Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011328

Physical Location & Seq

Genomic Coordinates Forward (+)

28438258 .. 28439020

Gene Structure 763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G322000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGAAGCTGCTAAGGTCACCAAGGGCGCCGGAGGAAGAAAAGGCGGAGAGAGAAAGAAGTCCGTGTCGAAGTCGGTCAAAGCGGGGCTCCAATTCCCAGTGGGTCGGATAGCCCGTTTCTTGAAAAAGGGTCGCTACGCCCAGCGAACAGGCACCGGGGCTCCGATTTACCTCGCCGCCGTTCTCGAATATCTCGCCGCTGAGGTGCTGGAGTTGGCGGGGAATGCGGCACGTGACAACAAGAAGACTCGGATAAACCCAAGGCACGTGCTATTGGCAGTGAGAAACGACGAGGAGCTTGGAAAGCTTTTGCAAGGAGTGACCATAGCGAGCGGTGGTGTGCTCCCAAACATAAACCCAGTGCTGCTTCCAAAGAAGACCTCCAATGCGTCTTCTGAAGCTGCTGAGAAGGCGCCCAAGTCTCCCAAGTCTCCCAAGTCTCCCAAGAAGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

152

Amino Acids

15.92

Weight (kDa)

10.52

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27670 AT5G59870
malus_domestica	MD04G1201800.v1.1 MD12G1215400.v1.1 MD12G1215500.v1.1
prunus_persica	Prupe.6G322000_v2.0.a1
pyrus_communis	pycom04g17800 pycom12g20130 pycom12g20140
rosa_chinensis	RchiOBHm_Chr3g0455491
rosa_laevigata	RLG00000025354
rosa_multiflora	Rmu_sc0010428.1_g000004 Rmu_sc0016199.1_g000003
rosa_roxburghii	Rroxscaffold_6G00424210
rosa_rugosa	Rorug03G0008000 Rorug03G0008100 Rorug03G0008200
rosa_samantha	Rh3CG068400 Rh3DG070000
rosa_wichuraiana	Rw3G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	26, 152, 412
AccBSI	CCGCTC	1 cut(s)	333
AciI	CCGC	7 cut(s)	45, 83, 177, 198, 218, 227, 333
AcuI	CTGAAG	1 cut(s)	417
AcvI	CACGTG	2 cut(s)	233, 268
AcyI	GRCGYC	2 cut(s)	27, 413
AgsI	TTSAA	1 cut(s)	124
AluBI	AGCT	4 cut(s)	8, 298, 307, 401
AluI	AGCT	4 cut(s)	8, 298, 307, 401
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	3 cut(s)	426, 435, 444
AoxI	GGCC	1 cut(s)	450
ApeKI	GCWGC	3 cut(s)	8, 364, 401
AspLEI	GCGC	2 cut(s)	29, 415
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	10
BanI	GGYRCC	3 cut(s)	26, 152, 412
BanII	GRGCYC	2 cut(s)	90, 163
BbrPI	CACGTG	2 cut(s)	233, 268
BbsI	GAAGAC	3 cut(s)	251, 383, 384
Bbv12I	GWGCWC	1 cut(s)	345
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	351, 388
BceAI	ACGGC	1 cut(s)	164
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	3 cut(s)	426, 435, 444
BfoI	RGCGCY	2 cut(s)	30, 416
BisI	GCNGC	6 cut(s)	9, 177, 198, 228, 365, 402
BlsI	GCNGC	6 cut(s)	10, 178, 199, 229, 366, 403
Bme1390I	CCNGG	1 cut(s)	157
BmiI	GGNNCC	5 cut(s)	28, 89, 154, 162, 414
BmrFI	CCNGG	1 cut(s)	157
BmrI	ACTGGG	2 cut(s)	92, 353
BmuI	ACTGGG	2 cut(s)	92, 353
BpiI	GAAGAC	3 cut(s)	251, 383, 384
BpmI	CTGGAG	1 cut(s)	230
Bpu10I	CCTNAGC	2 cut(s)	12, 201
