Rw1G016630
TCP Family

T-complex protein 1 subunit

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
36883275 .. 36885302
2028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G016630.1

Sequence Viewer

Length: 1143 bp
ATGTGCTGCATGTGTAGTACTAATATATTATATATATATATATATATAAATCTTTTTGATTTAGCCCTTGATGCCACTAGAATAGTTGGAGTGGACCTCGGCCAGGGTTTACGAGAAGTGGATATTAAAAAGTACATCAAGGTTGAGAAGGTTCCTGGTGGCCAGTTGGAAGATTCAGTGGTTCTGAAAGGAGTAATGATTAACAAAGATGTCATTGCTCCTGGAAAAATGAGAAGAAAGATTGTCAATCCGCGGATCATGCTTCTTGATTGTCCTCTTGAGTATAAGAAAGGCGAGAACCAAACAAATGCTGAGTTGCTTAAAGAGGAAGATTGGGGACTCCTCCTGAAGTTAGAAGAAGAATACATTGACGGCCTCTGTGTGCAGATATTGAAGTTCAAACCAGATGTTGTGATATCAGAAAAGGGGCTCAGTGACCTGGCATGCCATTATCTGAGCAAGGCCGGTGTTACTGCAATTAGGAGGTTGAGAAAAACAGATAATAACAGAATTGCCAAGGCTTGTGGGGTAGTTATTGTCAACAGACCCGATGAACTGCAAGAATCTGATATTGGTACTGGGGCTGGATTATTTGAGGTTAAAAAAATTGGAGATGAGTTCTTTACATTCATCGTTGATTGCAAAGATCCCAAGGCATGTACAGTACTCTTAAGAGGTCCGAGTAAGGATATGTTAAACGAAGTGGAAAGAAATTTACAGGATGCCATGGCAGTAGCAAGAAATATCCTGAAGAATCCAAAACTTGTTCCTGGTGGTGGTGCTGCAGAGTTAACTGTTTATGCTACACTGAAGCAAAAGAGCTCATCTATTGAAGGTATAGAAAAGTGGCCATATGAAGCTGCTGCTATAGCTTTTGAGGCTATACCACGAACATTGGCTCAGAACTGTGGGGTTAATGTCATTAGAACGATGACAGCGCTGCAAGGAAAGCACGCAAATGGTGAAAATGCATGCAAATTGTTGTCAGTACGTCCCAAGCTTGCTTCCATGTGCTTGTTGCTAACTAGATTTGTAAGTACAGAATGGGTACAAAAAAAGGAGAAATCATGCCTTCTGGTATGTATATGTATGTATATGCACACACACACACACACACATATAATGACTGTTTTTTGGGTTTAG

Protein Analysis

380

Amino Acids

42.4

Weight (kDa)

