI	GCATC	3 cut(s)	81, 219, 870
BmuI	ACTGGG	1 cut(s)	746
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
BpuEI	CTTGAG	1 cut(s)	457
BsaJI	CCNNGG	7 cut(s)	83, 255, 261, 409, 674, 809, 884
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 934
Bse118I	RCCGGY	1 cut(s)	622
Bse1I	ACTGG	3 cut(s)	195, 321, 741
Bse3DI	GCAATG	2 cut(s)	125, 371
BseBI	CCWGG	6 cut(s)	85, 262, 314, 380, 598, 929
BseDI	CCNNGG	7 cut(s)	83, 255, 261, 409, 674, 809, 884
BseGI	GGATG	2 cut(s)	48, 885
BseLI	CCNNNNNNNGG	2 cut(s)	261, 934
BseMI	GCAATG	2 cut(s)	125, 371
BseMII	CTCAG	3 cut(s)	461, 603, 604
BseNI	ACTGG	3 cut(s)	195, 321, 741
BseRI	GAGGAG	1 cut(s)	490
BseXI	GCAGC	1 cut(s)	927
BsgI	GTGCAG	1 cut(s)	562
Bsh1236I	CGCG	1 cut(s)	411
BshFI	GGCC	4 cut(s)	260, 320, 533, 622
BsiSI	CCGG	1 cut(s)	623
BslFI	GGGAC	1 cut(s)	509
BslI	CCNNNNNNNGG	2 cut(s)	261, 934
BsmFI	GGGAC	1 cut(s)	509
BsnI	GGCC	4 cut(s)	260, 320, 533, 622
Bsp1286I	GDGCHC	1 cut(s)	590
Bsp1407I	TGTACA	1 cut(s)	817
Bsp143I	GATC	3 cut(s)	138, 413, 804
Bsp19I	CCATGG	1 cut(s)	884
BspACI	CCGC	2 cut(s)	409, 411
BspANI	GGCC	4 cut(s)	260, 320, 533, 622
BspCNI	CTCAG	3 cut(s)	462, 602, 605
BspFNI	CGCG	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	311
BspMAI	CTGCAG	2 cut(s)	719, 945
BspPI	GGATC	2 cut(s)	421, 799
BspTI	CTTAAG	1 cut(s)	828
BsrDI	GCAATG	2 cut(s)	125, 371
BsrFI	RCCGGY	1 cut(s)	622
BsrGI	TGTACA	1 cut(s)	817
BsrI	ACTGG	3 cut(s)	195, 321, 741
BssAI	RCCGGY	1 cut(s)	622
BssECI	CCNNGG	7 cut(s)	83, 255, 261, 409, 674, 809, 884
BssMI	GATC	3 cut(s)	138, 413, 804
BssT1I	CCWWGG	3 cut(s)	674, 809, 884
Bst2UI	CCWGG	6 cut(s)	85, 262, 314, 380, 598, 929
Bst4CI	ACNGT	2 cut(s)	57, 822
BstAFI	CTTAAG	1 cut(s)	828
BstAUI	TGTACA	1 cut(s)	817
BstC8I	GCNNGC	1 cut(s)	603
BstDEI	CTNAG	3 cut(s)	470, 589, 613
BstDSI	CCRYGG	2 cut(s)	409, 884
BstENI	CCTNNNNNAGG	1 cut(s)	259
BstF5I	GGATG	2 cut(s)	48, 885
BstFNI	CGCG	1 cut(s)	411
BstKTI	GATC	3 cut(s)	141, 416, 807
BstMBI	GATC	3 cut(s)	138, 413, 804
BstMWI	GCNNNNNNNGC	4 cut(s)	220, 229, 417, 685
BstNI	CCWGG	6 cut(s)	85, 262, 314, 380, 598, 929
BstNSI	RCATGY	3 cut(s)	19, 605, 818
BstSCI	CCNGG	6 cut(s)	83, 260, 312, 378, 596, 927
BstSFI	CTRYAG	2 cut(s)	715, 941
BstUI	CGCG	1 cut(s)	411
BstV1I	GCAGC	1 cut(s)	927
BstX2I	RGATCY	1 cut(s)	804
BstYI	RGATCY	1 cut(s)	804
BsuRI	GGCC	4 cut(s)	260, 320, 533, 622
BtgI	CCRYGG	2 cut(s)	409, 884
BtrI	CACGTC	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	48, 885
BtsIMutI	CAGTG	3 cut(s)	188, 341, 597
Cac8I	GCNNGC	1 cut(s)	603
Cfr10I	RCCGGY	1 cut(s)	622
Cfr13I	GGNCC	3 cut(s)	252, 531, 835
Cfr42I	CCGCGG	1 cut(s)	412
