Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008625

Physical Location & Seq

Genomic Coordinates Reverse (-)

1013122 .. 1014908

Gene Structure 1787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG005800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAAGAAGTCGGTGATGGAACAACATCTGTCATTATTCTTGCTGGTGAGATGTTACACGTTGCCGAAGCATTTATTGACCAGCATTTTCATCCTACTGTCATTTGCCGAGGATTTAGCCCTTGATGCCACTAGAATAGTTGGAGTGGACCTCGGCCAGGGTTTACGAGAAGTGGATATTAAAAAGTACATCAAGGTTGAGAAGGTTCCTGGTGGCCAGTTGGAAGATTCAGTGGTTCTGAAAGGAGTAATGATTAACAAAGATGTCATTGCTCCTGGAAAAATGAGAAGAAAGATTGTCAATCCGCGGATCATGCTTCTTGATTGTCCTCTTGAGTATAAGAAAGGCGTGAACCAAACAAATGCTGAGTTGCTTAAAGAGGAAGATTGGGGACTCCTCCTGAAGTTAGAAGAAGAATACATTGAGGGCCTCTGTGTGCAGATATTAAAGAGGTTGAGAAAAACAGATAATAACAGAATTGCCAAGGCTTGTGGGGCAGTTATTGTCAACAGACCCGATGAACTGCAAGAATCTGATATTGGTACTGGGGCTGGATTATTTGAGGTTAAAAAAATTGGAGATGAGTTCTTTACATTCATCGTTGATTGCAAAGATCCCAAGGCATGTACAGTACTCTTAAGAGGTCCGAGTAAGGATATGTTAAACGAAGTGGAAAGAAATTTACAGGATGCCATGGCAGTAGCAAGAAATATCCTGAAGAATCCAAAACTTGTTCCTGGTGGTGGTGCTGCAGAGTTAACCGTTTCTGCTACACTGAAGCAAAAGAGCTCATCTATTGAAGGTATAGAAAAGTGGCCATATGAAGCTGCTGCAGTAGCTTTTGAGGTTATACCACGAACATTGGCTCAGAACTGTGGGGTTAATGTCATTAGAACGATGACAGCGCTGCAACGAAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005975 GO:0006457 GO:0006458 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0032502 GO:0032535 GO:0032989 GO:0032991 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043412 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051716 GO:0055082 GO:0060560 GO:0061077 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0101031 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

307

Amino Acids

34.11

Weight (kDa)

