Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011328

Physical Location & Seq

Genomic Coordinates Reverse (-)

9792509 .. 9793560

Gene Structure 1052 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G27670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAGTCATCACAAGCAACGACGAAGCCAACGAGAGGAGCAGGAGGAAGGAAAGGTGGAGATAGGAAGAAGAGTGTTAGTAAATCTGTTAAAGCTGGTCTTCAATTTCCCGTTGGTCGTATCGCTCGTTACTTGAAGAAAGGTCGGTACGCTCTCCGATACGGTTCCGGTGCTCCGGTTTACCTCGCCGCCGTTCTCGAATACCTAGCCGCCGAGGTACTTGAGCTAGCTGGGAACGCAGCGAGAGATAATAAGAAGAACAGGATAAACCCTAGGCATCTATGTTTAGCGATAAGGAACGATGAGGAATTGGGGAGATTGCTTCATGGAGTTACTATTGCTAGTGGTGGTGTTCTTCCAAACATTAATCCAGTTCTTCTTCCTAAGAAATCAACAGCTTCTTCTTCTCAAGCGGAGAAAGCTTCTGCTACCAAATCTCCTAAGAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

150

Amino Acids

15.91

Weight (kDa)

10.47

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	22 - 99	4.4e-14	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	102 - 135	1.6e-17	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27670 AT5G59870
malus_domestica	MD04G1201800.v1.1 MD12G1215400.v1.1 MD12G1215500.v1.1
prunus_persica	Prupe.6G322000_v2.0.a1
pyrus_communis	pycom04g17800 pycom12g20130 pycom12g20140
rosa_chinensis	RchiOBHm_Chr3g0455491
rosa_laevigata	RLG00000025354
rosa_multiflora	Rmu_sc0010428.1_g000004 Rmu_sc0016199.1_g000003
rosa_roxburghii	Rroxscaffold_6G00424210
rosa_rugosa	Rorug03G0008000 Rorug03G0008100 Rorug03G0008200
rosa_samantha	Rh3CG068400 Rh3DG070000
rosa_wichuraiana	Rw3G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	189, 210, 413
AfaI	GTAC	2 cut(s)	149, 219
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	2 cut(s)	104, 136
AluBI	AGCT	5 cut(s)	95, 226, 230, 398, 422
AluI	AGCT	5 cut(s)	95, 226, 230, 398, 422
Alw21I	GWGCWC	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	239
AseI	ATTAAT	1 cut(s)	366
AspA2I	CCTAGG	1 cut(s)	272
AsuNHI	GCTAGC	1 cut(s)	226
AvrII	CCTAGG	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	251
BceAI	ACGGC	1 cut(s)	176
BfaI	CTAG	4 cut(s)	206, 227, 273, 342
BisI	GCNGC	3 cut(s)	189, 210, 240
BlnI	CCTAGG	1 cut(s)	272
BlsI	GCNGC	3 cut(s)	190, 211, 241
BmiI	GGNNCC	1 cut(s)	166
BmsI	GCATC	1 cut(s)	286
BmtI	GCTAGC	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	92
BpuEI	CTTGAG	2 cut(s)	242, 393
BsaJI	CCNNGG	2 cut(s)	213, 272
BsaWI	WCCGGW	2 cut(s)	167, 175
BsaXI	ACNNNNNCTCC	2 cut(s)	421, 451
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	371
BseDI	CCNNGG	2 cut(s)	213, 272
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseNI	ACTGG	1 cut(s)	371
BseRI	GAGGAG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	251
BseYI	CCCAGC	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	175
BsiSI	CCGG	2 cut(s)	168, 176
BslI	CCNNNNNNNGG	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	175
BspACI	CCGC	3 cut(s)	189, 210, 413
BspLI	GGNNCC	1 cut(s)	166
BspOI	GCTAGC	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	371
