pycom05g20030
TCP Family

T-complex protein 1 subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
22941396 .. 22946581
5186 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g20030.4

Sequence Viewer

Length: 1536 bp
ATGACCGATTTTGATCATAAATATAAAGTTATCGTGGGTCTCTCCGTCCCATTTTGCAGACCTATTTCGCACTACCAGGGTTTCACTAAAATCTCACTTTCGGCGTTTCCCTCGCATAAAAACCTCACCGGACTTCTCTTCTTCTCCTTCTTCTTCCTTCCTCCTCACACTCCACAGTTTCACACAGATCTCGCCATCAACATGCAAGCTCCAGTGCTAGTCCTCAAAGATTCATTGAAGCGTGAGTCGGGGACTAAAGTACACCATGGAAATATCCAGGCATCGAAGGCTGTTGCTGACATAATCCGGACAACCTTGGGTCCTCGGTCCATGCTCAAGATGCTACTTGACGCTAGTGGAGGAATTGTAGTGACTAATGATGGAAATGCGATTCTGCGTGAATTGGATCTTGCTCACCCAGCAGCAAAGTCAATGATTGAATTAAGTCGCACACAAGATGAAGAAGTAGGCGATGGAACAACATCTGTCATTGTCCTTGCTGGTGTAGCTGGTGAGATGCTCCATGTTGCAGAAGCATTTATTGACAAGCACTATCATCCTACTGTTATTTGCCGGGCCTACAACAAAGCTCTGGAGGATGCTATTGGTGTTCTTGACAAAATAGCAATGGACATTGATGTGAAGGATCGTGCAACAATGTTGGGACTGGTCAAGAGCTGTATTGGTACAAAGTTCACTAGTCAGTTTGGGGATTTAATTGCTGATTTAGCGCTTGATGCCACCACAATAGTGGGGGTGGACCTTGGCCAGGGTTTGCGAGAAGTGGATATCAAAAAGTACATTAAGGTTGAGAAGGTTCCTGGTGGCCAGTTGGAAGATTCAATGGTTCTGAAAGGAGTAATGTTTAACAAAGATGTTATCGCACCTGGAAAAATGAGAAGAAAGATTGTTAACCCAAGGATCATTCTTCTTGATTGTCCTCTTGAGTATAAGAAAGGTGAGAACCAAACAAATGCTGAGTTACTTAAAGAAGAAGATTGGGGAGTCCTACTAAAATTGGAAGAAGAATACATTGAGAGCCTCTGCGTGCAGATATTGAAGTTTAAGCCAGATGTGGTTATTACAGAAAAGGGCCTTAGTGACTTGGCATGCCATTACCTAAGCAAGGCTGGCGTCAGTGCAATCAGGAGGTTGCGAAAAACAGACAATAACCGAATTGCTAAGGCCTGTGGGGCAGTTATTGTTAACAGACCAGATGAATTGCAAGAGTCTGATGTTGGTACAGGGGCTGGGCTATTTGAGGTCAAGAAAATTGGTGATGAGTTTTTTGCATTCATTGTTGATTGCAAAGATCCCAAAGCATGTACTATACTCTTAAGAGGCCCTAGTAAGGATCTCTTAAATGAAGTGGAAAGAAATTTGCAGGATGCTATGTCAGTAGCAAGAAACATCCTCAAAAATCCAAAACTTGTTCCTGGTGGTGGTGCTACAGAGTTAACTGTATCGGCAACATTGAAGCAAAATAGTTCATCTGTAGAAGGTATCGAAAAGGTAAGCGCACTTTTCCTCATATAA

Protein Analysis

512

Amino Acids

55.91

Weight (kDa)

6.65

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 306
AclWI GGATC 5 cut(s) 414, 654, 929, 1307, 1362
AcoI YGGCCR 2 cut(s) 766, 826
AcsI RAATTY 1 cut(s) 1378
AcyI GRCGYC 1 cut(s) 1134
AfaI GTAC 5 cut(s) 261, 688, 800, 1243, 1327
AfeI AGCGCT 1 cut(s) 732
AfiI CCNNNNNNNGG 4 cut(s) 769, 1126, 1351, 1442