Csp6I	GTAC	5 cut(s)	179, 291, 734, 818, 823
CspCI	CAANNNNNGTGG	2 cut(s)	663, 698
CviAII	CATG	5 cut(s)	16, 417, 602, 815, 885
CviQI	GTAC	5 cut(s)	179, 291, 734, 818, 823
DdeI	CTNAG	3 cut(s)	470, 589, 613
DpnI	GATC	3 cut(s)	140, 415, 806
DpnII	GATC	3 cut(s)	138, 413, 804
EaeI	YGGCCR	2 cut(s)	258, 318
Eco130I	CCWWGG	3 cut(s)	674, 809, 884
Eco24I	GRGCYC	1 cut(s)	590
Eco47I	GGWCC	2 cut(s)	252, 835
Eco57I	CTGAAG	2 cut(s)	526, 928
EcoNI	CCTNNNNNAGG	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	531
EcoRII	CCWGG	6 cut(s)	83, 260, 312, 378, 596, 927
EcoT14I	CCWWGG	3 cut(s)	674, 809, 884
EcoT38I	GRGCYC	1 cut(s)	590
ErhI	CCWWGG	3 cut(s)	674, 809, 884
FaeI	CATG	5 cut(s)	19, 420, 605, 818, 888
FaiI	YATR	7 cut(s)	17, 418, 443, 603, 816, 850, 886
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	5 cut(s)	15, 416, 601, 814, 884
Fnu4HI	GCNGC	1 cut(s)	941
FokI	GGATG	2 cut(s)	35, 892
FriOI	GRGCYC	1 cut(s)	590
Fsp4HI	GCNGC	1 cut(s)	941
FspBI	CTAG	1 cut(s)	236
GluI	GCNGC	1 cut(s)	941
HaeIII	GGCC	4 cut(s)	260, 320, 533, 622
HapII	CCGG	1 cut(s)	623
Hin1II	CATG	5 cut(s)	19, 420, 605, 818, 888
HincII	GTYRAC	1 cut(s)	699
HindII	GTYRAC	1 cut(s)	699
HinfI	GANTC	4 cut(s)	331, 497, 721, 912
HpaII	CCGG	1 cut(s)	623
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	4 cut(s)	188, 252, 268, 699
Hpy188I	TCNGA	5 cut(s)	202, 344, 614, 726, 839
Hpy188III	TCNNGA	4 cut(s)	424, 436, 504, 906
Hpy8I	GTNNAC	4 cut(s)	188, 252, 268, 699
HpyAV	CCTTC	1 cut(s)	300
HpyCH4III	ACNGT	2 cut(s)	57, 822
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	6 cut(s)	145, 543, 634, 717, 800, 943
HpyF10VI	GCNNNNNNNGC	4 cut(s)	220, 229, 417, 685
HpyF3I	CTNAG	3 cut(s)	470, 589, 613
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	5 cut(s)	19, 420, 605, 818, 888
KspI	CCGCGG	1 cut(s)	412
Kzo9I	GATC	3 cut(s)	138, 413, 804
LmnI	GCTCC	1 cut(s)	381
Lsp1109I	GCAGC	1 cut(s)	927
LweI	GCATC	3 cut(s)	81, 219, 870
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	4 cut(s)	11, 132, 592, 627
MalI	GATC	3 cut(s)	140, 415, 806
MboI	GATC	3 cut(s)	138, 413, 804
MboII	GAAGA	7 cut(s)	100, 340, 404, 499, 526, 529, 921
MflI	RGATCY	1 cut(s)	804
MhlI	GDGCHC	1 cut(s)	590
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	5 cut(s)	209, 635, 668, 764, 870
MluNI	TGGCCA	1 cut(s)	320
MlyI	GAGTC	1 cut(s)	491
MmeI	TCCRAC	2 cut(s)	225, 305
MnlI	CCTC	8 cut(s)	265, 443, 477, 511, 522, 635, 747, 826
Mox20I	TGGCCA	1 cut(s)	320
MscI	TGGCCA	1 cut(s)	320
MseI	TTAA	8 cut(s)	164, 208, 284, 359, 479, 758, 829, 853
MslI	CAYNNNNRTG	1 cut(s)	130
Msp20I	TGGCCA	1 cut(s)	320