8.71

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	39 - 150	4.5e-16	TCP-1/cpn60 chaperonin family
Cpn60_TCP1	PF00118	148 - 305	3.5e-48	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26360
fragaria_vesca	FvH4_3g15890 FvH4_3g15890
malus_domestica	MD05G1219100.v1.1 MD10G1201400.v1.1
prunus_persica	Prupe.2G068500_v2.0.a1 Prupe.2G068500_v2.0.a1 Prupe.4G141000_v2.0.a1 Prupe.6G064200_v2.0.a1
pyrus_communis	pycom05g20030 pycom10g17240
rosa_chinensis	RchiOBHm_Chr5g0026711
rosa_laevigata	RLG00000032949
rosa_multiflora	Rmu_sc0027336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052760
rosa_rugosa	Rorug05G0095000
rosa_samantha	Rh4CG005800 Rh5BG185000 Rh5CG204800 Rh5DG187200 Rh5DG243000
rosa_wichuraiana	Rw1G016630 Rw5G017080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	307
AciI	CCGC	2 cut(s)	305, 307
AclWI	GGATC	2 cut(s)	317, 608
AcoI	YGGCCR	3 cut(s)	154, 214, 815
AcsI	RAATTY	1 cut(s)	679
AcuI	CTGAAG	3 cut(s)	422, 737, 797
AfaI	GTAC	4 cut(s)	188, 544, 628, 633
AfeI	AGCGCT	1 cut(s)	906
AfiI	CCNNNNNNNGG	2 cut(s)	157, 743
AflII	CTTAAG	1 cut(s)	637
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	800
AjnI	CCWGG	4 cut(s)	156, 208, 274, 736
AjuI	GAANNNNNNNTTGG	2 cut(s)	522, 554
AluBI	AGCT	3 cut(s)	789, 827, 839
AluI	AGCT	3 cut(s)	789, 827, 839
Alw21I	GWGCWC	1 cut(s)	791
AlwI	GGATC	2 cut(s)	317, 608
Aor51HI	AGCGCT	1 cut(s)	906
AoxI	GGCC	4 cut(s)	154, 214, 427, 815
ApeKI	GCWGC	4 cut(s)	749, 827, 830, 907
ApoI	RAATTY	1 cut(s)	679
AspLEI	GCGC	1 cut(s)	907
AspS9I	GGNCC	3 cut(s)	148, 427, 644
AsuHPI	GGTGA	2 cut(s)	25, 58
AvaII	GGWCC	2 cut(s)	148, 644
BalI	TGGCCA	2 cut(s)	216, 817
BanII	GRGCYC	1 cut(s)	791
Bbv12I	GWGCWC	1 cut(s)	791
BbvI	GCAGC	4 cut(s)	736, 814, 817, 894
BccI	CCATC	1 cut(s)	10
BciT130I	CCWGG	4 cut(s)	158, 210, 276, 738
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	2 cut(s)	750, 831
BfoI	RGCGCY	1 cut(s)	908
BfrI	CTTAAG	1 cut(s)	637
BisI	GCNGC	4 cut(s)	750, 828, 831, 908
BlsI	GCNGC	4 cut(s)	751, 829, 832, 909
BmcAI	AGTACT	1 cut(s)	633
Bme1390I	CCNGG	4 cut(s)	158, 210, 276, 738
Bme18I	GGWCC	2 cut(s)	148, 644
BmgT120I	GGNCC	3 cut(s)	148, 427, 644
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	4 cut(s)	158, 210, 276, 738
BmrI	ACTGGG	1 cut(s)	555
BmsI	GCATC	2 cut(s)	115, 679
BmuI	ACTGGG	1 cut(s)	555
BplI	GAGNNNNNCTC	2 cut(s)	135, 167
BpuEI	CTTGAG	1 cut(s)	353
BsaJI	CCNNGG	7 cut(s)	108, 151, 157, 305, 483, 618, 693
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 743
Bse1I	ACTGG	2 cut(s)	217, 550
Bse3DI	GCAATG	1 cut(s)	267
BseBI	CCWGG	4 cut(s)	158, 210, 276, 738
BseDI	CCNNGG	7 cut(s)	108, 151, 157, 305, 483, 618, 693
BseGI	GGATG	2 cut(s)	90, 694
BseLI	CCNNNNNNNGG	2 cut(s)	157, 743
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	2 cut(s)	357, 881
BseNI	ACTGG	2 cut(s)	217, 550
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	4 cut(s)	736, 814, 817, 894
BsgI	GTGCAG	1 cut(s)	458
Bsh1236I	CGCG	1 cut(s)	307
BshFI	GGCC	4 cut(s)	156, 216, 429, 817
BsiHKAI	GWGCWC	1 cut(s)	791
BslFI	GGGAC	1 cut(s)	405
BslI	CCNNNNNNNGG	2 cut(s)	157, 743
BsmFI	GGGAC	1 cut(s)	405
BsnI	GGCC	4 cut(s)	156, 216, 429, 817
Bsp1286I	GDGCHC	1 cut(s)	791
Bsp1407I	TGTACA	1 cut(s)	626
Bsp143I	GATC	2 cut(s)	309, 613
Bsp19I	CCATGG	1 cut(s)	693