8.51

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 19 - 323 7e-83 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 253
AciI CCGC 2 cut(s) 251, 253
AclWI GGATC 2 cut(s) 263, 641
AcoI YGGCCR 3 cut(s) 100, 160, 848
AcsI RAATTY 1 cut(s) 712
AcuI CTGAAG 3 cut(s) 368, 770, 830
AfaI GTAC 8 cut(s) 19, 134, 577, 661, 666, 990, 1039, 1050
AfeI AGCGCT 1 cut(s) 939
AfiI CCNNNNNNNGG 2 cut(s) 103, 776
AflII CTTAAG 1 cut(s) 670
AgsI TTSAA 3 cut(s) 394, 400, 833
AjnI CCWGG 5 cut(s) 102, 154, 220, 438, 769
AjuI GAANNNNNNNTTGG 2 cut(s) 555, 587
AluBI AGCT 4 cut(s) 822, 860, 872, 1000
AluI AGCT 4 cut(s) 822, 860, 872, 1000
Alw21I GWGCWC 1 cut(s) 824
AlwI GGATC 2 cut(s) 263, 641
Aor51HI AGCGCT 1 cut(s) 939
AoxI GGCC 5 cut(s) 100, 160, 373, 462, 848
ApeKI GCWGC 5 cut(s) 6, 782, 860, 863, 940
ApoI RAATTY 1 cut(s) 712
AspLEI GCGC 1 cut(s) 940
AspS9I GGNCC 2 cut(s) 94, 677
AsuHPI GGTGA 1 cut(s) 974
AvaII GGWCC 2 cut(s) 94, 677
BalI TGGCCA 2 cut(s) 162, 850
BanII GRGCYC 2 cut(s) 432, 824
Bbv12I GWGCWC 1 cut(s) 824
BbvI GCAGC 4 cut(s) 769, 847, 850, 927
BceAI ACGGC 1 cut(s) 388
BciT130I CCWGG 5 cut(s) 104, 156, 222, 440, 771
BfaI CTAG 2 cut(s) 78, 1026
BfmI CTRYAG 2 cut(s) 783, 867
BfoI RGCGCY 1 cut(s) 941
BfrI CTTAAG 1 cut(s) 670
BisI GCNGC 5 cut(s) 7, 783, 861, 864, 941
BlsI GCNGC 5 cut(s) 8, 784, 862, 865, 942
BmcAI AGTACT 2 cut(s) 19, 666
Bme1390I CCNGG 5 cut(s) 104, 156, 222, 440, 771
Bme18I GGWCC 2 cut(s) 94, 677
BmgT120I GGNCC 2 cut(s) 94, 677
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 5 cut(s) 104, 156, 222, 440, 771
BmrI ACTGGG 1 cut(s) 588
BmsI GCATC 2 cut(s) 61, 712
BmuI ACTGGG 1 cut(s) 588
BplI GAGNNNNNCTC 2 cut(s) 81, 113
BpuEI CTTGAG 1 cut(s) 299
BsaJI CCNNGG 6 cut(s) 97, 103, 251, 516, 651, 726
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 776
Bse118I RCCGGY 1 cut(s) 464
Bse1I ACTGG 2 cut(s) 163, 583
Bse3DI GCAATG 1 cut(s) 213
BseBI CCWGG 5 cut(s) 104, 156, 222, 440, 771
BseDI CCNNGG 6 cut(s) 97, 103, 251, 516, 651, 726
BseGI GGATG 1 cut(s) 727
BseLI CCNNNNNNNGG 2 cut(s) 103, 776
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 4 cut(s) 303, 445, 446, 914
BseNI ACTGG 2 cut(s) 163, 583
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 4 cut(s) 769, 847, 850, 927
BsgI GTGCAG 1 cut(s) 404
Bsh1236I CGCG 1 cut(s) 253
BshFI GGCC 5 cut(s) 102, 162, 375, 464, 850
BsiHKAI GWGCWC 1 cut(s) 824
BsiSI CCGG 1 cut(s) 465
BslFI GGGAC 2 cut(s) 351, 978
BslI CCNNNNNNNGG 2 cut(s) 103, 776
BsmFI GGGAC 2 cut(s) 351, 978
BsnI GGCC 5 cut(s) 102, 162, 375, 464, 850