AflII CTTAAG 1 cut(s) 1336
AgsI TTSAA 5 cut(s) 238, 440, 843, 1060, 1477
AhlI ACTAGT 1 cut(s) 698
AjnI CCWGG 6 cut(s) 75, 276, 768, 820, 886, 1435
AleI CACNNNNGTG 1 cut(s) 749
AluBI AGCT 4 cut(s) 209, 509, 590, 678
AluI AGCT 4 cut(s) 209, 509, 590, 678
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 5 cut(s) 414, 654, 929, 1307, 1362
AlwNI CAGNNNCTG 1 cut(s) 1250
Aor13HI TCCGGA 1 cut(s) 306
Aor51HI AGCGCT 1 cut(s) 732
AoxI GGCC 6 cut(s) 576, 766, 826, 1093, 1185, 1342
ApeKI GCWGC 1 cut(s) 422
ApoI RAATTY 1 cut(s) 1378
AspLEI GCGC 2 cut(s) 733, 1520
AspS9I GGNCC 6 cut(s) 320, 327, 576, 760, 1093, 1343
AsuC2I CCSGG 1 cut(s) 575
AsuHPI GGTGA 5 cut(s) 118, 407, 524, 971, 1289
AvaII GGWCC 3 cut(s) 320, 327, 760
BalI TGGCCA 2 cut(s) 768, 828
BbvI GCAGC 1 cut(s) 434
BccI CCATC 3 cut(s) 203, 374, 467
BciT130I CCWGG 6 cut(s) 77, 278, 770, 822, 888, 1437
BclI TGATCA 1 cut(s) 13
BcnI CCSGG 1 cut(s) 575
BcoDI GTCTC 1 cut(s) 44
BcuI ACTAGT 1 cut(s) 698
BfaI CTAG 4 cut(s) 218, 354, 699, 1347
BfmI CTRYAG 2 cut(s) 1449, 1494
BfoI RGCGCY 1 cut(s) 734
BfrI CTTAAG 1 cut(s) 1336
BglI GCCNNNNNGGC 1 cut(s) 1193
BglII AGATCT 1 cut(s) 187
BisI GCNGC 1 cut(s) 423
BlsI GCNGC 1 cut(s) 424
Bme1390I CCNGG 7 cut(s) 77, 278, 575, 770, 822, 888, 1437
Bme18I GGWCC 3 cut(s) 320, 327, 760
BmgT120I GGNCC 6 cut(s) 320, 327, 576, 760, 1093, 1343
BmiI GGNNCC 2 cut(s) 321, 819
BmrFI CCNGG 7 cut(s) 77, 278, 575, 770, 822, 888, 1437
BmsI GCATC 6 cut(s) 290, 330, 507, 589, 727, 1378
BpmI CTGGAG 2 cut(s) 195, 614
Bpu10I CCTNAGC 2 cut(s) 1121, 1182
BpuEI CTTGAG 2 cut(s) 320, 965
BpuMI CCSGG 1 cut(s) 575
BsaBI GATNNNNATC 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 1134
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 7 cut(s) 76, 265, 315, 323, 763, 769, 917
BsaWI WCCGGW 2 cut(s) 128, 306
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bsc4I CCNNNNNNNGG 4 cut(s) 769, 1126, 1351, 1442
Bse1I ACTGG 3 cut(s) 212, 672, 829
Bse3DI GCAATG 1 cut(s) 633
Bse8I GATNNNNATC 1 cut(s) 12
BseAI TCCGGA 1 cut(s) 306
BseBI CCWGG 6 cut(s) 77, 278, 770, 822, 888, 1437
BseDI CCNNGG 7 cut(s) 76, 265, 315, 323, 763, 769, 917