BpuMI	CCSGG	1 cut(s)	157
BsaAI	YACGTR	2 cut(s)	233, 268
BsaHI	GRCGYC	2 cut(s)	27, 413
BsaJI	CCNNGG	3 cut(s)	21, 156, 260
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bse1I	ACTGG	2 cut(s)	98, 359
BseDI	CCNNGG	3 cut(s)	21, 156, 260
BseMII	CTCAG	2 cut(s)	192, 396
BseNI	ACTGG	2 cut(s)	98, 359
BseRI	GAGGAG	1 cut(s)	308
BseXI	GCAGC	2 cut(s)	351, 388
BseYI	CCCAGC	1 cut(s)	141
BshFI	GGCC	1 cut(s)	452
BshNI	GGYRCC	3 cut(s)	26, 152, 412
BsiHKAI	GWGCWC	1 cut(s)	345
BsiSI	CCGG	2 cut(s)	30, 156
BsmAI	GTCTC	3 cut(s)	426, 435, 444
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	452
Bsp1286I	GDGCHC	3 cut(s)	90, 163, 345
BspACI	CCGC	7 cut(s)	45, 83, 177, 198, 218, 227, 333
BspANI	GGCC	1 cut(s)	452
BspCNI	CTCAG	2 cut(s)	193, 397
BspLI	GGNNCC	5 cut(s)	28, 89, 154, 162, 414
BspT107I	GGYRCC	3 cut(s)	26, 152, 412
BsrBI	CCGCTC	1 cut(s)	333
BsrI	ACTGG	2 cut(s)	98, 359
BssECI	CCNNGG	3 cut(s)	21, 156, 260
BssNI	GRCGYC	2 cut(s)	27, 413
BssT1I	CCWWGG	2 cut(s)	21, 260
BstACI	GRCGYC	2 cut(s)	27, 413
BstBAI	YACGTR	2 cut(s)	233, 268
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	3 cut(s)	12, 201, 405
BstEII	GGTNACC	1 cut(s)	16
BstH2I	RGCGCY	2 cut(s)	30, 416
BstHHI	GCGC	2 cut(s)	29, 415
BstMAI	GTCTC	3 cut(s)	426, 435, 444
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 304, 410
BstPI	GGTNACC	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	155
BstV1I	GCAGC	2 cut(s)	351, 388
BstV2I	GAAGAC	3 cut(s)	251, 383, 384
BsuRI	GGCC	1 cut(s)	452
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	3 cut(s)	105, 285, 366
Cac8I	GCNNGC	1 cut(s)	331
CfoI	GCGC	2 cut(s)	29, 415
CseI	GACGC	1 cut(s)	378
CviJI	RGCY	8 cut(s)	8, 88, 113, 161, 298, 307, 401, 452
CviKI_1	RGCY	8 cut(s)	8, 88, 113, 161, 298, 307, 401, 452
DdeI	CTNAG	3 cut(s)	12, 201, 405
DinI	GGCGCC	2 cut(s)	28, 414
EciI	GGCGGA	1 cut(s)	60
Eco130I	CCWWGG	2 cut(s)	21, 260
Eco147I	AGGCCT	1 cut(s)	452
Eco24I	GRGCYC	2 cut(s)	90, 163
Eco57I	CTGAAG	1 cut(s)	417
Eco72I	CACGTG	2 cut(s)	233, 268
Eco91I	GGTNACC	1 cut(s)	16
EcoO65I	GGTNACC	1 cut(s)	16
EcoT14I	CCWWGG	2 cut(s)	21, 260
EcoT38I	GRGCYC	2 cut(s)	90, 163
EgeI	GGCGCC	2 cut(s)	28, 414
EheI	GGCGCC	2 cut(s)	28, 414
ErhI	CCWWGG	2 cut(s)	21, 260
FaiI	YATR	2 cut(s)	326, 353
FauI	CCCGC	2 cut(s)	76, 211
Fnu4HI	GCNGC	6 cut(s)	9, 177, 198, 228, 365, 402
FriOI	GRGCYC	2 cut(s)	90, 163
Fsp4HI	GCNGC	6 cut(s)	9, 177, 198, 228, 365, 402
GlaI	GCGC	2 cut(s)	28, 414
GluI	GCNGC	6 cut(s)	9, 177, 198, 228, 365, 402
GsaI	CCCAGC	1 cut(s)	145
GsuI	CTGGAG	1 cut(s)	230
HaeII	RGCGCY	2 cut(s)	30, 416
HaeIII	GGCC	1 cut(s)	452
HapII	CCGG	2 cut(s)	30, 156
HgaI	GACGC	1 cut(s)	378