Bsp1286I GDGCHC 2 cut(s) 432, 824
Bsp1407I TGTACA 1 cut(s) 659
Bsp143I GATC 2 cut(s) 255, 646
Bsp19I CCATGG 1 cut(s) 726
BspACI CCGC 2 cut(s) 251, 253
BspANI GGCC 5 cut(s) 102, 162, 375, 464, 850
BspCNI CTCAG 4 cut(s) 304, 444, 447, 913
BspFNI CGCG 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 153
BspMAI CTGCAG 1 cut(s) 787
BspPI GGATC 2 cut(s) 263, 641
BspTI CTTAAG 1 cut(s) 670
BsrDI GCAATG 1 cut(s) 213
BsrFI RCCGGY 1 cut(s) 464
BsrGI TGTACA 1 cut(s) 659
BsrI ACTGG 2 cut(s) 163, 583
BssAI RCCGGY 1 cut(s) 464
BssECI CCNNGG 6 cut(s) 97, 103, 251, 516, 651, 726
BssMI GATC 2 cut(s) 255, 646
BssT1I CCWWGG 3 cut(s) 516, 651, 726
Bst2UI CCWGG 5 cut(s) 104, 156, 222, 440, 771
Bst4CI ACNGT 4 cut(s) 664, 796, 908, 1129
BstAFI CTTAAG 1 cut(s) 670
BstAUI TGTACA 1 cut(s) 659
BstC8I GCNNGC 4 cut(s) 445, 954, 973, 1002
BstDEI CTNAG 4 cut(s) 312, 431, 455, 900
BstDSI CCRYGG 2 cut(s) 251, 726
BstENI CCTNNNNNAGG 1 cut(s) 101
BstF5I GGATG 1 cut(s) 727
BstFNI CGCG 1 cut(s) 253
BstH2I RGCGCY 1 cut(s) 941
BstHHI GCGC 1 cut(s) 940
BstKTI GATC 2 cut(s) 258, 649
BstMBI GATC 2 cut(s) 255, 646
BstMWI GCNNNNNNNGC 5 cut(s) 71, 259, 869, 878, 949
BstNI CCWGG 5 cut(s) 104, 156, 222, 440, 771
BstNSI RCATGY 4 cut(s) 13, 447, 660, 975
BstSCI CCNGG 5 cut(s) 102, 154, 220, 438, 769
BstSFI CTRYAG 2 cut(s) 783, 867
BstUI CGCG 1 cut(s) 253
BstV1I GCAGC 4 cut(s) 769, 847, 850, 927
BstX2I RGATCY 1 cut(s) 646
BstYI RGATCY 1 cut(s) 646
BsuRI GGCC 5 cut(s) 102, 162, 375, 464, 850
BtgI CCRYGG 2 cut(s) 251, 726
BtsCI GGATG 1 cut(s) 727
BtsIMutI CAGTG 3 cut(s) 183, 439, 806
Cac8I GCNNGC 4 cut(s) 445, 954, 973, 1002
CfoI GCGC 1 cut(s) 940
Cfr10I RCCGGY 1 cut(s) 464
Cfr13I GGNCC 2 cut(s) 94, 677
Cfr42I CCGCGG 1 cut(s) 254
Csp6I GTAC 8 cut(s) 18, 133, 576, 660, 665, 989, 1038, 1049
CspCI CAANNNNNGTGG 4 cut(s) 505, 540, 876, 911
CviAII CATG 8 cut(s) 10, 259, 444, 657, 727, 972, 1009, 1068
CviQI GTAC 8 cut(s) 18, 133, 576, 660, 665, 989, 1038, 1049
DdeI CTNAG 4 cut(s) 312, 431, 455, 900
DpnI GATC 2 cut(s) 257, 648
DpnII GATC 2 cut(s) 255, 646
EaeI YGGCCR 3 cut(s) 100, 160, 848
Ecl136II GAGCTC 1 cut(s) 822
Eco130I CCWWGG 3 cut(s) 516, 651, 726
Eco24I GRGCYC 2 cut(s) 432, 824
Eco32I GATATC 1 cut(s) 417
Eco47I GGWCC 2 cut(s) 94, 677
Eco47III AGCGCT 1 cut(s) 939
Eco53kI GAGCTC 1 cut(s) 822
Eco57I CTGAAG 3 cut(s) 368, 770, 830
EcoICRI GAGCTC 1 cut(s) 822
EcoNI CCTNNNNNAGG 1 cut(s) 101
EcoRII CCWGG 5 cut(s) 102, 154, 220, 438, 769
EcoRV GATATC 1 cut(s) 417
EcoT14I CCWWGG 3 cut(s) 516, 651, 726
EcoT22I ATGCAT 1 cut(s) 973