BseGI GGATG 4 cut(s) 556, 604, 1393, 1410
BseJI GATNNNNATC 1 cut(s) 12
BseLI CCNNNNNNNGG 4 cut(s) 769, 1126, 1351, 1442
BseMI GCAATG 1 cut(s) 633
BseMII CTCAG 1 cut(s) 969
BseNI ACTGG 3 cut(s) 212, 672, 829
BseRI GAGGAG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 434
BseYI CCCAGC 2 cut(s) 418, 1250
BsgI GTGCAG 1 cut(s) 1070
BshFI GGCC 6 cut(s) 578, 768, 828, 1095, 1187, 1344
BsiSI CCGG 3 cut(s) 129, 307, 574
BslFI GGGAC 3 cut(s) 32, 265, 678
BslI CCNNNNNNNGG 4 cut(s) 769, 1126, 1351, 1442
BsmAI GTCTC 1 cut(s) 44
BsmFI GGGAC 3 cut(s) 32, 265, 678
BsmI GAATGC 1 cut(s) 1292
BsnI GGCC 6 cut(s) 578, 768, 828, 1095, 1187, 1344
Bso31I GGTCTC 1 cut(s) 44
Bsp13I TCCGGA 1 cut(s) 306
Bsp143I GATC 7 cut(s) 13, 187, 406, 646, 921, 1312, 1354
Bsp19I CCATGG 1 cut(s) 265
BspANI GGCC 6 cut(s) 578, 768, 828, 1095, 1187, 1344
BspCNI CTCAG 1 cut(s) 970
BspEI TCCGGA 1 cut(s) 306
BspLI GGNNCC 2 cut(s) 321, 819
BspPI GGATC 5 cut(s) 414, 654, 929, 1307, 1362
BspTI CTTAAG 1 cut(s) 1336
BspTNI GGTCTC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 633
BsrI ACTGG 3 cut(s) 212, 672, 829
BssECI CCNNGG 7 cut(s) 76, 265, 315, 323, 763, 769, 917
BssMI GATC 7 cut(s) 13, 187, 406, 646, 921, 1312, 1354
BssNI GRCGYC 1 cut(s) 1134
BssT1I CCWWGG 4 cut(s) 265, 315, 763, 917
Bst2UI CCWGG 6 cut(s) 77, 278, 770, 822, 888, 1437
Bst4CI ACNGT 3 cut(s) 177, 565, 1462
Bst6I CTCTTC 1 cut(s) 143
BstACI GRCGYC 1 cut(s) 1134
BstAFI CTTAAG 1 cut(s) 1336
BstC8I GCNNGC 4 cut(s) 207, 1049, 1111, 1132
BstDEI CTNAG 4 cut(s) 978, 1097, 1121, 1182
BstDSI CCRYGG 1 cut(s) 265
BstENI CCTNNNNNAGG 2 cut(s) 767, 1124
BstF5I GGATG 4 cut(s) 556, 604, 1393, 1410
BstH2I RGCGCY 1 cut(s) 734
BstHHI GCGC 2 cut(s) 733, 1520
BstKTI GATC 7 cut(s) 16, 190, 409, 649, 924, 1315, 1357
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 7 cut(s) 13, 187, 406, 646, 921, 1312, 1354
BstMWI GCNNNNNNNGC 8 cut(s) 287, 340, 419, 506, 728, 737, 1131, 1193
BstNI CCWGG 6 cut(s) 77, 278, 770, 822, 888, 1437
BstNSI RCATGY 3 cut(s) 205, 1113, 1326
BstSCI CCNGG 7 cut(s) 75, 276, 573, 768, 820, 886, 1435
BstSFI CTRYAG 2 cut(s) 1449, 1494
BstV1I GCAGC 1 cut(s) 434
BstX2I RGATCY 4 cut(s) 187, 406, 1312, 1354
