Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011328

Physical Location & Seq

Genomic Coordinates Forward (+)

629572 .. 632197

Gene Structure 2626 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0008100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGATATGGCTGTGTTTTTGAGACTACCCGCGATCCCTTTCCCTCTAAGAAACTCGTCACTTCATTCCTCAAGAGGAATTAAAATGGCTCTAAAAACCACCCAGAAGAACACCAACGTCTCTTTCTCTACTGCTACTACTCGAAAGCTGCCCATACTGCTCTTTGACATCATGGACACCATTGTTCGTGACCCTTTTTACCATGACATCCCTGCTTTCTTCAGAATGCCATTCGAAGAACTAATAGAATCGAAGCACCCAACTGCATGGATTGAGTTTGAAAAGGGGTTGATTGATGAGGTGGAACTAGCAAGAAAATTCTTTAAGGATGGAAGGCCTTTTGATTTGGAAGGCCTGAAAAATTGCATGAGAGAAGGATATTCCTATATTGAAGGTGTTGAAGAATTGCTTCATGTATTAAAACATAACAACTATGAGATGCATGCTTTCACAAACTATCCCATCTGGTACGAGATGATTGAGGACAAATTAAACATCTCCAAGTATTTATCTTGGACATTTTGTTCCTGTATAAATGGGAAGAGGAAGCCTGATCCTGAATTCTTTTTGGAAGTTGTGAGACATCTCAAAGTTGATCCAGCAAGCTGTCTATTCGTCGATGATAGGAAGAGGAATGTAGAGGCTGCAAAGGAAGTTGGCATAATTGGTCTACATTTCAAAAACGTAGATGTGCTTCGTCAAGATCTTTCCTTGATGGGGATTGACATTTCAACAGATGAAACCAACCTTGCACAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

253

Amino Acids

29.46

Weight (kDa)