EcoT38I GRGCYC 2 cut(s) 432, 824
ErhI CCWWGG 3 cut(s) 516, 651, 726
FaeI CATG 8 cut(s) 13, 262, 447, 660, 730, 975, 1012, 1071
FaqI GGGAC 2 cut(s) 351, 978
FatI CATG 8 cut(s) 9, 258, 443, 656, 726, 971, 1008, 1067
FauNDI CATATG 1 cut(s) 853
Fnu4HI GCNGC 5 cut(s) 7, 783, 861, 864, 941
FokI GGATG 1 cut(s) 734
FriOI GRGCYC 2 cut(s) 432, 824
Fsp4HI GCNGC 5 cut(s) 7, 783, 861, 864, 941
FspBI CTAG 2 cut(s) 78, 1026
GlaI GCGC 1 cut(s) 939
GluI GCNGC 5 cut(s) 7, 783, 861, 864, 941
HaeII RGCGCY 1 cut(s) 941
HaeIII GGCC 5 cut(s) 102, 162, 375, 464, 850
HapII CCGG 1 cut(s) 465
HhaI GCGC 1 cut(s) 940
Hin1II CATG 8 cut(s) 13, 262, 447, 660, 730, 975, 1012, 1071
Hin6I GCGC 1 cut(s) 938
HinP1I GCGC 1 cut(s) 938
HincII GTYRAC 2 cut(s) 541, 792
HindII GTYRAC 2 cut(s) 541, 792
HindIII AAGCTT 1 cut(s) 998
HinfI GANTC 4 cut(s) 173, 339, 563, 754
HpaI GTTAAC 1 cut(s) 792
HpaII CCGG 1 cut(s) 465
HphI GGTGA 1 cut(s) 974
Hpy166II GTNNAC 4 cut(s) 94, 110, 541, 792
Hpy188I TCNGA 6 cut(s) 186, 421, 456, 568, 681, 903
Hpy188III TCNNGA 4 cut(s) 266, 278, 346, 748
Hpy8I GTNNAC 4 cut(s) 94, 110, 541, 792
HpyAV CCTTC 3 cut(s) 142, 827, 1082
HpyCH4III ACNGT 4 cut(s) 664, 796, 908, 1129
HpyCH4IV ACGT 1 cut(s) 991
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 259, 869, 878, 949
HpyF3I CTNAG 4 cut(s) 312, 431, 455, 900
HpySE526I ACGT 1 cut(s) 991
Hsp92II CATG 8 cut(s) 13, 262, 447, 660, 730, 975, 1012, 1071
HspAI GCGC 1 cut(s) 938
KspAI GTTAAC 1 cut(s) 792
KspI CCGCGG 1 cut(s) 254
Kzo9I GATC 2 cut(s) 255, 646
LmnI GCTCC 1 cut(s) 223
Lsp1109I GCAGC 4 cut(s) 769, 847, 850, 927
LweI GCATC 2 cut(s) 61, 712
MaeI CTAG 2 cut(s) 78, 1026
MaeII ACGT 1 cut(s) 991
MaeIII GTNAC 2 cut(s) 434, 469
MalI GATC 2 cut(s) 257, 648
MboI GATC 2 cut(s) 255, 646
MboII GAAGA 6 cut(s) 182, 246, 341, 368, 371, 763
MflI RGATCY 1 cut(s) 646
MhlI GDGCHC 2 cut(s) 432, 824
MlsI TGGCCA 2 cut(s) 162, 850
MluCI AATT 5 cut(s) 477, 510, 606, 712, 977
MluNI TGGCCA 2 cut(s) 162, 850
MlyI GAGTC 1 cut(s) 333
MmeI TCCRAC 2 cut(s) 67, 147
MnlI CCTC 9 cut(s) 107, 285, 319, 353, 386, 477, 589, 668, 871
Mox20I TGGCCA 2 cut(s) 162, 850
Mph1103I ATGCAT 1 cut(s) 973
MscI TGGCCA 2 cut(s) 162, 850
MseI TTAA 8 cut(s) 126, 201, 321, 600, 671, 695, 791, 915
MslI CAYNNNNRTG 1 cut(s) 957
Msp20I TGGCCA 2 cut(s) 162, 850
MspA1I CMGCKG 1 cut(s) 253
MspCI CTTAAG 1 cut(s) 670
MspI CCGG 1 cut(s) 465
MspR9I CCNGG 5 cut(s) 104, 156, 222, 440, 771
MvaI CCWGG 5 cut(s) 104, 156, 222, 440, 771
MvnI CGCG 1 cut(s) 253
MwoI GCNNNNNNNGC 5 cut(s) 71, 259, 869, 878, 949