BspACI	CCGC	2 cut(s)	305, 307
BspANI	GGCC	4 cut(s)	156, 216, 429, 817
BspCNI	CTCAG	2 cut(s)	358, 880
BspFNI	CGCG	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	207
BspMAI	CTGCAG	2 cut(s)	754, 835
BspPI	GGATC	2 cut(s)	317, 608
BspTI	CTTAAG	1 cut(s)	637
BsrDI	GCAATG	1 cut(s)	267
BsrGI	TGTACA	1 cut(s)	626
BsrI	ACTGG	2 cut(s)	217, 550
BssECI	CCNNGG	7 cut(s)	108, 151, 157, 305, 483, 618, 693
BssMI	GATC	2 cut(s)	309, 613
BssT1I	CCWWGG	3 cut(s)	483, 618, 693
Bst2UI	CCWGG	4 cut(s)	158, 210, 276, 738
Bst4CI	ACNGT	4 cut(s)	99, 631, 763, 875
BstAFI	CTTAAG	1 cut(s)	637
BstAUI	TGTACA	1 cut(s)	626
BstDEI	CTNAG	2 cut(s)	366, 867
BstDSI	CCRYGG	2 cut(s)	305, 693
BstENI	CCTNNNNNAGG	1 cut(s)	155
BstF5I	GGATG	2 cut(s)	90, 694
BstFNI	CGCG	1 cut(s)	307
BstH2I	RGCGCY	1 cut(s)	908
BstHHI	GCGC	1 cut(s)	907
BstKTI	GATC	2 cut(s)	312, 616
BstMBI	GATC	2 cut(s)	309, 613
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 313, 494, 836
BstNI	CCWGG	4 cut(s)	158, 210, 276, 738
BstNSI	RCATGY	1 cut(s)	627
BstSCI	CCNGG	4 cut(s)	156, 208, 274, 736
BstSFI	CTRYAG	2 cut(s)	750, 831
BstUI	CGCG	1 cut(s)	307
BstV1I	GCAGC	4 cut(s)	736, 814, 817, 894
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BsuRI	GGCC	4 cut(s)	156, 216, 429, 817
BtgI	CCRYGG	2 cut(s)	305, 693
BtsCI	GGATG	2 cut(s)	90, 694
BtsIMutI	CAGTG	2 cut(s)	237, 773
CfoI	GCGC	1 cut(s)	907
Cfr13I	GGNCC	3 cut(s)	148, 427, 644
Cfr42I	CCGCGG	1 cut(s)	308
Csp6I	GTAC	4 cut(s)	187, 543, 627, 632
CspCI	CAANNNNNGTGG	4 cut(s)	472, 507, 843, 878
CviAII	CATG	3 cut(s)	313, 624, 694
CviQI	GTAC	4 cut(s)	187, 543, 627, 632
DdeI	CTNAG	2 cut(s)	366, 867
DpnI	GATC	2 cut(s)	311, 615
DpnII	GATC	2 cut(s)	309, 613
EaeI	YGGCCR	3 cut(s)	154, 214, 815
Ecl136II	GAGCTC	1 cut(s)	789
Eco130I	CCWWGG	3 cut(s)	483, 618, 693
Eco24I	GRGCYC	1 cut(s)	791
Eco47I	GGWCC	2 cut(s)	148, 644
Eco47III	AGCGCT	1 cut(s)	906
Eco53kI	GAGCTC	1 cut(s)	789
Eco57I	CTGAAG	3 cut(s)	422, 737, 797
EcoICRI	GAGCTC	1 cut(s)	789
EcoNI	CCTNNNNNAGG	1 cut(s)	155
EcoO109I	RGGNCCY	1 cut(s)	427
EcoRII	CCWGG	4 cut(s)	156, 208, 274, 736
EcoT14I	CCWWGG	3 cut(s)	483, 618, 693
EcoT38I	GRGCYC	1 cut(s)	791
ErhI	CCWWGG	3 cut(s)	483, 618, 693
FaeI	CATG	3 cut(s)	316, 627, 697
FaiI	YATR	9 cut(s)	314, 339, 625, 659, 695, 806, 820, 822, 851
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	3 cut(s)	312, 623, 693
FauNDI	CATATG	1 cut(s)	820
Fnu4HI	GCNGC	4 cut(s)	750, 828, 831, 908
FokI	GGATG	2 cut(s)	77, 701
FriOI	GRGCYC	1 cut(s)	791
Fsp4HI	GCNGC	4 cut(s)	750, 828, 831, 908
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	906
GluI	GCNGC	4 cut(s)	750, 828, 831, 908
HaeII	RGCGCY	1 cut(s)	908
HaeIII	GGCC	4 cut(s)	156, 216, 429, 817
HhaI	GCGC	1 cut(s)	907
Hin1II	CATG	3 cut(s)	316, 627, 697
Hin6I	GCGC	1 cut(s)	905
HinP1I	GCGC	1 cut(s)	905
HincII	GTYRAC	2 cut(s)	508, 759
HindII	GTYRAC	2 cut(s)	508, 759
HinfI	GANTC	4 cut(s)	227, 393, 530, 721
HpaI	GTTAAC	1 cut(s)	759
HphI	GGTGA	2 cut(s)	25, 58
Hpy166II	GTNNAC	5 cut(s)	148, 164, 352, 508, 759
Hpy188I	TCNGA	4 cut(s)	240, 535, 648, 870
Hpy188III	TCNNGA	4 cut(s)	320, 332, 400, 715
Hpy8I	GTNNAC	5 cut(s)	148, 164, 352, 508, 759
HpyAV	CCTTC	2 cut(s)	196, 794
HpyCH4III	ACNGT	4 cut(s)	99, 631, 763, 875
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	6 cut(s)	439, 526, 609, 752, 833, 910
