Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008625

Physical Location & Seq

Genomic Coordinates Forward (+)

9775291 .. 9776753

Gene Structure 1463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G068500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGATATTCAAAAGTACATAAAGGTTGAGAAGGTCCCTGGTGGCCAGTTGGAAGATTCAGTGGTTCGCAAAGGAGTAATGAATAACAAAGATGTTATTGCACCTGGAAAAATGAGAAGAAAGATTTTCAACCAACGCATCATTCTTCTTGATTGGCCGCTCGAATATAAGAAAGGCGAGAACCAAACAAATGCTGAGTTGCTTAAAGAAGAAGATTGGGGAGTCCTGCTACAATTGGAAGAAGAATACATCGAGAGGCTATGTGTGCAAATATTGAAGTTTAAACCAGATGTGGTTATCACAGAAAAGGGGCTTAGTGACTTGGCATGCCATTATTTTAGCAAGGCCGGCGTCAGTGGAATGAGGAGGTTGCGGAAAACAGATAATAACCGAATTGCCAAGGCTTGTGGGGCTGTAATTGTTAACAGACCAGATGAATTGCAACAGTCTGATGTTGGTACACGCGCTGGGATATTTGAGGTTAAGAAAATTGGTGATGAGTTTTTTGCATTCATTGTTGATTGCAAAGAGCCTAAAGCATGTACTATACTCTTGAGAGGTCCTAGTAAGGATCTGTTAAATGAAGTGGAAAGGAATTTGTACGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005975 GO:0006457 GO:0006458 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0032502 GO:0032535 GO:0032989 GO:0032991 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043412 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051716 GO:0055082 GO:0060560 GO:0061077 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0101031 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

203

Amino Acids

23.08

Weight (kDa)