BssECI	CCNNGG	2 cut(s)	213, 272
BssT1I	CCWWGG	1 cut(s)	272
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	2 cut(s)	384, 441
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 419
BstV1I	GCAGC	1 cut(s)	251
BstV2I	GAAGAC	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	228
Csp6I	GTAC	2 cut(s)	148, 218
CviAII	CATG	1 cut(s)	326
CviJI	RGCY	8 cut(s)	28, 95, 209, 226, 230, 398, 422, 449
CviKI_1	RGCY	8 cut(s)	28, 95, 209, 226, 230, 398, 422, 449
CviQI	GTAC	2 cut(s)	148, 218
DdeI	CTNAG	2 cut(s)	384, 441
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	272
EcoT14I	CCWWGG	1 cut(s)	272
ErhI	CCWWGG	1 cut(s)	272
FaeI	CATG	1 cut(s)	329
FaiI	YATR	2 cut(s)	283, 327
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
FatI	CATG	1 cut(s)	325
Fnu4HI	GCNGC	3 cut(s)	189, 210, 240
Fsp4HI	GCNGC	3 cut(s)	189, 210, 240
FspBI	CTAG	4 cut(s)	206, 227, 273, 342
GluI	GCNGC	3 cut(s)	189, 210, 240
GsaI	CCCAGC	1 cut(s)	234
HapII	CCGG	2 cut(s)	168, 176
Hin1II	CATG	1 cut(s)	329
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	2 cut(s)	168, 176
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	1 cut(s)	158
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	2 cut(s)	42, 439
HpyCH4III	ACNGT	1 cut(s)	164
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 419
HpyF3I	CTNAG	2 cut(s)	384, 441
Hsp92II	CATG	1 cut(s)	329
LmnI	GCTCC	2 cut(s)	38, 178
LpnPI	CCDG	7 cut(s)	27, 81, 181, 189, 216, 247, 384
Lsp1109I	GCAGC	1 cut(s)	251
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	4 cut(s)	206, 227, 273, 342
MaeIII	GTNAC	2 cut(s)	128, 331
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	2 cut(s)	104, 308
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	5 cut(s)	29, 38, 194, 208, 298
MseI	TTAA	2 cut(s)	90, 366
MspI	CCGG	2 cut(s)	168, 176
MwoI	GCNNNNNNNGC	2 cut(s)	236, 419
NheI	GCTAGC	1 cut(s)	226
NlaIII	CATG	1 cut(s)	329
NlaIV	GGNNCC	1 cut(s)	166
NmeAIII	GCCGAG	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	2 cut(s)	29, 124
PkrI	GCNGC	3 cut(s)	190, 211, 241
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PshBI	ATTAAT	1 cut(s)	366
PspFI	CCCAGC	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	166
RsaI	GTAC	2 cut(s)	149, 219
RsaNI	GTAC	2 cut(s)	148, 218
SaqAI	TTAA	2 cut(s)	90, 366
SatI	GCNGC	3 cut(s)	189, 210, 240
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	175
SfaNI	GCATC	1 cut(s)	286
SmlI	CTYRAG	2 cut(s)	221, 408
SmoI	CTYRAG	2 cut(s)	221, 408
Sse9I	AATT	2 cut(s)	104, 308
SsiI	CCGC	3 cut(s)	189, 210, 413
SspMI	CTAG	4 cut(s)	206, 227, 273, 342
StyI	CCWWGG	1 cut(s)	272
TaaI	ACNGT	1 cut(s)	164
TaqI	TCGA	1 cut(s)	198
TasI	AATT	2 cut(s)	104, 308
TauI	GCSGC	2 cut(s)	191, 212
Tru1I	TTAA	2 cut(s)	90, 366
Tru9I	TTAA	2 cut(s)	90, 366
TseI	GCWGC	1 cut(s)	239
TspDTI	ATGAA	1 cut(s)	314
VspI	ATTAAT	1 cut(s)	366
XmaJI	CCTAGG	1 cut(s)	272
XspI	CTAG	4 cut(s)	206, 227, 273, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.