NcoI CCATGG 1 cut(s) 726
NdeI CATATG 1 cut(s) 853
NdeII GATC 2 cut(s) 255, 646
NlaIII CATG 8 cut(s) 13, 262, 447, 660, 730, 975, 1012, 1071
NlaIV GGNNCC 1 cut(s) 153
NmeAIII GCCGAG 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 434
NsiI ATGCAT 1 cut(s) 973
NspI RCATGY 4 cut(s) 13, 447, 660, 975
PaeI GCATGC 2 cut(s) 447, 975
PfeI GAWTC 3 cut(s) 173, 563, 754
PfoI TCCNGGA 1 cut(s) 220
PkrI GCNGC 5 cut(s) 8, 784, 862, 865, 942
PleI GAGTC 1 cut(s) 333
PpsI GAGTC 1 cut(s) 333
Psp124BI GAGCTC 1 cut(s) 824
Psp6I CCWGG 5 cut(s) 102, 154, 220, 438, 769
PspGI CCWGG 5 cut(s) 102, 154, 220, 438, 769
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 2 cut(s) 94, 677
PstI CTGCAG 1 cut(s) 787
PsuI RGATCY 1 cut(s) 646
RsaI GTAC 8 cut(s) 19, 134, 577, 661, 666, 990, 1039, 1050
RsaNI GTAC 8 cut(s) 18, 133, 576, 660, 665, 989, 1038, 1049
RseI CAYNNNNRTG 1 cut(s) 957
SacI GAGCTC 1 cut(s) 824
SacII CCGCGG 1 cut(s) 254
SaqAI TTAA 8 cut(s) 126, 201, 321, 600, 671, 695, 791, 915
SatI GCNGC 5 cut(s) 7, 783, 861, 864, 941
Sau3AI GATC 2 cut(s) 255, 646
Sau96I GGNCC 2 cut(s) 94, 677
ScaI AGTACT 2 cut(s) 19, 666
SchI GAGTC 1 cut(s) 333
ScrFI CCNGG 5 cut(s) 104, 156, 222, 440, 771
SduI GDGCHC 2 cut(s) 432, 824
SfaNI GCATC 2 cut(s) 61, 712
SfcI CTRYAG 2 cut(s) 783, 867
Sfr303I CCGCGG 1 cut(s) 254
SgrBI CCGCGG 1 cut(s) 254
SinI GGWCC 2 cut(s) 94, 677
SmiMI CAYNNNNRTG 1 cut(s) 957
SmlI CTYRAG 2 cut(s) 278, 670
SmoI CTYRAG 2 cut(s) 278, 670
SphI GCATGC 2 cut(s) 447, 975
Sse9I AATT 5 cut(s) 477, 510, 606, 712, 977
SsiI CCGC 2 cut(s) 251, 253
SspMI CTAG 2 cut(s) 78, 1026
SstI GAGCTC 1 cut(s) 824
StyD4I CCNGG 5 cut(s) 102, 154, 220, 438, 769
StyI CCWWGG 3 cut(s) 516, 651, 726
TaaI ACNGT 4 cut(s) 664, 796, 908, 1129
TaiI ACGT 1 cut(s) 994
TasI AATT 5 cut(s) 477, 510, 606, 712, 977
TatI WGTACW 5 cut(s) 17, 132, 659, 664, 1037
TfiI GAWTC 3 cut(s) 173, 563, 754
Tru1I TTAA 8 cut(s) 126, 201, 321, 600, 671, 695, 791, 915
Tru9I TTAA 8 cut(s) 126, 201, 321, 600, 671, 695, 791, 915
TscAI CASTG 3 cut(s) 183, 439, 813
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 5 cut(s) 6, 782, 860, 863, 940
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 3 cut(s) 567, 619, 870
TspRI CASTG 3 cut(s) 183, 439, 813
Vha464I CTTAAG 1 cut(s) 670
VpaK11BI GGWCC 2 cut(s) 94, 677
XagI CCTNNNNNAGG 1 cut(s) 101
XapI RAATTY 1 cut(s) 712
XceI RCATGY 4 cut(s) 13, 447, 660, 975
XspI CTAG 2 cut(s) 78, 1026
ZrmI AGTACT 2 cut(s) 19, 666
Zsp2I ATGCAT 1 cut(s) 973
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.