8.51

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26360
fragaria_vesca	FvH4_3g15890 FvH4_3g15890
malus_domestica	MD05G1219100.v1.1 MD10G1201400.v1.1
prunus_persica	Prupe.2G068500_v2.0.a1 Prupe.2G068500_v2.0.a1 Prupe.4G141000_v2.0.a1 Prupe.6G064200_v2.0.a1
pyrus_communis	pycom05g20030 pycom10g17240
rosa_chinensis	RchiOBHm_Chr5g0026711
rosa_laevigata	RLG00000032949
rosa_multiflora	Rmu_sc0027336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052760
rosa_rugosa	Rorug05G0095000
rosa_samantha	Rh4CG005800 Rh5BG185000 Rh5CG204800 Rh5DG187200 Rh5DG243000
rosa_wichuraiana	Rw1G016630 Rw5G017080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	160
AccII	CGCG	1 cut(s)	465
AciI	CCGC	2 cut(s)	158, 373
AclWI	GGATC	1 cut(s)	579
AcoI	YGGCCR	2 cut(s)	43, 155
AcsI	RAATTY	1 cut(s)	595
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	4 cut(s)	17, 460, 544, 602
AgsI	TTSAA	3 cut(s)	11, 130, 277
AjnI	CCWGG	2 cut(s)	37, 103
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
AlwI	GGATC	1 cut(s)	579
AoxI	GGCC	3 cut(s)	43, 155, 345
ApoI	RAATTY	1 cut(s)	595
AspLEI	GCGC	1 cut(s)	467
AspS9I	GGNCC	2 cut(s)	34, 560
AsuHPI	GGTGA	1 cut(s)	506
AvaII	GGWCC	2 cut(s)	34, 560
BalI	TGGCCA	1 cut(s)	45
BciT130I	CCWGG	2 cut(s)	39, 105
BfaI	CTAG	1 cut(s)	564
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
Bme1390I	CCNGG	2 cut(s)	39, 105
Bme18I	GGWCC	2 cut(s)	34, 560
BmgT120I	GGNCC	2 cut(s)	34, 560
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	2 cut(s)	39, 105
BmsI	GCATC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	574
BsaAI	YACGTR	1 cut(s)	604
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	2 cut(s)	37, 399
Bse118I	RCCGGY	1 cut(s)	347
Bse1I	ACTGG	1 cut(s)	46
BseBI	CCWGG	2 cut(s)	39, 105
BseDI	CCNNGG	2 cut(s)	37, 399
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	379
BseYI	CCCAGC	1 cut(s)	467
Bsh1236I	CGCG	1 cut(s)	465
BshFI	GGCC	3 cut(s)	45, 157, 347
BsiSI	CCGG	1 cut(s)	348
BslFI	GGGAC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	509
BsnI	GGCC	3 cut(s)	45, 157, 347
Bsp143I	GATC	1 cut(s)	571
BspACI	CCGC	2 cut(s)	158, 373
BspANI	GGCC	3 cut(s)	45, 157, 347
BspCNI	CTCAG	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	465
BspLI	GGNNCC	1 cut(s)	36
BspPI	GGATC	1 cut(s)	579
BsrBI	CCGCTC	1 cut(s)	160
BsrFI	RCCGGY	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	46
BssAI	RCCGGY	1 cut(s)	347
BssECI	CCNNGG	2 cut(s)	37, 399
BssMI	GATC	1 cut(s)	571
BssNI	GRCGYC	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	2 cut(s)	39, 105
Bst4CI	ACNGT	1 cut(s)	447
BstACI	GRCGYC	1 cut(s)	351
BstBAI	YACGTR	1 cut(s)	604
BstC8I	GCNNGC	2 cut(s)	328, 349
BstDEI	CTNAG	2 cut(s)	195, 314
BstFNI	CGCG	1 cut(s)	465
BstHHI	GCGC	1 cut(s)	467
BstKTI	GATC	1 cut(s)	574
BstMBI	GATC	1 cut(s)	571
BstMWI	GCNNNNNNNGC	3 cut(s)	265, 348, 410
BstNI	CCWGG	2 cut(s)	39, 105
BstNSI	RCATGY	2 cut(s)	330, 543
BstSCI	CCNGG	2 cut(s)	37, 103
BstSNI	TACGTA	1 cut(s)	604
BstUI	CGCG	1 cut(s)	465
BstX2I	RGATCY	1 cut(s)	571
BstYI	RGATCY	1 cut(s)	571
BsuRI	GGCC	3 cut(s)	45, 157, 347
BtsIMutI	CAGTG	2 cut(s)	66, 361
Cac8I	GCNNGC	2 cut(s)	328, 349
CfoI	GCGC	1 cut(s)	467
Cfr10I	RCCGGY	1 cut(s)	347
Cfr13I	GGNCC	2 cut(s)	34, 560
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	4 cut(s)	16, 459, 543, 601
CspCI	CAANNNNNGTGG	2 cut(s)	388, 423
CviAII	CATG	2 cut(s)	327, 540
CviJI	RGCY	8 cut(s)	45, 157, 259, 313, 347, 404, 413, 532
CviKI_1	RGCY	8 cut(s)	45, 157, 259, 313, 347, 404, 413, 532
CviQI	GTAC	4 cut(s)	16, 459, 543, 601
DdeI	CTNAG	2 cut(s)	195, 314
DpnI	GATC	1 cut(s)	573
DpnII	GATC	1 cut(s)	571
DraI	TTTAAA	1 cut(s)	283
EaeI	YGGCCR	2 cut(s)	43, 155
Eco105I	TACGTA	1 cut(s)	604
Eco130I	CCWWGG	1 cut(s)	399
Eco47I	GGWCC	2 cut(s)	34, 560
EcoO109I	RGGNCCY	2 cut(s)	34, 560
EcoRII	CCWGG	2 cut(s)	37, 103
EcoT14I	CCWWGG	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	2 cut(s)	330, 543
FaiI	YATR	7 cut(s)	20, 168, 262, 328, 541, 548, 607
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	2 cut(s)	326, 539
Fnu4HI	GCNGC	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	158