BstXI CCANNNNNNTGG 1 cut(s) 751
BstYI RGATCY 4 cut(s) 187, 406, 1312, 1354
BsuRI GGCC 6 cut(s) 578, 768, 828, 1095, 1187, 1344
BtgI CCRYGG 1 cut(s) 265
BtgZI GCGATG 1 cut(s) 486
BtsCI GGATG 4 cut(s) 556, 604, 1393, 1410
BtsIMutI CAGTG 2 cut(s) 219, 1144
Cac8I GCNNGC 4 cut(s) 207, 1049, 1111, 1132
CaiI CAGNNNCTG 1 cut(s) 1250
CfoI GCGC 2 cut(s) 733, 1520
Cfr13I GGNCC 6 cut(s) 320, 327, 576, 760, 1093, 1343
CseI GACGC 2 cut(s) 359, 1123
Csp6I GTAC 5 cut(s) 260, 687, 799, 1242, 1326
CviAII CATG 6 cut(s) 202, 266, 331, 524, 1110, 1323
CviQI GTAC 5 cut(s) 260, 687, 799, 1242, 1326
DdeI CTNAG 4 cut(s) 978, 1097, 1121, 1182
DpnI GATC 7 cut(s) 15, 189, 408, 648, 923, 1314, 1356
DpnII GATC 7 cut(s) 13, 187, 406, 646, 921, 1312, 1354
EaeI YGGCCR 2 cut(s) 766, 826
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco130I CCWWGG 4 cut(s) 265, 315, 763, 917
Eco147I AGGCCT 1 cut(s) 1187
Eco31I GGTCTC 1 cut(s) 44
Eco32I GATATC 1 cut(s) 790
Eco47I GGWCC 3 cut(s) 320, 327, 760
Eco47III AGCGCT 1 cut(s) 732
EcoNI CCTNNNNNAGG 2 cut(s) 767, 1124
EcoO109I RGGNCCY 3 cut(s) 320, 1093, 1343
EcoRII CCWGG 6 cut(s) 75, 276, 768, 820, 886, 1435
EcoRV GATATC 1 cut(s) 790
EcoT14I CCWWGG 4 cut(s) 265, 315, 763, 917
ErhI CCWWGG 4 cut(s) 265, 315, 763, 917
FaeI CATG 6 cut(s) 205, 269, 334, 527, 1113, 1326
FalI AAGNNNNNCTT 2 cut(s) 1343, 1375
FaqI GGGAC 3 cut(s) 32, 265, 678
FatI CATG 6 cut(s) 201, 265, 330, 523, 1109, 1322
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 423
FokI GGATG 4 cut(s) 543, 611, 1397, 1400
Fsp4HI GCNGC 1 cut(s) 423
FspBI CTAG 4 cut(s) 218, 354, 699, 1347
GlaI GCGC 2 cut(s) 732, 1519
GluI GCNGC 1 cut(s) 423
GsaI CCCAGC 2 cut(s) 422, 1254
GsuI CTGGAG 2 cut(s) 195, 614
HaeII RGCGCY 1 cut(s) 734
HaeIII GGCC 6 cut(s) 578, 768, 828, 1095, 1187, 1344
HapII CCGG 3 cut(s) 129, 307, 574
HgaI GACGC 2 cut(s) 359, 1123
HhaI GCGC 2 cut(s) 733, 1520
Hin1I GRCGYC 1 cut(s) 1134
Hin1II CATG 6 cut(s) 205, 269, 334, 527, 1113, 1326
Hin6I GCGC 2 cut(s) 731, 1518
HinP1I GCGC 2 cut(s) 731, 1518
HincII GTYRAC 3 cut(s) 913, 1207, 1458
HindII GTYRAC 3 cut(s) 913, 1207, 1458
HinfI GANTC 6 cut(s) 230, 245, 391, 839, 1005, 1229