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 313, 494, 836
HpyF3I	CTNAG	2 cut(s)	366, 867
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	3 cut(s)	316, 627, 697
HspAI	GCGC	1 cut(s)	905
KspAI	GTTAAC	1 cut(s)	759
KspI	CCGCGG	1 cut(s)	308
Kzo9I	GATC	2 cut(s)	309, 613
LmnI	GCTCC	1 cut(s)	277
Lsp1109I	GCAGC	4 cut(s)	736, 814, 817, 894
LweI	GCATC	2 cut(s)	115, 679
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	2 cut(s)	311, 615
MboI	GATC	2 cut(s)	309, 613
MboII	GAAGA	7 cut(s)	16, 236, 300, 395, 422, 425, 730
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	1 cut(s)	791
MlsI	TGGCCA	2 cut(s)	216, 817
MluCI	AATT	3 cut(s)	477, 573, 679
MluNI	TGGCCA	2 cut(s)	216, 817
MlyI	GAGTC	1 cut(s)	387
MmeI	TCCRAC	2 cut(s)	121, 201
Mox20I	TGGCCA	2 cut(s)	216, 817
MscI	TGGCCA	2 cut(s)	216, 817
MseI	TTAA	9 cut(s)	180, 255, 375, 446, 567, 638, 662, 758, 882
Msp20I	TGGCCA	2 cut(s)	216, 817
MspA1I	CMGCKG	1 cut(s)	307
MspCI	CTTAAG	1 cut(s)	637
MspR9I	CCNGG	4 cut(s)	158, 210, 276, 738
MvaI	CCWGG	4 cut(s)	158, 210, 276, 738
MvnI	CGCG	1 cut(s)	307
MwoI	GCNNNNNNNGC	4 cut(s)	125, 313, 494, 836
NcoI	CCATGG	1 cut(s)	693
NdeI	CATATG	1 cut(s)	820
NdeII	GATC	2 cut(s)	309, 613
NlaIII	CATG	3 cut(s)	316, 627, 697
NlaIV	GGNNCC	1 cut(s)	207
NmeAIII	GCCGAG	2 cut(s)	132, 133
NspI	RCATGY	1 cut(s)	627
PfeI	GAWTC	3 cut(s)	227, 530, 721
PfoI	TCCNGGA	1 cut(s)	274
PkrI	GCNGC	4 cut(s)	751, 829, 832, 909
PleI	GAGTC	1 cut(s)	387
PpsI	GAGTC	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	791
Psp6I	CCWGG	4 cut(s)	156, 208, 274, 736
PspGI	CCWGG	4 cut(s)	156, 208, 274, 736
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	3 cut(s)	148, 427, 644
PstI	CTGCAG	2 cut(s)	754, 835
PsuI	RGATCY	1 cut(s)	613
RsaI	GTAC	4 cut(s)	188, 544, 628, 633
RsaNI	GTAC	4 cut(s)	187, 543, 627, 632
SacI	GAGCTC	1 cut(s)	791
SacII	CCGCGG	1 cut(s)	308
SaqAI	TTAA	9 cut(s)	180, 255, 375, 446, 567, 638, 662, 758, 882
SatI	GCNGC	4 cut(s)	750, 828, 831, 908
Sau3AI	GATC	2 cut(s)	309, 613
Sau96I	GGNCC	3 cut(s)	148, 427, 644
ScaI	AGTACT	1 cut(s)	633
SchI	GAGTC	1 cut(s)	387
ScrFI	CCNGG	4 cut(s)	158, 210, 276, 738
SduI	GDGCHC	1 cut(s)	791
SfaNI	GCATC	2 cut(s)	115, 679
SfcI	CTRYAG	2 cut(s)	750, 831
Sfr303I	CCGCGG	1 cut(s)	308
SgrBI	CCGCGG	1 cut(s)	308
SinI	GGWCC	2 cut(s)	148, 644
SmlI	CTYRAG	2 cut(s)	332, 637
SmoI	CTYRAG	2 cut(s)	332, 637
Sse9I	AATT	3 cut(s)	477, 573, 679
SsiI	CCGC	2 cut(s)	305, 307
SspMI	CTAG	1 cut(s)	132
SstI	GAGCTC	1 cut(s)	791
StyD4I	CCNGG	4 cut(s)	156, 208, 274, 736
StyI	CCWWGG	3 cut(s)	483, 618, 693
TaaI	ACNGT	4 cut(s)	99, 631, 763, 875
TaiI	ACGT	1 cut(s)	62
TasI	AATT	3 cut(s)	477, 573, 679
TatI	WGTACW	3 cut(s)	186, 626, 631
TfiI	GAWTC	3 cut(s)	227, 530, 721
Tru1I	TTAA	9 cut(s)	180, 255, 375, 446, 567, 638, 662, 758, 882
Tru9I	TTAA	9 cut(s)	180, 255, 375, 446, 567, 638, 662, 758, 882
TscAI	CASTG	2 cut(s)	237, 780
TseI	GCWGC	4 cut(s)	749, 827, 830, 907
TspDTI	ATGAA	5 cut(s)	17, 79, 534, 586, 837
TspRI	CASTG	2 cut(s)	237, 780
Vha464I	CTTAAG	1 cut(s)	637
VpaK11BI	GGWCC	2 cut(s)	148, 644
XagI	CCTNNNNNAGG	1 cut(s)	155
XapI	RAATTY	1 cut(s)	679
XceI	RCATGY	1 cut(s)	627
XspI	CTAG	1 cut(s)	132
ZrmI	AGTACT	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.