FspBI	CTAG	1 cut(s)	564
GlaI	GCGC	1 cut(s)	466
GluI	GCNGC	1 cut(s)	158
GsaI	CCCAGC	1 cut(s)	471
HaeIII	GGCC	3 cut(s)	45, 157, 347
HapII	CCGG	1 cut(s)	348
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	1 cut(s)	467
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	2 cut(s)	330, 543
Hin6I	GCGC	1 cut(s)	465
HinP1I	GCGC	1 cut(s)	465
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	2 cut(s)	56, 222
HpaI	GTTAAC	1 cut(s)	424
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	1 cut(s)	506
Hpy166II	GTNNAC	2 cut(s)	424, 461
Hpy188I	TCNGA	1 cut(s)	451
Hpy188III	TCNNGA	3 cut(s)	149, 253, 553
Hpy8I	GTNNAC	2 cut(s)	424, 461
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	447
HpyCH4IV	ACGT	1 cut(s)	603
HpyCH4V	TGCA	5 cut(s)	101, 268, 442, 509, 525
HpyF10VI	GCNNNNNNNGC	3 cut(s)	265, 348, 410
HpyF3I	CTNAG	2 cut(s)	195, 314
HpySE526I	ACGT	1 cut(s)	603
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	330, 543
HspAI	GCGC	1 cut(s)	465
KroI	GCCGGC	1 cut(s)	347
KroNI	GCCGGC	1 cut(s)	349
KspAI	GTTAAC	1 cut(s)	424
Kzo9I	GATC	1 cut(s)	571
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	1 cut(s)	564
MaeII	ACGT	1 cut(s)	603
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	1 cut(s)	573
MbiI	CCGCTC	1 cut(s)	160
MboI	GATC	1 cut(s)	571
MboII	GAAGA	7 cut(s)	65, 129, 137, 221, 224, 251, 254
MfeI	CAATTG	1 cut(s)	233
MflI	RGATCY	1 cut(s)	571
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	6 cut(s)	233, 393, 417, 437, 489, 595
MluNI	TGGCCA	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	231
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	5 cut(s)	249, 357, 360, 472, 551
Mox20I	TGGCCA	1 cut(s)	45
MroNI	GCCGGC	1 cut(s)	347
MscI	TGGCCA	1 cut(s)	45
MseI	TTAA	5 cut(s)	204, 282, 423, 483, 578
Msp20I	TGGCCA	1 cut(s)	45
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	2 cut(s)	39, 105
MssI	GTTTAAAC	1 cut(s)	283
MunI	CAATTG	1 cut(s)	233
Mva1269I	GAATGC	1 cut(s)	509
MvaI	CCWGG	2 cut(s)	39, 105
MvnI	CGCG	1 cut(s)	465
MwoI	GCNNNNNNNGC	3 cut(s)	265, 348, 410
NaeI	GCCGGC	1 cut(s)	349
NdeII	GATC	1 cut(s)	571
NgoMIV	GCCGGC	1 cut(s)	347
NlaIII	CATG	2 cut(s)	330, 543
NlaIV	GGNNCC	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	317
NspI	RCATGY	2 cut(s)	330, 543
PaeI	GCATGC	1 cut(s)	330
PctI	GAATGC	1 cut(s)	509
PdiI	GCCGGC	1 cut(s)	349
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	1 cut(s)	159
PleI	GAGTC	1 cut(s)	230
PmeI	GTTTAAAC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	230
Ppu21I	YACGTR	1 cut(s)	604
PpuMI	RGGWCCY	2 cut(s)	34, 560
Psp5II	RGGWCCY	2 cut(s)	34, 560
Psp6I	CCWGG	2 cut(s)	37, 103
PspFI	CCCAGC	1 cut(s)	467
PspGI	CCWGG	2 cut(s)	37, 103
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	2 cut(s)	34, 560
PspPPI	RGGWCCY	2 cut(s)	34, 560
PsuI	RGATCY	1 cut(s)	571
RsaI	GTAC	4 cut(s)	17, 460, 544, 602
RsaNI	GTAC	4 cut(s)	16, 459, 543, 601
SaqAI	TTAA	5 cut(s)	204, 282, 423, 483, 578
SatI	GCNGC	1 cut(s)	158
Sau3AI	GATC	1 cut(s)	571
Sau96I	GGNCC	2 cut(s)	34, 560
SchI	GAGTC	1 cut(s)	231
ScrFI	CCNGG	2 cut(s)	39, 105
SetI	ASST	7 cut(s)	27, 36, 106, 371, 483, 562, 606
SfaNI	GCATC	1 cut(s)	147
SinI	GGWCC	2 cut(s)	34, 560
SmlI	CTYRAG	1 cut(s)	553
SmoI	CTYRAG	1 cut(s)	553
SnaBI	TACGTA	1 cut(s)	604
SphI	GCATGC	1 cut(s)	330
Sse9I	AATT	6 cut(s)	233, 393, 417, 437, 489, 595
SsiI	CCGC	2 cut(s)	158, 373
SspI	AATATT	1 cut(s)	273
SspMI	CTAG	1 cut(s)	564
StyD4I	CCNGG	2 cut(s)	37, 103
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	1 cut(s)	447
TaiI	ACGT	1 cut(s)	606
TaqI	TCGA	2 cut(s)	162, 252
TasI	AATT	6 cut(s)	233, 393, 417, 437, 489, 595
TatI	WGTACW	2 cut(s)	15, 542
TauI	GCSGC	1 cut(s)	160
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	5 cut(s)	204, 282, 423, 483, 578
Tru9I	TTAA	5 cut(s)	204, 282, 423, 483, 578
TscAI	CASTG	2 cut(s)	66, 361
TseFI	GTSAC	1 cut(s)	317
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	4 cut(s)	95, 450, 502, 597
TspRI	CASTG	2 cut(s)	66, 361
VpaK11BI	GGWCC	2 cut(s)	34, 560
XapI	RAATTY	1 cut(s)	595
XceI	RCATGY	2 cut(s)	330, 543
XspI	CTAG	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.