HpaI GTTAAC 3 cut(s) 913, 1207, 1458
HpaII CCGG 3 cut(s) 129, 307, 574
HphI GGTGA 5 cut(s) 118, 407, 524, 971, 1289
Hpy166II GTNNAC 6 cut(s) 262, 696, 760, 913, 1207, 1458
Hpy188I TCNGA 2 cut(s) 852, 1234
Hpy188III TCNNGA 9 cut(s) 307, 337, 593, 614, 673, 932, 944, 1147, 1267
Hpy8I GTNNAC 6 cut(s) 262, 696, 760, 913, 1207, 1458
HpyAV CCTTC 6 cut(s) 157, 167, 280, 637, 808, 1493
HpyCH4III ACNGT 3 cut(s) 177, 565, 1462
HpyF10VI GCNNNNNNNGC 8 cut(s) 287, 340, 419, 506, 728, 737, 1131, 1193
HpyF3I CTNAG 4 cut(s) 978, 1097, 1121, 1182
Hsp92I GRCGYC 1 cut(s) 1134
Hsp92II CATG 6 cut(s) 205, 269, 334, 527, 1113, 1326
HspAI GCGC 2 cut(s) 731, 1518
Kpn2I TCCGGA 1 cut(s) 306
Ksp22I TGATCA 1 cut(s) 13
KspAI GTTAAC 3 cut(s) 913, 1207, 1458
Kzo9I GATC 7 cut(s) 13, 187, 406, 646, 921, 1312, 1354
LmnI GCTCC 2 cut(s) 214, 525
Lsp1109I GCAGC 1 cut(s) 434
LweI GCATC 6 cut(s) 290, 330, 507, 589, 727, 1378
MaeI CTAG 4 cut(s) 218, 354, 699, 1347
MaeIII GTNAC 3 cut(s) 370, 981, 1100
MalI GATC 7 cut(s) 15, 189, 408, 648, 923, 1314, 1356
MboI GATC 7 cut(s) 13, 187, 406, 646, 921, 1312, 1354
MflI RGATCY 4 cut(s) 187, 406, 1312, 1354
MlsI TGGCCA 2 cut(s) 768, 828
MluCI AATT 9 cut(s) 363, 401, 440, 717, 1016, 1176, 1220, 1272, 1378
MluNI TGGCCA 2 cut(s) 768, 828
MlyI GAGTC 3 cut(s) 254, 1014, 1238
MmeI TCCRAC 1 cut(s) 813
Mox20I TGGCCA 2 cut(s) 768, 828
MroI TCCGGA 1 cut(s) 306
MscI TGGCCA 2 cut(s) 768, 828
MslI CAYNNNNRTG 3 cut(s) 200, 638, 749
Msp20I TGGCCA 2 cut(s) 768, 828
MspCI CTTAAG 1 cut(s) 1336
MspI CCGG 3 cut(s) 129, 307, 574
MspR9I CCNGG 7 cut(s) 77, 278, 575, 770, 822, 888, 1437
Mva1269I GAATGC 1 cut(s) 1292
MvaI CCWGG 6 cut(s) 77, 278, 770, 822, 888, 1437
MwoI GCNNNNNNNGC 8 cut(s) 287, 340, 419, 506, 728, 737, 1131, 1193
NciI CCSGG 1 cut(s) 575
NcoI CCATGG 1 cut(s) 265
NdeII GATC 7 cut(s) 13, 187, 406, 646, 921, 1312, 1354
NlaIII CATG 6 cut(s) 205, 269, 334, 527, 1113, 1326
NlaIV GGNNCC 2 cut(s) 321, 819
NmuCI GTSAC 2 cut(s) 370, 1100
NspI RCATGY 3 cut(s) 205, 1113, 1326
OliI CACNNNNGTG 1 cut(s) 749
PaeI GCATGC 1 cut(s) 1113
PceI AGGCCT 1 cut(s) 1187
PctI GAATGC 1 cut(s) 1292