5.8

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_2	PF13419	125 - 221	4.6e-11	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	127 - 220	1e-13	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27670 AT5G59870
malus_domestica	MD04G1201800.v1.1 MD12G1215400.v1.1 MD12G1215500.v1.1
prunus_persica	Prupe.6G322000_v2.0.a1
pyrus_communis	pycom04g17800 pycom12g20130 pycom12g20140
rosa_chinensis	RchiOBHm_Chr3g0455491
rosa_laevigata	RLG00000025354
rosa_multiflora	Rmu_sc0010428.1_g000004 Rmu_sc0016199.1_g000003
rosa_roxburghii	Rroxscaffold_6G00424210
rosa_rugosa	Rorug03G0008000 Rorug03G0008100 Rorug03G0008200
rosa_samantha	Rh3CG068400 Rh3DG070000
rosa_wichuraiana	Rw3G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	670
AccII	CGCG	1 cut(s)	32
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	3 cut(s)	28, 548, 590
AcsI	RAATTY	2 cut(s)	317, 560
AcuI	CTGAAG	1 cut(s)	205
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	1 cut(s)	717
AgsI	TTSAA	5 cut(s)	281, 392, 401, 679, 732
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AloI	GAACNNNNNNTCC	2 cut(s)	508, 540
AluBI	AGCT	2 cut(s)	148, 606
AluI	AGCT	2 cut(s)	148, 606
Alw26I	GTCTC	3 cut(s)	16, 124, 574
AlwI	GGATC	3 cut(s)	28, 548, 590
AoxI	GGCC	2 cut(s)	335, 352
ApeKI	GCWGC	2 cut(s)	148, 644
ApoI	RAATTY	2 cut(s)	317, 560
Asp700I	GAANNNNTTC	1 cut(s)	408
AsuII	TTCGAA	1 cut(s)	234
BarI	GAAGNNNNNNTAC	2 cut(s)	678, 710
BbvI	GCAGC	2 cut(s)	135, 631
BccI	CCATC	3 cut(s)	323, 470, 709
BcoDI	GTCTC	3 cut(s)	16, 124, 574
BfaI	CTAG	1 cut(s)	308
BglII	AGATCT	1 cut(s)	703
BisI	GCNGC	2 cut(s)	149, 645
BlsI	GCNGC	2 cut(s)	150, 646
BmsI	GCATC	1 cut(s)	429
Bpu14I	TTCGAA	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	717
BseGI	GGATG	2 cut(s)	207, 334
BseLI	CCNNNNNNNGG	1 cut(s)	717
BseXI	GCAGC	2 cut(s)	135, 631
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	2 cut(s)	337, 354
BslI	CCNNNNNNNGG	1 cut(s)	717
BsmAI	GTCTC	3 cut(s)	16, 124, 574
BsmBI	CGTCTC	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	2 cut(s)	337, 354
Bsp119I	TTCGAA	1 cut(s)	234
Bsp143I	GATC	4 cut(s)	33, 553, 595, 703
BspACI	CCGC	1 cut(s)	30
BspANI	GGCC	2 cut(s)	337, 354
BspFNI	CGCG	1 cut(s)	32
BspPI	GGATC	3 cut(s)	28, 548, 590
BspT104I	TTCGAA	1 cut(s)	234
BssMI	GATC	4 cut(s)	33, 553, 595, 703
Bst6I	CTCTTC	2 cut(s)	536, 623
BstBI	TTCGAA	1 cut(s)	234
BstC8I	GCNNGC	2 cut(s)	444, 604
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	207, 334
BstFNI	CGCG	1 cut(s)	32
BstKTI	GATC	4 cut(s)	36, 556, 598, 706
BstMAI	GTCTC	3 cut(s)	16, 124, 574
BstMBI	GATC	4 cut(s)	33, 553, 595, 703
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstNSI	RCATGY	1 cut(s)	446
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	2 cut(s)	135, 631
BstX2I	RGATCY	1 cut(s)	703
BstXI	CCANNNNNNTGG	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	703
BsuRI	GGCC	2 cut(s)	337, 354
BtsCI	GGATG	2 cut(s)	207, 334
Cac8I	GCNNGC	2 cut(s)	444, 604
Csp6I	GTAC	1 cut(s)	469
CviAII	CATG	6 cut(s)	172, 203, 267, 367, 413, 443
CviJI	RGCY	8 cut(s)	11, 89, 148, 337, 354, 550, 606, 644
CviKI_1	RGCY	8 cut(s)	11, 89, 148, 337, 354, 550, 606, 644
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	4 cut(s)	35, 555, 597, 705
DpnII	GATC	4 cut(s)	33, 553, 595, 703
Eam1104I	CTCTTC	2 cut(s)	536, 623
EarI	CTCTTC	2 cut(s)	536, 623
Eco147I	AGGCCT	2 cut(s)	337, 354
Eco57I	CTGAAG	1 cut(s)	205
EcoRI	GAATTC	1 cut(s)	560
EcoT22I	ATGCAT	1 cut(s)	444
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	6 cut(s)	175, 206, 270, 370, 416, 446
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FatI	CATG	6 cut(s)	171, 202, 266, 366, 412, 442
FauI	CCCGC	1 cut(s)	37
FblI	GTMKAC	1 cut(s)	670
Fnu4HI	GCNGC	2 cut(s)	149, 645
FokI	GGATG	2 cut(s)	194, 341
Fsp4HI	GCNGC	2 cut(s)	149, 645
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	2 cut(s)	149, 645
HaeIII	GGCC	2 cut(s)	337, 354
Hin1II	CATG	6 cut(s)	175, 206, 270, 370, 416, 446
HinfI	GANTC	1 cut(s)	248
Hpy166II	GTNNAC	1 cut(s)	671
Hpy188I	TCNGA	1 cut(s)	224
Hpy188III	TCNNGA	4 cut(s)	72, 188, 557, 701
Hpy8I	GTNNAC	1 cut(s)	671
Hpy99I	CGWCG	1 cut(s)	620
HpyAV	CCTTC	4 cut(s)	327, 344, 368, 386
HpyCH4IV	ACGT	2 cut(s)	117, 684
HpyCH4V	TGCA	5 cut(s)	266, 366, 442, 647, 752
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	2 cut(s)	117, 684
Hsp92II	CATG	6 cut(s)	175, 206, 270, 370, 416, 446
Kzo9I	GATC	4 cut(s)	33, 553, 595, 703
LpnPI	CCDG	8 cut(s)	116, 225, 368, 451, 541, 564, 570, 612
Lsp1109I	GCAGC	2 cut(s)	135, 631
LweI	GCATC	1 cut(s)	429
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	2 cut(s)	117, 684
MaeIII	GTNAC	2 cut(s)	57, 188
MalI	GATC	4 cut(s)	35, 555, 597, 705
MboI	GATC	4 cut(s)	33, 553, 595, 703
MboII	GAAGA	6 cut(s)	118, 211, 248, 413, 553, 640
MflI	RGATCY	1 cut(s)	703
MluCI	AATT	7 cut(s)	78, 317, 361, 404, 488, 560, 663
MnlI	CCTC	8 cut(s)	54, 68, 79, 292, 475, 537, 624, 634
Mph1103I	ATGCAT	1 cut(s)	444
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	4 cut(s)	81, 324, 419, 491
Mva1269I	GAATGC	1 cut(s)	231
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	157
NdeII	GATC	4 cut(s)	33, 553, 595, 703
NlaIII	CATG	6 cut(s)	175, 206, 270, 370, 416, 446
NmuCI	GTSAC	2 cut(s)	57, 188
NsiI	ATGCAT	1 cut(s)	444
NspI	RCATGY	1 cut(s)	446
NspV	TTCGAA	1 cut(s)	234
PaeI	GCATGC	1 cut(s)	446
PceI	AGGCCT	2 cut(s)	337, 354
PctI	GAATGC	1 cut(s)	231
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	150, 646
PsuI	RGATCY	1 cut(s)	703
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
SaqAI	TTAA	4 cut(s)	81, 324, 419, 491
SatI	GCNGC	2 cut(s)	149, 645
Sau3AI	GATC	4 cut(s)	33, 553, 595, 703
SetI	ASST	7 cut(s)	120, 150, 303, 397, 608, 687, 750
SfaNI	GCATC	1 cut(s)	429
SfuI	TTCGAA	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
SphI	GCATGC	1 cut(s)	446
Sse9I	AATT	7 cut(s)	78, 317, 361, 404, 488, 560, 663
SseBI	AGGCCT	2 cut(s)	337, 354
SsiI	CCGC	1 cut(s)	30
SspMI	CTAG	1 cut(s)	308
StuI	AGGCCT	2 cut(s)	337, 354
TaiI	ACGT	2 cut(s)	120, 687
TaqI	TCGA	4 cut(s)	142, 234, 251, 618
TasI	AATT	7 cut(s)	78, 317, 361, 404, 488, 560, 663
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	4 cut(s)	81, 324, 419, 491
Tru9I	TTAA	4 cut(s)	81, 324, 419, 491
TseFI	GTSAC	2 cut(s)	57, 188
TseI	GCWGC	2 cut(s)	148, 644
Tsp45I	GTSAC	2 cut(s)	57, 188
TspDTI	ATGAA	3 cut(s)	53, 401, 753
XapI	RAATTY	2 cut(s)	317, 560
XceI	RCATGY	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	670
XmnI	GAANNNNTTC	1 cut(s)	408
XspI	CTAG	1 cut(s)	308
Zsp2I	ATGCAT	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.