MspA1I	CMGCKG	1 cut(s)	411
MspCI	CTTAAG	1 cut(s)	828
MspI	CCGG	1 cut(s)	623
MspR9I	CCNGG	6 cut(s)	85, 262, 314, 380, 598, 929
MvaI	CCWGG	6 cut(s)	85, 262, 314, 380, 598, 929
MvnI	CGCG	1 cut(s)	411
MwoI	GCNNNNNNNGC	4 cut(s)	220, 229, 417, 685
NcoI	CCATGG	1 cut(s)	884
NdeII	GATC	3 cut(s)	138, 413, 804
NlaIII	CATG	5 cut(s)	19, 420, 605, 818, 888
NlaIV	GGNNCC	1 cut(s)	311
NmeAIII	GCCGAG	2 cut(s)	91, 236
NmuCI	GTSAC	2 cut(s)	132, 592
NspI	RCATGY	3 cut(s)	19, 605, 818
PaeI	GCATGC	1 cut(s)	605
PciI	ACATGT	1 cut(s)	15
PfeI	GAWTC	3 cut(s)	331, 721, 912
PfoI	TCCNGGA	1 cut(s)	378
PkrI	GCNGC	1 cut(s)	942
PleI	GAGTC	1 cut(s)	491
PpsI	GAGTC	1 cut(s)	491
PscI	ACATGT	1 cut(s)	15
Psp6I	CCWGG	6 cut(s)	83, 260, 312, 378, 596, 927
PspGI	CCWGG	6 cut(s)	83, 260, 312, 378, 596, 927
PspN4I	GGNNCC	1 cut(s)	311
PspPI	GGNCC	3 cut(s)	252, 531, 835
PstI	CTGCAG	2 cut(s)	719, 945
PsuI	RGATCY	1 cut(s)	804
RsaI	GTAC	5 cut(s)	180, 292, 735, 819, 824
RsaNI	GTAC	5 cut(s)	179, 291, 734, 818, 823
RseI	CAYNNNNRTG	1 cut(s)	130
SacII	CCGCGG	1 cut(s)	412
SaqAI	TTAA	8 cut(s)	164, 208, 284, 359, 479, 758, 829, 853
SatI	GCNGC	1 cut(s)	941
Sau3AI	GATC	3 cut(s)	138, 413, 804
Sau96I	GGNCC	3 cut(s)	252, 531, 835
ScaI	AGTACT	1 cut(s)	824
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	6 cut(s)	85, 262, 314, 380, 598, 929
SduI	GDGCHC	1 cut(s)	590
SetI	ASST	8 cut(s)	134, 257, 302, 311, 599, 646, 758, 837
SfaNI	GCATC	3 cut(s)	81, 219, 870
SfcI	CTRYAG	2 cut(s)	715, 941
Sfr303I	CCGCGG	1 cut(s)	412
SgrBI	CCGCGG	1 cut(s)	412
SinI	GGWCC	2 cut(s)	252, 835
SmiMI	CAYNNNNRTG	1 cut(s)	130
SmlI	CTYRAG	2 cut(s)	436, 828
SmoI	CTYRAG	2 cut(s)	436, 828
SphI	GCATGC	1 cut(s)	605
Sse9I	AATT	5 cut(s)	209, 635, 668, 764, 870
SsiI	CCGC	2 cut(s)	409, 411
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	6 cut(s)	83, 260, 312, 378, 596, 927
StyI	CCWWGG	3 cut(s)	674, 809, 884
TaaI	ACNGT	2 cut(s)	57, 822
TaiI	ACGT	1 cut(s)	134
TasI	AATT	5 cut(s)	209, 635, 668, 764, 870
TatI	WGTACW	3 cut(s)	290, 817, 822
TfiI	GAWTC	3 cut(s)	331, 721, 912
Tru1I	TTAA	8 cut(s)	164, 208, 284, 359, 479, 758, 829, 853
Tru9I	TTAA	8 cut(s)	164, 208, 284, 359, 479, 758, 829, 853
TscAI	CASTG	3 cut(s)	195, 341, 597
TseFI	GTSAC	2 cut(s)	132, 592
TseI	GCWGC	1 cut(s)	940
Tsp45I	GTSAC	2 cut(s)	132, 592
TspDTI	ATGAA	3 cut(s)	37, 725, 777
TspRI	CASTG	3 cut(s)	195, 341, 597
Vha464I	CTTAAG	1 cut(s)	828
VpaK11BI	GGWCC	2 cut(s)	252, 835
XagI	CCTNNNNNAGG	1 cut(s)	259
XapI	RAATTY	1 cut(s)	870
XceI	RCATGY	3 cut(s)	19, 605, 818
XspI	CTAG	1 cut(s)	236
ZrmI	AGTACT	1 cut(s)	824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.