HhaI	GCGC	2 cut(s)	29, 415
Hin1I	GRCGYC	2 cut(s)	27, 413
Hin6I	GCGC	2 cut(s)	27, 413
HinP1I	GCGC	2 cut(s)	27, 413
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	2 cut(s)	30, 156
HphI	GGTGA	1 cut(s)	10
Hpy188I	TCNGA	4 cut(s)	108, 165, 252, 397
Hpy188III	TCNNGA	2 cut(s)	121, 185
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	2 cut(s)	403, 442
HpyCH4IV	ACGT	2 cut(s)	232, 267
HpyCH4V	TGCA	1 cut(s)	313
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 304, 410
HpyF3I	CTNAG	3 cut(s)	12, 201, 405
HpySE526I	ACGT	2 cut(s)	232, 267
Hsp92I	GRCGYC	2 cut(s)	27, 413
HspAI	GCGC	2 cut(s)	27, 413
KasI	GGCGCC	2 cut(s)	26, 412
LmnI	GCTCC	4 cut(s)	93, 166, 295, 348
LpnPI	CCDG	7 cut(s)	43, 111, 135, 155, 169, 194, 372
Lsp1109I	GCAGC	2 cut(s)	351, 388
MaeII	ACGT	2 cut(s)	232, 267
MaeIII	GTNAC	3 cut(s)	16, 233, 319
MbiI	CCGCTC	1 cut(s)	333
MboII	GAAGA	4 cut(s)	48, 256, 384, 388
MhlI	GDGCHC	3 cut(s)	90, 163, 345
MluCI	AATT	1 cut(s)	92
Mly113I	GGCGCC	2 cut(s)	27, 413
MlyI	GAGTC	1 cut(s)	241
MmeI	TCCRAC	1 cut(s)	86
MnlI	CCTC	5 cut(s)	26, 182, 196, 286, 391
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	2 cut(s)	30, 156
MspR9I	CCNGG	1 cut(s)	157
Mva1269I	GAATGC	1 cut(s)	229
MwoI	GCNNNNNNNGC	3 cut(s)	224, 304, 410
NarI	GGCGCC	2 cut(s)	27, 413
NciI	CCSGG	1 cut(s)	157
NlaIV	GGNNCC	5 cut(s)	28, 89, 154, 162, 414
NmuCI	GTSAC	3 cut(s)	16, 233, 319
PceI	AGGCCT	1 cut(s)	452
PcsI	WCGNNNNNNNCGW	1 cut(s)	112
PctI	GAATGC	1 cut(s)	229
PkrI	GCNGC	6 cut(s)	10, 178, 199, 229, 366, 403
PleI	GAGTC	1 cut(s)	241
PluTI	GGCGCC	2 cut(s)	30, 416
PmaCI	CACGTG	2 cut(s)	233, 268
PmlI	CACGTG	2 cut(s)	233, 268
PpsI	GAGTC	1 cut(s)	241
Ppu21I	YACGTR	2 cut(s)	233, 268
PspCI	CACGTG	2 cut(s)	233, 268
PspEI	GGTNACC	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	141
PspN4I	GGNNCC	5 cut(s)	28, 89, 154, 162, 414
SatI	GCNGC	6 cut(s)	9, 177, 198, 228, 365, 402
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	157
SduI	GDGCHC	3 cut(s)	90, 163, 345
SfoI	GGCGCC	2 cut(s)	28, 414
Sse9I	AATT	1 cut(s)	92
SseBI	AGGCCT	1 cut(s)	452
SsiI	CCGC	7 cut(s)	45, 83, 177, 198, 218, 227, 333
SspDI	GGCGCC	2 cut(s)	26, 412
StuI	AGGCCT	1 cut(s)	452
StyD4I	CCNGG	1 cut(s)	155
StyI	CCWWGG	2 cut(s)	21, 260
TaiI	ACGT	2 cut(s)	235, 270
TaqI	TCGA	2 cut(s)	68, 186
TaqII	GACCGA	1 cut(s)	64
TasI	AATT	1 cut(s)	92
TauI	GCSGC	3 cut(s)	179, 200, 230
TscAI	CASTG	3 cut(s)	105, 285, 366
TseFI	GTSAC	3 cut(s)	16, 233, 319
TseI	GCWGC	3 cut(s)	8, 364, 401
Tsp45I	GTSAC	3 cut(s)	16, 233, 319
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	3 cut(s)	105, 285, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.