PfeI GAWTC 3 cut(s) 230, 391, 839
PkrI GCNGC 1 cut(s) 424
PleI GAGTC 3 cut(s) 253, 1013, 1237
PpsI GAGTC 3 cut(s) 253, 1013, 1237
PpuMI RGGWCCY 1 cut(s) 320
Psp5II RGGWCCY 1 cut(s) 320
Psp6I CCWGG 6 cut(s) 75, 276, 768, 820, 886, 1435
PspFI CCCAGC 2 cut(s) 418, 1250
PspGI CCWGG 6 cut(s) 75, 276, 768, 820, 886, 1435
PspN4I GGNNCC 2 cut(s) 321, 819
PspPI GGNCC 6 cut(s) 320, 327, 576, 760, 1093, 1343
PspPPI RGGWCCY 1 cut(s) 320
PstNI CAGNNNCTG 1 cut(s) 1250
PsuI RGATCY 4 cut(s) 187, 406, 1312, 1354
RsaI GTAC 5 cut(s) 261, 688, 800, 1243, 1327
RsaNI GTAC 5 cut(s) 260, 687, 799, 1242, 1326
RseI CAYNNNNRTG 3 cut(s) 200, 638, 749
SatI GCNGC 1 cut(s) 423
Sau3AI GATC 7 cut(s) 13, 187, 406, 646, 921, 1312, 1354
Sau96I GGNCC 6 cut(s) 320, 327, 576, 760, 1093, 1343
SchI GAGTC 3 cut(s) 254, 1014, 1238
ScrFI CCNGG 7 cut(s) 77, 278, 575, 770, 822, 888, 1437
SfaNI GCATC 6 cut(s) 290, 330, 507, 589, 727, 1378
SfcI CTRYAG 2 cut(s) 1449, 1494
SinI GGWCC 3 cut(s) 320, 327, 760
SmiMI CAYNNNNRTG 3 cut(s) 200, 638, 749
SmlI CTYRAG 3 cut(s) 335, 944, 1336
SmoI CTYRAG 3 cut(s) 335, 944, 1336
SpeI ACTAGT 1 cut(s) 698
SphI GCATGC 1 cut(s) 1113
Sse9I AATT 9 cut(s) 363, 401, 440, 717, 1016, 1176, 1220, 1272, 1378
SseBI AGGCCT 1 cut(s) 1187
SspMI CTAG 4 cut(s) 218, 354, 699, 1347
StuI AGGCCT 1 cut(s) 1187
StyD4I CCNGG 7 cut(s) 75, 276, 573, 768, 820, 886, 1435
StyI CCWWGG 4 cut(s) 265, 315, 763, 917
TaaI ACNGT 3 cut(s) 177, 565, 1462
TaqI TCGA 2 cut(s) 284, 1506
TaqII GACCGA 2 cut(s) 20, 315
TasI AATT 9 cut(s) 363, 401, 440, 717, 1016, 1176, 1220, 1272, 1378
TatI WGTACW 3 cut(s) 259, 798, 1325
TfiI GAWTC 3 cut(s) 230, 391, 839
TscAI CASTG 2 cut(s) 219, 1144
TseFI GTSAC 2 cut(s) 370, 1100
TseI GCWGC 1 cut(s) 422
Tsp45I GTSAC 2 cut(s) 370, 1100
TspDTI ATGAA 6 cut(s) 222, 474, 1233, 1285, 1380, 1479
TspGWI ACGGA 1 cut(s) 34
TspRI CASTG 2 cut(s) 219, 1144
Vha464I CTTAAG 1 cut(s) 1336
VpaK11BI GGWCC 3 cut(s) 320, 327, 760
XagI CCTNNNNNAGG 2 cut(s) 767, 1124
XapI RAATTY 1 cut(s) 1378
XceI RCATGY 3 cut(s) 205, 1113, 1326
XcmI CCANNNNNNNNNTGG 1 cut(s) 748
XspI CTAG 4 cut(s) 218, 354, 699, 1347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.